Wall clock time and date at job start Wed Apr 1 2020 05:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47313 * 2 1 4 4 O 1.42904 * 109.46890 * 239.99915 * 2 1 3 5 5 C 1.53004 * 109.47088 * 120.00303 * 2 1 3 6 6 H 1.09001 * 110.63980 * 56.84947 * 5 2 1 7 7 C 1.54593 * 110.87647 * 293.58674 * 5 2 1 8 8 C 1.53988 * 105.13853 * 219.61371 * 7 5 2 9 9 N 1.48064 * 107.14543 * 358.91767 * 8 7 5 10 10 C 1.38626 * 111.16069 * 145.63242 * 9 8 7 11 11 C 1.39162 * 120.48601 * 62.60893 * 10 9 8 12 12 C 1.39134 * 118.26914 * 179.97438 * 11 10 9 13 13 N 1.38629 * 120.48470 * 179.97438 * 12 11 10 14 14 C 1.46843 * 111.00352 * 304.21217 * 13 12 11 15 15 C 1.53041 * 109.52304 * 174.16270 * 14 13 12 16 16 C 1.53119 * 109.27940 * 59.17685 * 15 14 13 17 17 C 1.53114 * 109.16126 * 302.34737 * 16 15 14 18 18 H 1.08999 * 109.53616 * 297.69463 * 17 16 15 19 19 C 1.50707 * 109.50150 * 177.59482 * 17 16 15 20 20 H 1.07995 * 119.99939 * 240.19637 * 19 17 16 21 21 C 1.37873 * 119.99922 * 60.19907 * 19 17 16 22 22 N 1.31522 * 120.00180 * 359.97438 * 21 19 17 23 23 Si 1.86795 * 119.99962 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47675 * 89.99808 * 23 21 19 25 25 H 1.48509 * 109.46940 * 209.99662 * 23 21 19 26 26 H 1.48497 * 109.47211 * 329.99355 * 23 21 19 27 27 C 1.46847 * 110.99784 * 180.02562 * 13 12 11 28 28 N 1.33203 * 119.02654 * 0.02562 * 12 11 10 29 29 C 1.31721 * 120.88221 * 359.97438 * 28 12 11 30 30 N 1.31757 * 121.91058 * 359.72171 * 29 28 12 31 31 C 1.48537 * 105.73449 * 25.07892 * 9 8 7 32 32 H 1.08995 * 109.47079 * 300.00019 * 1 2 3 33 33 H 1.08999 * 109.47385 * 59.99537 * 1 2 3 34 34 H 1.09001 * 109.47313 * 180.02562 * 1 2 3 35 35 H 0.96700 * 114.00316 * 300.00622 * 4 2 1 36 36 H 1.09005 * 110.30927 * 338.53155 * 7 5 2 37 37 H 1.08997 * 110.30746 * 100.69589 * 7 5 2 38 38 H 1.09006 * 109.91426 * 118.12915 * 8 7 5 39 39 H 1.08998 * 109.91818 * 239.21826 * 8 7 5 40 40 H 1.07999 * 120.86990 * 359.97405 * 11 10 9 41 41 H 1.09001 * 109.46236 * 294.17360 * 14 13 12 42 42 H 1.09002 * 109.45986 * 54.14711 * 14 13 12 43 43 H 1.09009 * 109.49983 * 299.23924 * 15 14 13 44 44 H 1.09001 * 109.50337 * 179.12448 * 15 14 13 45 45 H 1.09001 * 109.52217 * 182.44191 * 16 15 14 46 46 H 1.08999 * 109.51920 * 62.25822 * 16 15 14 47 47 H 0.96991 * 120.00265 * 180.02562 * 22 21 19 48 48 H 1.09006 * 109.46736 * 305.85840 * 27 13 12 49 49 H 1.09006 * 109.46269 * 65.82751 * 27 13 12 50 50 H 1.07996 * 119.04326 * 180.02562 * 29 28 12 51 51 H 1.09002 * 110.66696 * 202.50331 * 31 9 8 52 52 H 1.09001 * 110.66368 * 79.54170 * 31 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0400 -0.7213 1.2492 6 1 1.6421 -1.7350 1.2969 7 6 1.6787 0.0690 2.5278 8 6 2.9142 -0.0533 3.4387 9 7 3.9038 -0.8897 2.7222 10 6 5.1987 -0.4766 2.9943 11 6 5.7004 -0.5343 4.2911 12 6 7.0065 -0.1085 4.5120 13 7 7.5524 -0.1457 5.7857 14 6 6.7232 0.6066 6.7359 15 6 7.2741 0.4236 8.1519 16 6 8.7205 0.9240 8.2003 17 6 9.5520 0.1580 7.1676 18 1 9.5596 -0.9024 7.4198 19 6 10.9638 0.6854 7.1674 20 1 11.3800 1.1139 6.2677 21 6 11.7240 0.6207 8.3158 22 7 11.2170 0.0992 9.4116 23 14 13.4737 1.2749 8.3157 24 1 13.4658 2.7096 8.6988 25 1 14.2894 0.5068 9.2903 26 1 14.0569 1.1284 6.9579 27 6 8.9349 0.3493 5.7803 28 7 7.7242 0.3364 3.4818 29 6 7.2130 0.3755 2.2684 30 7 5.9828 -0.0242 2.0176 31 6 3.5890 -0.7383 1.2785 32 1 -0.3633 0.5138 0.8899 33 1 -0.3634 0.5139 -0.8899 34 1 -0.3634 -1.0277 0.0005 35 1 1.7209 -1.5952 -1.2330 36 1 1.4894 1.1147 2.2854 37 1 0.8070 -0.3718 3.0114 38 1 3.3349 0.9343 3.6284 39 1 2.6356 -0.5251 4.3810 40 1 5.0919 -0.9002 5.1049 41 1 6.7396 1.6645 6.4738 42 1 5.6983 0.2381 6.6944 43 1 7.2453 -0.6326 8.4199 44 1 6.6677 0.9947 8.8549 45 1 9.1310 0.7556 9.1959 46 1 8.7452 1.9891 7.9704 47 1 11.7517 0.0541 10.2196 48 1 9.5168 -0.2061 5.0446 49 1 8.9404 1.4085 5.5228 50 1 7.8216 0.7413 1.4547 51 1 3.9753 -1.5842 0.7098 52 1 3.9914 0.1986 0.8932 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596325371.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:15 Heat of formation + Delta-G solvation = 11.884500 kcal Electronic energy + Delta-G solvation = -30782.542362 eV Core-core repulsion = 26781.929594 eV Total energy + Delta-G solvation = -4000.612767 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 2.22 seconds Orbital eigenvalues (eV) -41.29349 -39.77043 -38.33031 -37.26014 -34.44822 -33.70998 -32.38981 -31.38826 -30.50561 -30.00192 -29.51398 -28.65985 -25.22895 -24.58481 -23.98317 -23.24302 -22.52256 -21.48521 -20.84580 -20.66637 -18.83835 -17.92030 -17.25529 -17.07411 -16.55631 -16.05855 -15.59214 -15.26030 -15.20611 -14.82749 -14.59877 -14.42840 -14.20526 -13.94921 -13.89454 -13.64515 -13.25903 -13.07589 -12.89530 -12.65296 -12.54697 -12.44457 -12.20569 -12.07676 -11.88823 -11.60669 -11.35636 -10.97293 -10.96790 -10.89936 -10.72830 -10.63544 -10.62831 -10.32216 -10.21857 -10.00465 -9.89732 -9.53606 -9.20730 -9.08736 -8.76782 -8.68838 -8.33550 -7.96941 -6.00249 -4.05870 1.16123 1.30970 3.26697 3.30902 3.37718 3.41783 3.77915 3.81998 4.01269 4.08407 4.26009 4.32401 4.43010 4.50278 4.63149 4.73613 4.79031 4.81421 5.03779 5.07896 5.18312 5.28517 5.30110 5.36005 5.37161 5.39098 5.45187 5.52447 5.53355 5.59361 5.60838 5.65247 5.79833 5.82778 5.87719 6.01055 6.17191 6.22146 6.35969 6.42732 6.50968 6.65358 6.84904 6.90513 6.95756 7.16619 7.24533 7.32453 7.47800 7.61428 7.73263 7.99540 8.09871 8.37697 8.44952 8.97548 9.58602 11.06197 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.028248 B = 0.002068 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.997262 B =13536.731046 C =14273.594240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.113 3.887 3 H 0.098 0.902 4 O -0.559 6.559 5 C -0.129 4.129 6 H 0.087 0.913 7 C -0.122 4.122 8 C 0.046 3.954 9 N -0.463 5.463 10 C 0.353 3.647 11 C -0.259 4.259 12 C 0.380 3.620 13 N -0.471 5.471 14 C 0.070 3.930 15 C -0.119 4.119 16 C -0.114 4.114 17 C 0.050 3.950 18 H 0.035 0.965 19 C -0.512 4.512 20 H 0.056 0.944 21 C 0.062 3.938 22 N -0.889 5.889 23 Si 0.892 3.108 24 H -0.281 1.281 25 H -0.287 1.287 26 H -0.274 1.274 27 C 0.078 3.922 28 N -0.566 5.566 29 C 0.339 3.661 30 N -0.583 5.583 31 C 0.062 3.938 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.374 0.626 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.055 0.945 39 H 0.090 0.910 40 H 0.142 0.858 41 H 0.041 0.959 42 H 0.069 0.931 43 H 0.065 0.935 44 H 0.056 0.944 45 H 0.095 0.905 46 H 0.034 0.966 47 H 0.260 0.740 48 H 0.074 0.926 49 H 0.040 0.960 50 H 0.192 0.808 51 H 0.087 0.913 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.172 -0.125 -14.190 27.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.053 3.947 3 H 0.116 0.884 4 O -0.365 6.365 5 C -0.149 4.149 6 H 0.105 0.895 7 C -0.160 4.160 8 C -0.080 4.080 9 N -0.181 5.181 10 C 0.116 3.884 11 C -0.288 4.288 12 C 0.141 3.859 13 N -0.186 5.186 14 C -0.055 4.055 15 C -0.157 4.157 16 C -0.152 4.152 17 C 0.031 3.969 18 H 0.053 0.947 19 C -0.550 4.550 20 H 0.075 0.925 21 C -0.139 4.139 22 N -0.528 5.528 23 Si 0.720 3.280 24 H -0.208 1.208 25 H -0.213 1.213 26 H -0.199 1.199 27 C -0.047 4.047 28 N -0.288 5.288 29 C 0.048 3.952 30 N -0.306 5.306 31 C -0.065 4.065 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.222 0.778 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.073 0.927 39 H 0.108 0.892 40 H 0.160 0.840 41 H 0.059 0.941 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.075 0.925 45 H 0.114 0.886 46 H 0.052 0.948 47 H 0.070 0.930 48 H 0.092 0.908 49 H 0.058 0.942 50 H 0.209 0.791 51 H 0.105 0.895 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -22.338 -0.297 -14.382 26.569 hybrid contribution 0.356 0.690 0.495 0.921 sum -21.982 0.393 -13.887 26.005 Atomic orbital electron populations 1.22514 0.96236 1.02671 1.02863 1.21918 0.92791 0.96448 0.83525 0.88391 1.86626 1.77210 1.29100 1.43524 1.22929 0.96316 1.00554 0.95054 0.89487 1.22427 0.97670 1.00880 0.95031 1.22933 0.91052 0.95820 0.98170 1.61767 0.99367 1.47469 1.09463 1.19867 0.91245 0.88078 0.89218 1.21675 0.97567 1.11687 0.97866 1.20211 0.88219 0.86660 0.90842 1.58875 1.06562 1.51484 1.01705 1.22225 0.95305 0.94936 0.93061 1.21751 0.99401 1.01907 0.92670 1.21721 0.90923 0.97848 1.04722 1.18777 0.93347 0.97082 0.87662 0.94726 1.21087 0.97192 1.39934 0.96833 0.92541 1.24932 0.98170 0.95175 0.95602 1.69880 1.36646 1.45097 1.01202 0.86588 0.84700 0.78801 0.77883 1.20766 1.21262 1.19877 1.22360 0.82901 0.97835 1.01647 1.68523 1.39018 1.20537 1.00719 1.24549 0.88164 0.89690 0.92782 1.68315 1.08126 1.18218 1.35936 1.23063 0.93243 1.03586 0.86603 0.91396 0.91747 0.92205 0.77842 0.90713 0.90193 0.92681 0.89170 0.83971 0.94110 0.91291 0.91617 0.92506 0.88640 0.94753 0.93021 0.90752 0.94155 0.79106 0.89475 0.90643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.85 9.38 37.16 0.35 -0.50 16 2 C 0.11 0.71 3.01 -26.73 -0.08 0.63 16 3 H 0.10 0.69 8.08 -51.93 -0.42 0.27 16 4 O -0.56 -4.21 13.03 -35.23 -0.46 -4.66 16 5 C -0.13 -0.87 2.79 -88.76 -0.25 -1.12 16 6 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 7 C -0.12 -0.76 5.67 -25.38 -0.14 -0.90 16 8 C 0.05 0.41 6.24 -2.67 -0.02 0.39 16 9 N -0.46 -5.32 5.30 -169.00 -0.90 -6.22 16 10 C 0.35 5.02 6.07 -154.72 -0.94 4.08 16 11 C -0.26 -3.94 8.67 -38.91 -0.34 -4.28 16 12 C 0.38 6.73 6.40 -154.69 -0.99 5.74 16 13 N -0.47 -9.00 4.68 -173.12 -0.81 -9.81 16 14 C 0.07 1.18 5.25 -3.83 -0.02 1.16 16 15 C -0.12 -2.18 6.09 -26.65 -0.16 -2.34 16 16 C -0.11 -2.60 5.03 -26.61 -0.13 -2.73 16 17 C 0.05 1.24 2.26 -91.69 -0.21 1.04 16 18 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 19 C -0.51 -13.96 8.56 -34.44 -0.29 -14.25 16 20 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 21 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 22 N -0.89 -25.01 11.36 55.43 0.63 -24.38 16 23 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 25 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 27 C 0.08 1.70 3.89 -3.83 -0.01 1.69 16 28 N -0.57 -10.04 8.84 -13.88 -0.12 -10.17 16 29 C 0.34 5.08 12.28 -92.25 -1.13 3.95 16 30 N -0.58 -8.56 8.60 -13.89 -0.12 -8.68 16 31 C 0.06 0.62 5.12 -1.90 -0.01 0.61 16 32 H 0.07 0.27 7.50 -51.93 -0.39 -0.12 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.37 1.51 9.05 45.56 0.41 1.93 16 36 H 0.07 0.41 7.81 -51.93 -0.41 0.01 16 37 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.05 0.53 7.75 -51.93 -0.40 0.13 16 39 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.14 1.95 7.22 -52.49 -0.38 1.58 16 41 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.07 0.97 6.74 -51.93 -0.35 0.62 16 43 H 0.07 1.23 8.14 -51.92 -0.42 0.81 16 44 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.10 2.43 6.16 -51.93 -0.32 2.11 16 46 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 48 H 0.07 1.71 7.73 -51.93 -0.40 1.31 16 49 H 0.04 0.90 8.12 -51.93 -0.42 0.48 16 50 H 0.19 2.21 8.06 -52.49 -0.42 1.79 16 51 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 52 H 0.08 0.88 7.14 -51.93 -0.37 0.51 16 LS Contribution 401.69 15.07 6.05 6.05 Total: -1.00 -30.85 401.69 -13.29 -44.14 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -8.06 Total: 2.74 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: -4.48 Total: -5.23 kcal Atomic # 7 Polarization: -57.93 SS G_CDS: -1.32 Total: -59.25 kcal Atomic # 8 Polarization: -4.21 SS G_CDS: -0.46 Total: -4.66 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -30.85 -13.29 -44.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596325371.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.021 kcal (2) G-P(sol) polarization free energy of solvation -30.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.23 seconds