Wall clock time and date at job start Wed Apr 1 2020 06:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46835 * 2 1 4 4 C 1.50698 * 109.47096 * 119.99258 * 2 1 3 5 5 O 1.21287 * 119.99875 * 93.92266 * 4 2 1 6 6 N 1.34775 * 120.00605 * 273.92397 * 4 2 1 7 7 C 1.46498 * 119.99625 * 0.02562 * 6 4 2 8 8 C 1.46499 * 120.00565 * 180.02562 * 6 4 2 9 9 C 1.50691 * 109.46987 * 89.99790 * 8 6 4 10 10 H 1.07996 * 120.00351 * 0.02562 * 9 8 6 11 11 C 1.37880 * 119.99752 * 180.02562 * 9 8 6 12 12 N 1.31519 * 120.00165 * 180.02562 * 11 9 8 13 13 Si 1.86796 * 120.00303 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.46982 * 89.99945 * 13 11 9 15 15 H 1.48493 * 109.47567 * 210.00017 * 13 11 9 16 16 H 1.48507 * 109.47151 * 330.00377 * 13 11 9 17 17 N 1.46893 * 109.47384 * 239.99555 * 2 1 3 18 18 C 1.46848 * 111.00068 * 186.01055 * 17 2 1 19 19 C 1.53037 * 109.52612 * 185.84265 * 18 17 2 20 20 C 1.53119 * 109.27578 * 300.82117 * 19 18 17 21 21 N 1.46505 * 109.52271 * 177.56109 * 20 19 18 22 22 C 1.38998 * 119.99965 * 155.12587 * 21 20 19 23 23 C 1.39145 * 119.70910 * 0.02562 * 22 21 20 24 24 C 1.38292 * 119.09529 * 179.97438 * 23 22 21 25 25 C 1.38877 * 118.51123 * 359.97438 * 24 23 22 26 26 C 1.38024 * 119.33058 * 0.27238 * 25 24 23 27 27 N 1.31978 * 120.85348 * 359.45491 * 26 25 24 28 28 C 1.53114 * 109.21355 * 57.62421 * 20 19 18 29 29 C 1.46843 * 111.00414 * 310.22290 * 17 2 1 30 30 H 1.09001 * 109.46835 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47358 * 300.00180 * 1 2 3 32 32 H 1.08994 * 109.47083 * 60.00863 * 1 2 3 33 33 H 1.08998 * 109.47714 * 89.99612 * 7 6 4 34 34 H 1.09002 * 109.47616 * 209.99910 * 7 6 4 35 35 H 1.09005 * 109.47257 * 330.00106 * 7 6 4 36 36 H 1.09002 * 109.47270 * 210.00107 * 8 6 4 37 37 H 1.09002 * 109.46796 * 329.99953 * 8 6 4 38 38 H 0.96994 * 120.00276 * 180.02562 * 12 11 9 39 39 H 1.09003 * 109.46327 * 65.82871 * 18 17 2 40 40 H 1.09002 * 109.45737 * 305.85295 * 18 17 2 41 41 H 1.09003 * 109.50739 * 180.88354 * 19 18 17 42 42 H 1.08997 * 109.53911 * 60.78149 * 19 18 17 43 43 H 1.09008 * 109.52355 * 297.68385 * 20 19 18 44 44 H 0.96994 * 119.99496 * 335.12153 * 21 20 19 45 45 H 1.08002 * 120.44717 * 0.02562 * 23 22 21 46 46 H 1.08005 * 120.74518 * 180.02562 * 24 23 22 47 47 H 1.07999 * 120.33581 * 180.02562 * 25 24 23 48 48 H 1.08001 * 119.57685 * 179.70041 * 26 25 24 49 49 H 1.08995 * 109.50882 * 62.31512 * 28 20 19 50 50 H 1.09008 * 109.50642 * 182.43612 * 28 20 19 51 51 H 1.09002 * 109.46319 * 294.17640 * 29 17 2 52 52 H 1.08997 * 109.46055 * 54.14049 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 1.2305 5 8 2.3022 -1.8917 1.1811 6 7 2.1817 -0.0327 2.3860 7 6 1.8552 1.3941 2.4459 8 6 2.6706 -0.7231 3.5821 9 6 4.1743 -0.6389 3.6313 10 1 4.7121 -0.1224 2.8500 11 6 4.8636 -1.2212 4.6738 12 7 6.1760 -1.1474 4.7171 13 14 3.9336 -2.1151 6.0248 14 1 3.7782 -3.5452 5.6560 15 1 4.6900 -2.0118 7.2985 16 1 2.5929 -1.4991 6.1939 17 7 2.0197 -0.6925 -1.1993 18 6 3.4806 -0.8377 -1.1636 19 6 3.9684 -1.4294 -2.4880 20 6 3.3065 -2.7927 -2.7067 21 7 3.7247 -3.3380 -4.0006 22 6 3.7056 -4.7112 -4.2149 23 6 3.2876 -5.5624 -3.1966 24 6 3.2731 -6.9264 -3.4238 25 6 3.6780 -7.3958 -4.6666 26 6 4.0854 -6.4949 -5.6296 27 7 4.0841 -5.1977 -5.3867 28 6 1.7849 -2.6225 -2.6909 29 6 1.3606 -1.9947 -1.3612 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 0.8077 1.5160 2.7217 34 1 2.4858 1.8803 3.1902 35 1 2.0290 1.8479 1.4702 36 1 2.2510 -0.2516 4.4708 37 1 2.3661 -1.7692 3.5477 38 1 6.6610 -1.5573 5.4502 39 1 3.7598 -1.5009 -0.3448 40 1 3.9390 0.1396 -1.0118 41 1 5.0510 -1.5516 -2.4552 42 1 3.7023 -0.7602 -3.3062 43 1 3.6051 -3.4746 -1.9104 44 1 4.0149 -2.7407 -4.7076 45 1 2.9780 -5.1631 -2.2421 46 1 2.9532 -7.6113 -2.6524 47 1 3.6778 -8.4553 -4.8761 48 1 4.4057 -6.8559 -6.5958 49 1 1.4828 -1.9724 -3.5119 50 1 1.3085 -3.5965 -2.8030 51 1 1.6496 -2.6525 -0.5415 52 1 0.2793 -1.8579 -1.3527 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000534861955.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:04:37 Heat of formation + Delta-G solvation = 25.617025 kcal Electronic energy + Delta-G solvation = -31456.849184 eV Core-core repulsion = 27456.831904 eV Total energy + Delta-G solvation = -4000.017280 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.54515 -40.04415 -38.19157 -35.96653 -34.92087 -33.27472 -32.54919 -32.27046 -30.87222 -30.17202 -28.68782 -28.19918 -26.10314 -24.86358 -23.73902 -23.45920 -22.70271 -22.03473 -21.14396 -19.94639 -18.44644 -17.71179 -17.01487 -16.95128 -16.68522 -16.30573 -15.70323 -15.09051 -14.92856 -14.80331 -14.73235 -14.48414 -14.26263 -14.02789 -13.68958 -13.64908 -13.22609 -13.10983 -13.06669 -12.60118 -12.46855 -12.22174 -12.14099 -12.01460 -11.91787 -11.76794 -11.54325 -11.44333 -11.11487 -10.95908 -10.89718 -10.75603 -10.60379 -10.47245 -10.18642 -10.06846 -9.76016 -9.69114 -9.55493 -9.49850 -8.64837 -7.85043 -7.77840 -7.74338 -6.14640 -4.13813 1.24379 1.41530 3.04651 3.19755 3.23986 3.30117 3.31789 3.77873 3.89118 3.95692 4.33896 4.54607 4.71106 4.79480 4.81393 4.92364 5.04438 5.06577 5.11165 5.17404 5.18064 5.19745 5.31733 5.34645 5.45322 5.56910 5.58009 5.64240 5.69370 5.71297 5.77755 5.84159 5.88035 5.96784 5.98624 5.99836 6.04889 6.07750 6.17975 6.26903 6.29012 6.42894 6.54354 6.61614 6.86500 6.98390 7.06608 7.17330 7.25651 7.53892 7.54655 8.13307 8.15725 8.40204 8.83704 8.89734 9.45506 10.98585 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011136 B = 0.002902 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.752622 B = 9645.365890 C =11096.269233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.059 3.941 3 H 0.103 0.897 4 C 0.482 3.518 5 O -0.541 6.541 6 N -0.593 5.593 7 C 0.080 3.920 8 C 0.214 3.786 9 C -0.528 4.528 10 H 0.073 0.927 11 C 0.073 3.927 12 N -0.896 5.896 13 Si 0.876 3.124 14 H -0.274 1.274 15 H -0.284 1.284 16 H -0.266 1.266 17 N -0.510 5.510 18 C 0.043 3.957 19 C -0.115 4.115 20 C 0.153 3.847 21 N -0.718 5.718 22 C 0.407 3.593 23 C -0.239 4.239 24 C -0.034 4.034 25 C -0.242 4.242 26 C 0.145 3.855 27 N -0.551 5.551 28 C -0.124 4.124 29 C 0.033 3.967 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.047 0.953 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.029 0.971 37 H 0.035 0.965 38 H 0.265 0.735 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.402 0.598 45 H 0.134 0.866 46 H 0.130 0.870 47 H 0.127 0.873 48 H 0.151 0.849 49 H 0.069 0.931 50 H 0.065 0.935 51 H 0.076 0.924 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.550 -2.071 -16.576 19.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.053 4.053 3 H 0.120 0.880 4 C 0.268 3.732 5 O -0.419 6.419 6 N -0.325 5.325 7 C -0.064 4.064 8 C 0.093 3.907 9 C -0.567 4.567 10 H 0.091 0.909 11 C -0.130 4.130 12 N -0.535 5.535 13 Si 0.703 3.297 14 H -0.200 1.200 15 H -0.210 1.210 16 H -0.191 1.191 17 N -0.234 5.234 18 C -0.085 4.085 19 C -0.153 4.153 20 C 0.048 3.952 21 N -0.348 5.348 22 C 0.171 3.829 23 C -0.264 4.264 24 C -0.060 4.060 25 C -0.265 4.265 26 C -0.013 4.013 27 N -0.268 5.268 28 C -0.164 4.164 29 C -0.095 4.095 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.065 0.935 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.047 0.953 37 H 0.053 0.947 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.101 0.899 44 H 0.238 0.762 45 H 0.151 0.849 46 H 0.148 0.852 47 H 0.145 0.855 48 H 0.169 0.831 49 H 0.088 0.912 50 H 0.084 0.916 51 H 0.094 0.906 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.150 -1.810 -17.328 20.163 hybrid contribution -0.136 -1.207 1.960 2.306 sum -10.286 -3.016 -15.369 18.737 Atomic orbital electron populations 1.21822 0.92467 1.02946 1.02635 1.21929 0.96989 0.99128 0.87229 0.87951 1.21551 0.78730 0.87892 0.85042 1.90580 1.51560 1.15912 1.83889 1.47999 1.63367 1.09573 1.11532 1.21747 0.99889 0.82266 1.02497 1.19664 0.95702 0.93261 0.82048 1.21283 0.89409 1.36285 1.09713 0.90866 1.24859 0.94750 0.95551 0.97812 1.69892 1.06323 1.44826 1.32422 0.86853 0.80207 0.80966 0.81666 1.19953 1.21029 1.19112 1.62516 1.05681 1.21036 1.34151 1.22195 0.87523 1.01622 0.97160 1.21756 1.00087 0.94930 0.98541 1.21112 0.94278 0.95435 0.84422 1.44660 1.71660 1.02477 1.16019 1.18402 0.89683 0.85668 0.89128 1.21541 1.10117 0.94016 1.00701 1.21337 0.93368 0.94802 0.96479 1.21768 1.08362 1.00910 0.95509 1.22338 0.93060 0.87259 0.98604 1.67167 1.22226 1.16449 1.21008 1.22033 0.95273 1.00660 0.98402 1.22432 0.98953 0.90699 0.97436 0.91750 0.91725 0.90945 0.93477 0.90539 0.91886 0.95348 0.94689 0.92522 0.91483 0.90594 0.90849 0.90843 0.89880 0.76250 0.84869 0.85182 0.85456 0.83131 0.91219 0.91588 0.90582 0.90565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 8.59 37.16 0.32 -1.25 16 2 C 0.06 0.82 2.29 -68.87 -0.16 0.66 16 3 H 0.10 1.29 6.01 -51.93 -0.31 0.98 16 4 C 0.48 9.02 5.93 -10.99 -0.07 8.96 16 5 O -0.54 -12.03 11.91 5.55 0.07 -11.96 16 6 N -0.59 -11.56 2.86 -182.96 -0.52 -12.08 16 7 C 0.08 1.15 10.04 59.85 0.60 1.75 16 8 C 0.21 5.08 4.23 -5.20 -0.02 5.06 16 9 C -0.53 -14.80 9.94 -34.44 -0.34 -15.14 16 10 H 0.07 2.25 8.06 -52.49 -0.42 1.83 16 11 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 12 N -0.90 -27.25 13.96 55.43 0.77 -26.48 16 13 Si 0.88 21.28 27.47 -169.99 -4.67 16.61 16 14 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 15 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.27 -6.09 6.54 56.52 0.37 -5.72 16 17 N -0.51 -6.93 4.73 -228.08 -1.08 -8.01 16 18 C 0.04 0.64 4.90 -3.83 -0.02 0.62 16 19 C -0.11 -1.39 5.57 -26.65 -0.15 -1.54 16 20 C 0.15 1.86 2.20 -67.81 -0.15 1.71 16 21 N -0.72 -8.45 5.25 -53.81 -0.28 -8.73 16 22 C 0.41 5.31 7.63 -155.02 -1.18 4.12 16 23 C -0.24 -2.97 8.87 -39.23 -0.35 -3.32 16 24 C -0.03 -0.37 10.16 -39.33 -0.40 -0.77 16 25 C -0.24 -2.40 10.10 -39.42 -0.40 -2.80 16 26 C 0.14 1.56 11.17 -17.57 -0.20 1.36 16 27 N -0.55 -7.19 10.39 -12.43 -0.13 -7.32 16 28 C -0.12 -1.46 5.61 -26.65 -0.15 -1.61 16 29 C 0.03 0.44 4.63 -3.83 -0.02 0.42 16 30 H 0.06 0.76 6.19 -51.93 -0.32 0.44 16 31 H 0.06 0.67 7.89 -51.93 -0.41 0.26 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.05 0.56 8.12 -51.93 -0.42 0.14 16 34 H 0.08 1.16 8.07 -51.93 -0.42 0.74 16 35 H 0.06 0.75 5.83 -51.93 -0.30 0.45 16 36 H 0.03 0.65 7.13 -51.93 -0.37 0.28 16 37 H 0.04 0.89 6.85 -51.93 -0.36 0.54 16 38 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 39 H 0.07 1.26 6.04 -51.93 -0.31 0.95 16 40 H 0.08 1.10 8.12 -51.93 -0.42 0.68 16 41 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.08 1.16 6.45 -51.92 -0.34 0.83 16 44 H 0.40 4.36 8.73 -40.82 -0.36 4.01 16 45 H 0.13 1.65 6.05 -52.49 -0.32 1.34 16 46 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 47 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 48 H 0.15 1.16 8.06 -52.49 -0.42 0.74 16 49 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 50 H 0.07 0.76 7.66 -51.92 -0.40 0.37 16 51 H 0.08 1.26 5.65 -51.93 -0.29 0.96 16 52 H 0.08 0.93 5.82 -51.93 -0.30 0.62 16 LS Contribution 398.38 15.07 6.00 6.00 Total: -1.00 -33.33 398.38 -10.81 -44.14 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -8.20 Total: 7.61 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: -2.77 Total: 0.22 kcal Atomic # 7 Polarization: -61.38 SS G_CDS: -1.24 Total: -62.62 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.07 Total: -11.96 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.67 Total: 16.61 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.33 -10.81 -44.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000534861955.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.757 kcal (2) G-P(sol) polarization free energy of solvation -33.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds