Wall clock time and date at job start Wed Apr 1 2020 06:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46835 * 2 1 4 4 C 1.50698 * 109.47096 * 119.99258 * 2 1 3 5 5 O 1.21287 * 119.99875 * 93.92266 * 4 2 1 6 6 N 1.34775 * 120.00605 * 273.92397 * 4 2 1 7 7 C 1.46498 * 119.99625 * 0.02562 * 6 4 2 8 8 C 1.46499 * 120.00565 * 180.02562 * 6 4 2 9 9 C 1.50691 * 109.46987 * 89.99790 * 8 6 4 10 10 H 1.07996 * 120.00351 * 0.02562 * 9 8 6 11 11 C 1.37880 * 119.99752 * 180.02562 * 9 8 6 12 12 N 1.31519 * 120.00165 * 180.02562 * 11 9 8 13 13 Si 1.86796 * 120.00303 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.46982 * 89.99945 * 13 11 9 15 15 H 1.48493 * 109.47567 * 210.00017 * 13 11 9 16 16 H 1.48507 * 109.47151 * 330.00377 * 13 11 9 17 17 N 1.46893 * 109.47384 * 239.99555 * 2 1 3 18 18 C 1.46848 * 111.00068 * 186.01055 * 17 2 1 19 19 C 1.53037 * 109.52612 * 185.84265 * 18 17 2 20 20 C 1.53119 * 109.27578 * 300.82117 * 19 18 17 21 21 N 1.46505 * 109.52271 * 177.56109 * 20 19 18 22 22 C 1.38998 * 119.99965 * 155.12587 * 21 20 19 23 23 C 1.39145 * 119.70910 * 0.02562 * 22 21 20 24 24 C 1.38292 * 119.09529 * 179.97438 * 23 22 21 25 25 C 1.38877 * 118.51123 * 359.97438 * 24 23 22 26 26 C 1.38024 * 119.33058 * 0.27238 * 25 24 23 27 27 N 1.31978 * 120.85348 * 359.45491 * 26 25 24 28 28 C 1.53114 * 109.21355 * 57.62421 * 20 19 18 29 29 C 1.46843 * 111.00414 * 310.22290 * 17 2 1 30 30 H 1.09001 * 109.46835 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47358 * 300.00180 * 1 2 3 32 32 H 1.08994 * 109.47083 * 60.00863 * 1 2 3 33 33 H 1.08998 * 109.47714 * 89.99612 * 7 6 4 34 34 H 1.09002 * 109.47616 * 209.99910 * 7 6 4 35 35 H 1.09005 * 109.47257 * 330.00106 * 7 6 4 36 36 H 1.09002 * 109.47270 * 210.00107 * 8 6 4 37 37 H 1.09002 * 109.46796 * 329.99953 * 8 6 4 38 38 H 0.96994 * 120.00276 * 180.02562 * 12 11 9 39 39 H 1.09003 * 109.46327 * 65.82871 * 18 17 2 40 40 H 1.09002 * 109.45737 * 305.85295 * 18 17 2 41 41 H 1.09003 * 109.50739 * 180.88354 * 19 18 17 42 42 H 1.08997 * 109.53911 * 60.78149 * 19 18 17 43 43 H 1.09008 * 109.52355 * 297.68385 * 20 19 18 44 44 H 0.96994 * 119.99496 * 335.12153 * 21 20 19 45 45 H 1.08002 * 120.44717 * 0.02562 * 23 22 21 46 46 H 1.08005 * 120.74518 * 180.02562 * 24 23 22 47 47 H 1.07999 * 120.33581 * 180.02562 * 25 24 23 48 48 H 1.08001 * 119.57685 * 179.70041 * 26 25 24 49 49 H 1.08995 * 109.50882 * 62.31512 * 28 20 19 50 50 H 1.09008 * 109.50642 * 182.43612 * 28 20 19 51 51 H 1.09002 * 109.46319 * 294.17640 * 29 17 2 52 52 H 1.08997 * 109.46055 * 54.14049 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 1.2305 5 8 2.3022 -1.8917 1.1811 6 7 2.1817 -0.0327 2.3860 7 6 1.8552 1.3941 2.4459 8 6 2.6706 -0.7231 3.5821 9 6 4.1743 -0.6389 3.6313 10 1 4.7121 -0.1224 2.8500 11 6 4.8636 -1.2212 4.6738 12 7 6.1760 -1.1474 4.7171 13 14 3.9336 -2.1151 6.0248 14 1 3.7782 -3.5452 5.6560 15 1 4.6900 -2.0118 7.2985 16 1 2.5929 -1.4991 6.1939 17 7 2.0197 -0.6925 -1.1993 18 6 3.4806 -0.8377 -1.1636 19 6 3.9684 -1.4294 -2.4880 20 6 3.3065 -2.7927 -2.7067 21 7 3.7247 -3.3380 -4.0006 22 6 3.7056 -4.7112 -4.2149 23 6 3.2876 -5.5624 -3.1966 24 6 3.2731 -6.9264 -3.4238 25 6 3.6780 -7.3958 -4.6666 26 6 4.0854 -6.4949 -5.6296 27 7 4.0841 -5.1977 -5.3867 28 6 1.7849 -2.6225 -2.6909 29 6 1.3606 -1.9947 -1.3612 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 0.8077 1.5160 2.7217 34 1 2.4858 1.8803 3.1902 35 1 2.0290 1.8479 1.4702 36 1 2.2510 -0.2516 4.4708 37 1 2.3661 -1.7692 3.5477 38 1 6.6610 -1.5573 5.4502 39 1 3.7598 -1.5009 -0.3448 40 1 3.9390 0.1396 -1.0118 41 1 5.0510 -1.5516 -2.4552 42 1 3.7023 -0.7602 -3.3062 43 1 3.6051 -3.4746 -1.9104 44 1 4.0149 -2.7407 -4.7076 45 1 2.9780 -5.1631 -2.2421 46 1 2.9532 -7.6113 -2.6524 47 1 3.6778 -8.4553 -4.8761 48 1 4.4057 -6.8559 -6.5958 49 1 1.4828 -1.9724 -3.5119 50 1 1.3085 -3.5965 -2.8030 51 1 1.6496 -2.6525 -0.5415 52 1 0.2793 -1.8579 -1.3527 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000534861955.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:04:35 Heat of formation + Delta-G solvation = 2.284432 kcal Electronic energy + Delta-G solvation = -31457.860962 eV Core-core repulsion = 27456.831904 eV Total energy + Delta-G solvation = -4001.029058 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 2.60 seconds Orbital eigenvalues (eV) -41.72691 -41.07323 -39.40456 -37.12843 -36.44295 -34.83099 -34.08361 -33.23601 -31.96171 -31.29068 -30.28578 -29.27286 -27.43665 -26.08354 -25.01538 -24.44481 -23.99713 -23.08451 -22.45767 -21.07125 -19.83213 -19.16829 -18.64637 -18.07196 -17.93759 -17.45793 -16.77408 -16.54727 -16.25604 -15.94388 -15.82211 -15.68833 -15.49320 -15.21970 -15.05336 -14.70564 -14.57213 -14.29042 -14.22419 -13.88961 -13.70297 -13.68319 -13.35249 -13.28697 -13.04133 -12.93913 -12.84408 -12.66887 -12.48494 -12.43126 -12.17078 -11.99314 -11.96735 -11.83933 -11.75593 -11.54328 -11.06486 -11.00940 -10.86332 -10.68588 -10.39664 -9.38806 -9.15792 -8.65788 -8.37227 -6.42082 0.36793 0.54359 1.29013 1.32502 1.41097 1.76551 2.10318 2.27124 2.34383 2.81808 2.97278 3.00467 3.58834 3.68035 3.77164 3.80010 3.95292 4.00771 4.07635 4.13653 4.21590 4.27764 4.36780 4.41606 4.42896 4.47377 4.50685 4.63357 4.65263 4.74281 4.78386 4.82147 4.83893 4.86789 4.89899 4.91656 4.96123 5.03371 5.05042 5.09743 5.14954 5.27153 5.32494 5.43007 5.44217 5.60671 5.70182 5.89149 6.01380 6.05964 6.20779 6.59070 6.64216 6.69972 7.18926 7.23696 7.41366 8.79569 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011136 B = 0.002902 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.752622 B = 9645.365890 C =11096.269233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.065 3.935 3 H 0.122 0.878 4 C 0.472 3.528 5 O -0.585 6.585 6 N -0.605 5.605 7 C 0.074 3.926 8 C 0.224 3.776 9 C -0.532 4.532 10 H 0.027 0.973 11 C 0.011 3.989 12 N -0.945 5.945 13 Si 0.947 3.053 14 H -0.278 1.278 15 H -0.275 1.275 16 H -0.238 1.238 17 N -0.494 5.494 18 C 0.047 3.953 19 C -0.106 4.106 20 C 0.161 3.839 21 N -0.714 5.714 22 C 0.390 3.610 23 C -0.260 4.260 24 C -0.040 4.040 25 C -0.237 4.237 26 C 0.136 3.864 27 N -0.570 5.570 28 C -0.112 4.112 29 C 0.037 3.963 30 H 0.054 0.946 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.090 0.910 36 H 0.047 0.953 37 H 0.015 0.985 38 H 0.268 0.732 39 H 0.017 0.983 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.096 0.904 43 H 0.055 0.945 44 H 0.407 0.593 45 H 0.122 0.878 46 H 0.149 0.851 47 H 0.158 0.842 48 H 0.181 0.819 49 H 0.083 0.917 50 H 0.066 0.934 51 H 0.040 0.960 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.187 -1.764 -17.806 22.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.047 4.047 3 H 0.140 0.860 4 C 0.260 3.740 5 O -0.466 6.466 6 N -0.336 5.336 7 C -0.068 4.068 8 C 0.101 3.899 9 C -0.571 4.571 10 H 0.045 0.955 11 C -0.187 4.187 12 N -0.585 5.585 13 Si 0.770 3.230 14 H -0.204 1.204 15 H -0.200 1.200 16 H -0.161 1.161 17 N -0.218 5.218 18 C -0.081 4.081 19 C -0.144 4.144 20 C 0.056 3.944 21 N -0.345 5.345 22 C 0.154 3.846 23 C -0.285 4.285 24 C -0.066 4.066 25 C -0.259 4.259 26 C -0.021 4.021 27 N -0.289 5.289 28 C -0.151 4.151 29 C -0.091 4.091 30 H 0.073 0.927 31 H 0.097 0.903 32 H 0.118 0.882 33 H 0.101 0.899 34 H 0.082 0.918 35 H 0.108 0.892 36 H 0.065 0.935 37 H 0.034 0.966 38 H 0.077 0.923 39 H 0.036 0.964 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.115 0.885 43 H 0.073 0.927 44 H 0.243 0.757 45 H 0.140 0.860 46 H 0.167 0.833 47 H 0.176 0.824 48 H 0.198 0.802 49 H 0.101 0.899 50 H 0.085 0.915 51 H 0.058 0.942 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -12.816 -1.459 -18.583 22.621 hybrid contribution 0.769 -1.344 2.254 2.734 sum -12.048 -2.803 -16.329 20.485 Atomic orbital electron populations 1.21843 0.89649 1.03021 1.04704 1.22138 0.99075 0.99076 0.84391 0.86030 1.22595 0.77734 0.87622 0.86012 1.90578 1.53222 1.18191 1.84628 1.48134 1.63291 1.11624 1.10569 1.22044 1.01690 0.79169 1.03922 1.19291 0.92725 0.93071 0.84837 1.21520 0.91881 1.35372 1.08283 0.95454 1.25842 0.95628 0.96460 1.00774 1.70048 1.08324 1.46409 1.33738 0.85733 0.80072 0.79065 0.78178 1.20396 1.20033 1.16106 1.62635 1.04708 1.20964 1.33445 1.22093 0.88592 1.00582 0.96867 1.21672 0.99796 0.95179 0.97742 1.20900 0.94764 0.94731 0.84033 1.44513 1.71916 1.02395 1.15709 1.18568 0.90442 0.86024 0.89548 1.21603 1.11422 0.95100 1.00390 1.21677 0.92893 0.94388 0.97625 1.22124 1.06761 1.02414 0.94611 1.22949 0.92416 0.86675 1.00091 1.67205 1.22873 1.17822 1.20969 1.21918 0.94610 1.00804 0.97788 1.22397 0.99904 0.89898 0.96943 0.92683 0.90280 0.88211 0.89916 0.91762 0.89199 0.93491 0.96650 0.92319 0.96444 0.90450 0.91239 0.88522 0.92702 0.75669 0.85999 0.83309 0.82389 0.80160 0.89857 0.91539 0.94223 0.88703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.58 8.59 71.98 0.62 -1.96 16 2 C 0.07 1.71 2.29 44.17 0.10 1.81 16 3 H 0.12 2.74 6.01 -2.39 -0.01 2.73 16 4 C 0.47 17.93 5.93 87.66 0.52 18.45 16 5 O -0.59 -27.48 11.91 -3.05 -0.04 -27.52 16 6 N -0.61 -23.52 2.86 -851.14 -2.43 -25.96 16 7 C 0.07 1.98 10.04 127.77 1.28 3.26 16 8 C 0.22 10.73 4.23 85.63 0.36 11.09 16 9 C -0.53 -31.07 9.94 25.60 0.25 -30.82 16 10 H 0.03 1.79 8.06 -2.91 -0.02 1.76 16 11 C 0.01 0.65 5.47 84.65 0.46 1.11 16 12 N -0.95 -59.80 13.96 21.45 0.30 -59.50 16 13 Si 0.95 44.47 27.47 68.60 1.88 46.36 16 14 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 15 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 16 H -0.24 -10.00 6.54 99.48 0.65 -9.35 16 17 N -0.49 -13.11 4.73 -875.51 -4.14 -17.25 16 18 C 0.05 1.45 4.90 86.33 0.42 1.87 16 19 C -0.11 -2.60 5.57 30.65 0.17 -2.43 16 20 C 0.16 4.08 2.20 45.07 0.10 4.18 16 21 N -0.71 -17.05 5.25 -324.14 -1.70 -18.75 16 22 C 0.39 10.28 7.63 133.07 1.02 11.30 16 23 C -0.26 -6.69 8.87 22.50 0.20 -6.49 16 24 C -0.04 -0.84 10.16 22.44 0.23 -0.61 16 25 C -0.24 -4.24 10.10 22.37 0.23 -4.01 16 26 C 0.14 2.69 11.17 84.62 0.95 3.63 16 27 N -0.57 -14.54 10.39 -193.25 -2.01 -16.55 16 28 C -0.11 -2.60 5.61 30.65 0.17 -2.43 16 29 C 0.04 0.98 4.63 86.33 0.40 1.38 16 30 H 0.05 1.18 6.19 -2.39 -0.01 1.16 16 31 H 0.08 1.32 7.89 -2.39 -0.02 1.30 16 32 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.08 1.66 8.12 -2.39 -0.02 1.64 16 34 H 0.06 1.88 8.07 -2.39 -0.02 1.87 16 35 H 0.09 1.90 5.83 -2.38 -0.01 1.89 16 36 H 0.05 2.08 7.13 -2.39 -0.02 2.06 16 37 H 0.02 0.80 6.85 -2.39 -0.02 0.78 16 38 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 39 H 0.02 0.71 6.04 -2.39 -0.01 0.70 16 40 H 0.08 2.30 8.12 -2.39 -0.02 2.28 16 41 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.10 1.96 8.14 -2.39 -0.02 1.95 16 43 H 0.05 1.70 6.45 -2.38 -0.02 1.69 16 44 H 0.41 8.71 8.73 -92.71 -0.81 7.90 16 45 H 0.12 3.31 6.05 -2.91 -0.02 3.30 16 46 H 0.15 2.43 8.06 -2.91 -0.02 2.40 16 47 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 48 H 0.18 2.31 8.06 -2.91 -0.02 2.29 16 49 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 50 H 0.07 1.55 7.66 -2.38 -0.02 1.53 16 51 H 0.04 1.39 5.65 -2.39 -0.01 1.38 16 52 H 0.09 2.17 5.82 -2.39 -0.01 2.16 16 Total: -1.00 -78.40 398.38 -0.59 -78.98 By element: Atomic # 1 Polarization: 30.79 SS G_CDS: 0.07 Total: 30.85 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: 7.48 Total: 9.33 kcal Atomic # 7 Polarization: -128.02 SS G_CDS: -9.98 Total: -138.00 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -0.04 Total: -27.52 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 1.88 Total: 46.36 kcal Total: -78.40 -0.59 -78.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000534861955.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.265 kcal (2) G-P(sol) polarization free energy of solvation -78.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.61 seconds