Wall clock time and date at job start Wed Apr 1 2020 05:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08996 * 109.47398 * 2 1 4 4 C 1.53006 * 109.47301 * 119.99862 * 2 1 3 5 5 N 1.46899 * 109.47047 * 296.88648 * 4 2 1 6 6 C 1.46953 * 111.00172 * 183.96541 * 5 4 2 7 7 C 1.53054 * 109.36267 * 183.18476 * 6 5 4 8 8 N 1.46953 * 109.36885 * 301.60110 * 7 6 5 9 9 C 1.39675 * 110.99952 * 183.18939 * 8 7 6 10 10 C 1.38912 * 120.07077 * 179.97438 * 9 8 7 11 11 C 1.38108 * 119.92289 * 180.02562 * 10 9 8 12 12 C 1.38291 * 120.07413 * 0.02562 * 11 10 9 13 13 C 1.38281 * 120.14824 * 359.97438 * 12 11 10 14 14 C 1.38109 * 120.08050 * 0.02562 * 13 12 11 15 15 C 1.46953 * 110.88097 * 59.31960 * 8 7 6 16 16 C 1.46967 * 110.99923 * 307.76693 * 5 4 2 17 17 N 1.46500 * 109.47232 * 239.99854 * 2 1 3 18 18 C 1.34776 * 120.00347 * 88.69658 * 17 2 1 19 19 O 1.21591 * 119.99550 * 0.02562 * 18 17 2 20 20 N 1.34770 * 119.99979 * 180.02562 * 18 17 2 21 21 C 1.46508 * 119.99723 * 179.97438 * 20 18 17 22 22 C 1.50700 * 109.47201 * 180.02562 * 21 20 18 23 23 H 1.08005 * 120.00018 * 0.02562 * 22 21 20 24 24 C 1.37873 * 120.00086 * 180.02562 * 22 21 20 25 25 N 1.31516 * 120.00002 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 120.00004 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.47022 * 60.00149 * 26 24 22 28 28 H 1.48496 * 109.47036 * 179.97438 * 26 24 22 29 29 H 1.48495 * 109.47137 * 300.00333 * 26 24 22 30 30 H 1.09005 * 109.47174 * 60.00318 * 1 2 3 31 31 H 1.09002 * 109.47521 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47539 * 300.00050 * 1 2 3 33 33 H 1.08994 * 109.47477 * 176.88612 * 4 2 1 34 34 H 1.08998 * 109.46877 * 56.87988 * 4 2 1 35 35 H 1.09001 * 109.48602 * 63.22449 * 6 5 4 36 36 H 1.08994 * 109.49260 * 303.15619 * 6 5 4 37 37 H 1.09005 * 109.48493 * 181.63509 * 7 6 5 38 38 H 1.09003 * 109.48785 * 61.57397 * 7 6 5 39 39 H 1.08001 * 120.03785 * 0.02562 * 10 9 8 40 40 H 1.07999 * 119.96157 * 179.97438 * 11 10 9 41 41 H 1.07998 * 119.92447 * 179.72226 * 12 11 10 42 42 H 1.08000 * 119.96328 * 179.97438 * 13 12 11 43 43 H 1.07997 * 120.04226 * 180.02562 * 14 13 12 44 44 H 1.09001 * 109.48602 * 60.64433 * 15 8 7 45 45 H 1.08994 * 109.49260 * 180.71263 * 15 8 7 46 46 H 1.08999 * 109.48466 * 296.77984 * 16 5 4 47 47 H 1.09005 * 109.48396 * 56.84265 * 16 5 4 48 48 H 0.97008 * 119.99851 * 268.69922 * 17 2 1 49 49 H 0.96995 * 120.00395 * 359.97438 * 20 18 17 50 50 H 1.08998 * 109.47346 * 300.00186 * 21 20 18 51 51 H 1.09001 * 109.46915 * 59.99987 * 21 20 18 52 52 H 0.96995 * 119.99983 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6127 0.0134 2.4475 6 6 2.1640 -0.5983 3.6647 7 6 1.6328 0.1462 4.8920 8 7 2.0081 1.5641 4.8021 9 6 1.6018 2.2626 5.9414 10 6 1.8629 3.6223 6.0543 11 6 1.4603 4.3098 7.1824 12 6 0.7984 3.6460 8.1991 13 6 0.5369 2.2926 8.0899 14 6 0.9367 1.5989 6.9646 15 6 1.4568 2.1757 3.5849 16 6 1.9881 1.4314 2.3576 17 7 2.0183 -0.6906 -1.1961 18 6 2.2179 -0.0023 -2.3375 19 8 1.9931 1.1921 -2.3743 20 7 2.6667 -0.6378 -3.4380 21 6 2.8831 0.1105 -4.6789 22 6 3.3819 -0.8256 -5.7494 23 1 3.5231 -1.8732 -5.5279 24 6 3.6579 -0.3447 -7.0117 25 7 3.4865 0.9311 -7.2814 26 14 4.2768 -1.5049 -8.3386 27 1 3.2698 -2.5709 -8.5731 28 1 4.4961 -0.7465 -9.5963 29 1 5.5558 -2.1197 -7.9012 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 3.1285 -0.7698 1.2219 34 1 1.6317 -1.7315 1.2777 35 1 3.2519 -0.5341 3.6433 36 1 1.8620 -1.6443 3.7150 37 1 2.0632 -0.2874 5.7947 38 1 0.5468 0.0590 4.9284 39 1 2.3801 4.1412 5.2608 40 1 1.6633 5.3668 7.2710 41 1 0.4886 4.1851 9.0822 42 1 0.0202 1.7771 8.8859 43 1 0.7318 0.5419 6.8798 44 1 0.3689 2.1116 3.6064 45 1 1.7588 3.2218 3.5347 46 1 3.0739 1.5185 2.3213 47 1 1.5577 1.8649 1.4548 48 1 2.1979 -1.6435 -1.1667 49 1 2.8464 -1.5905 -3.4085 50 1 1.9441 0.5615 -4.9997 51 1 3.6221 0.8931 -4.5070 52 1 3.6810 1.2694 -8.1694 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426419859.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:45 Heat of formation + Delta-G solvation = -8.034575 kcal Electronic energy + Delta-G solvation = -29733.453288 eV Core-core repulsion = 25731.976765 eV Total energy + Delta-G solvation = -4001.476523 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.46614 -40.93834 -39.44777 -37.48829 -36.12351 -35.46632 -34.35594 -32.66200 -31.98814 -31.41924 -30.45587 -28.91439 -28.06446 -25.77562 -25.25438 -24.62170 -23.05436 -22.56754 -21.99917 -21.52046 -20.68531 -19.86395 -18.67048 -18.02741 -17.60706 -16.87202 -16.67227 -16.47756 -16.35256 -16.12396 -15.97795 -15.94892 -15.61184 -15.10675 -14.98178 -14.91496 -14.64898 -14.40138 -14.32539 -14.08735 -14.00266 -13.55756 -13.47490 -13.06149 -12.94263 -12.83103 -12.67569 -12.55293 -12.44697 -12.41886 -12.22361 -12.17894 -12.00676 -11.76834 -11.50009 -11.44326 -11.21604 -10.78249 -10.66548 -10.26518 -9.84084 -9.59518 -9.40527 -8.78874 -8.27230 -6.43878 0.46828 0.50308 1.43953 1.48531 1.56483 1.82548 2.26658 2.39909 2.62973 2.87259 2.98690 3.07617 3.59399 3.64821 3.75157 3.92485 4.01678 4.08022 4.09922 4.22129 4.26320 4.31604 4.32348 4.37194 4.47480 4.58670 4.61783 4.68004 4.73235 4.76447 4.78130 4.83806 4.90505 4.92737 5.00921 5.01871 5.13994 5.15513 5.28051 5.31937 5.34662 5.50093 5.52704 5.59816 5.67846 5.69663 5.82304 5.86309 5.90051 5.98676 6.05948 6.29246 6.36399 6.67809 7.25602 7.34449 7.75205 8.84854 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.030105 B = 0.001578 C = 0.001538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.858738 B =17742.363655 C =18205.689827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.157 3.843 3 H 0.063 0.937 4 C 0.062 3.938 5 N -0.530 5.530 6 C 0.058 3.942 7 C 0.057 3.943 8 N -0.501 5.501 9 C 0.098 3.902 10 C -0.158 4.158 11 C -0.103 4.103 12 C -0.156 4.156 13 C -0.101 4.101 14 C -0.180 4.180 15 C 0.070 3.930 16 C 0.049 3.951 17 N -0.728 5.728 18 C 0.693 3.307 19 O -0.649 6.649 20 N -0.723 5.723 21 C 0.286 3.714 22 C -0.556 4.556 23 H 0.084 0.916 24 C 0.004 3.996 25 N -0.931 5.931 26 Si 0.987 3.013 27 H -0.262 1.262 28 H -0.286 1.286 29 H -0.262 1.262 30 H 0.023 0.977 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.040 0.960 34 H 0.107 0.893 35 H 0.037 0.963 36 H 0.107 0.893 37 H 0.098 0.902 38 H 0.057 0.943 39 H 0.122 0.878 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.138 0.862 44 H 0.050 0.950 45 H 0.086 0.914 46 H 0.034 0.966 47 H 0.082 0.918 48 H 0.410 0.590 49 H 0.405 0.595 50 H -0.016 1.016 51 H -0.016 1.016 52 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.551 -4.212 33.327 34.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.051 3.949 3 H 0.081 0.919 4 C -0.066 4.066 5 N -0.256 5.256 6 C -0.070 4.070 7 C -0.070 4.070 8 N -0.216 5.216 9 C 0.001 3.999 10 C -0.178 4.178 11 C -0.122 4.122 12 C -0.175 4.175 13 C -0.119 4.119 14 C -0.201 4.201 15 C -0.056 4.056 16 C -0.080 4.080 17 N -0.385 5.385 18 C 0.393 3.607 19 O -0.532 6.532 20 N -0.377 5.377 21 C 0.162 3.838 22 C -0.594 4.594 23 H 0.102 0.898 24 C -0.196 4.196 25 N -0.569 5.569 26 Si 0.809 3.191 27 H -0.187 1.187 28 H -0.211 1.211 29 H -0.187 1.187 30 H 0.043 0.957 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.058 0.942 34 H 0.125 0.875 35 H 0.056 0.944 36 H 0.125 0.875 37 H 0.116 0.884 38 H 0.075 0.925 39 H 0.140 0.860 40 H 0.156 0.844 41 H 0.157 0.843 42 H 0.159 0.841 43 H 0.156 0.844 44 H 0.068 0.932 45 H 0.105 0.895 46 H 0.052 0.948 47 H 0.100 0.900 48 H 0.247 0.753 49 H 0.240 0.760 50 H 0.002 0.998 51 H 0.002 0.998 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.712 -3.045 33.055 33.682 hybrid contribution 0.693 -0.546 -1.106 1.415 sum -5.019 -3.591 31.948 32.539 Atomic orbital electron populations 1.21994 0.94365 1.02634 1.01184 1.20845 0.94893 0.96358 0.82785 0.91857 1.22224 0.98239 0.98627 0.87548 1.62197 1.59330 1.01851 1.02181 1.22261 0.97434 0.99388 0.87946 1.22384 0.99829 0.85994 0.98820 1.59270 1.56880 1.03924 1.01572 1.19136 0.95157 0.93265 0.92356 1.20984 1.03610 0.93257 0.99995 1.21297 0.97119 1.00666 0.93098 1.21394 1.01075 0.95072 0.99911 1.21330 0.98399 0.94670 0.97499 1.21528 1.01250 1.01435 0.95860 1.22206 0.97781 0.98465 0.87161 1.22280 0.98549 0.89159 0.97988 1.44907 1.72102 1.12373 1.09152 1.16285 0.78217 0.84929 0.81312 1.90835 1.61178 1.15974 1.85175 1.45289 1.69516 1.12621 1.10272 1.18391 0.93646 0.91465 0.80255 1.21579 1.46049 0.95988 0.95763 0.89787 1.26070 0.95135 0.97048 1.01332 1.70141 1.48570 1.15480 1.22733 0.85185 0.79184 0.77989 0.76697 1.18654 1.21123 1.18676 0.95746 0.91098 0.90025 0.94198 0.87485 0.94424 0.87496 0.88404 0.92467 0.85986 0.84416 0.84324 0.84073 0.84398 0.93207 0.89533 0.94751 0.89994 0.75326 0.76002 0.99762 0.99767 0.92273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 9.35 71.98 0.67 -2.78 16 2 C 0.16 3.93 2.24 44.99 0.10 4.03 16 3 H 0.06 1.99 5.38 -2.39 -0.01 1.98 16 4 C 0.06 1.07 4.75 86.31 0.41 1.48 16 5 N -0.53 -8.87 4.19 -895.69 -3.75 -12.62 16 6 C 0.06 0.76 5.62 86.31 0.48 1.25 16 7 C 0.06 0.75 4.29 86.31 0.37 1.12 16 8 N -0.50 -8.63 4.75 -694.79 -3.30 -11.93 16 9 C 0.10 1.71 5.64 38.21 0.22 1.92 16 10 C -0.16 -2.70 9.19 22.40 0.21 -2.49 16 11 C -0.10 -1.47 10.04 22.25 0.22 -1.25 16 12 C -0.16 -1.98 10.04 22.29 0.22 -1.75 16 13 C -0.10 -1.27 10.04 22.25 0.22 -1.05 16 14 C -0.18 -2.63 8.82 22.40 0.20 -2.43 16 15 C 0.07 1.24 5.38 86.31 0.46 1.71 16 16 C 0.05 0.96 5.13 86.31 0.44 1.40 16 17 N -0.73 -20.77 5.05 -457.82 -2.31 -23.09 16 18 C 0.69 29.11 8.56 179.06 1.53 30.64 16 19 O -0.65 -33.97 15.94 -4.00 -0.06 -34.04 16 20 N -0.72 -31.44 5.55 -482.28 -2.68 -34.12 16 21 C 0.29 16.06 5.43 85.63 0.46 16.52 16 22 C -0.56 -30.52 9.28 25.60 0.24 -30.28 16 23 H 0.08 4.13 7.60 -2.91 -0.02 4.11 16 24 C 0.00 0.21 5.46 84.65 0.46 0.67 16 25 N -0.93 -56.65 13.29 21.45 0.28 -56.36 16 26 Si 0.99 42.42 29.54 68.60 2.03 44.45 16 27 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 28 H -0.29 -12.21 7.11 99.48 0.71 -11.50 16 29 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 30 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.08 1.77 7.69 -2.39 -0.02 1.75 16 33 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.10 1.06 7.17 -2.38 -0.02 1.05 16 38 H 0.06 0.76 7.58 -2.39 -0.02 0.74 16 39 H 0.12 2.01 7.19 -2.91 -0.02 1.99 16 40 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 41 H 0.14 1.14 8.06 -2.91 -0.02 1.11 16 42 H 0.14 1.11 8.06 -2.91 -0.02 1.09 16 43 H 0.14 1.56 5.81 -2.91 -0.02 1.55 16 44 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.09 1.51 6.82 -2.39 -0.02 1.49 16 46 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.08 1.84 5.91 -2.38 -0.01 1.83 16 48 H 0.41 8.54 8.65 -92.70 -0.80 7.74 16 49 H 0.40 14.34 8.34 -92.71 -0.77 13.57 16 50 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 51 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 52 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -75.64 410.91 -3.51 -79.15 By element: Atomic # 1 Polarization: 30.49 SS G_CDS: -0.65 Total: 29.84 kcal Atomic # 6 Polarization: 11.78 SS G_CDS: 6.93 Total: 18.72 kcal Atomic # 7 Polarization: -126.36 SS G_CDS: -11.76 Total: -138.12 kcal Atomic # 8 Polarization: -33.97 SS G_CDS: -0.06 Total: -34.04 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -75.64 -3.51 -79.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426419859.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.112 kcal (2) G-P(sol) polarization free energy of solvation -75.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds