Wall clock time and date at job start Wed Apr 1 2020 05:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.46976 * 2 1 4 4 C 1.53002 * 109.46774 * 240.00223 * 2 1 3 5 5 N 1.46497 * 109.46618 * 184.99734 * 4 2 1 6 6 C 1.39679 * 119.99658 * 180.02562 * 5 4 2 7 7 C 1.38905 * 120.07448 * 359.72366 * 6 5 4 8 8 C 1.38110 * 119.92308 * 179.77136 * 7 6 5 9 9 C 1.38291 * 120.07396 * 0.50524 * 8 7 6 10 10 C 1.38285 * 120.14793 * 359.74860 * 9 8 7 11 11 C 1.38099 * 120.07777 * 359.97438 * 10 9 8 12 12 N 1.46503 * 109.47077 * 120.00479 * 2 1 3 13 13 C 1.34778 * 119.99891 * 274.99678 * 12 2 1 14 14 O 1.21593 * 119.99912 * 0.02562 * 13 12 2 15 15 N 1.34767 * 120.00119 * 180.02562 * 13 12 2 16 16 C 1.46497 * 120.00147 * 180.02562 * 15 13 12 17 17 C 1.53349 * 109.42224 * 275.12789 * 16 15 13 18 18 C 1.53189 * 109.15350 * 178.67121 * 17 16 15 19 19 N 1.46931 * 108.89061 * 54.57922 * 18 17 16 20 20 C 1.36938 * 120.62972 * 126.29441 * 19 18 17 21 21 H 1.08005 * 120.00173 * 331.83979 * 20 19 18 22 22 C 1.38813 * 119.99936 * 151.83343 * 20 19 18 23 23 N 1.31618 * 120.00004 * 343.08512 * 22 20 19 24 24 Si 1.86806 * 119.99953 * 163.08402 * 22 20 19 25 25 H 1.48500 * 109.46925 * 0.02562 * 24 22 20 26 26 H 1.48495 * 109.46793 * 120.00276 * 24 22 20 27 27 H 1.48498 * 109.46814 * 240.00176 * 24 22 20 28 28 C 1.46927 * 118.74004 * 306.32424 * 19 18 17 29 29 C 1.53047 * 109.46203 * 155.00199 * 16 15 13 30 30 H 1.09005 * 109.46594 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47066 * 299.99195 * 1 2 3 32 32 H 1.08997 * 109.47082 * 60.00102 * 1 2 3 33 33 H 1.08993 * 109.47255 * 304.99524 * 4 2 1 34 34 H 1.09001 * 109.47074 * 65.00165 * 4 2 1 35 35 H 0.97000 * 120.00690 * 0.02562 * 5 4 2 36 36 H 1.07995 * 120.03851 * 0.02562 * 7 6 5 37 37 H 1.07996 * 119.96442 * 180.25635 * 8 7 6 38 38 H 1.08000 * 119.92427 * 179.72606 * 9 8 7 39 39 H 1.07998 * 119.95997 * 179.97438 * 10 9 8 40 40 H 1.07996 * 120.04241 * 179.97438 * 11 10 9 41 41 H 0.96993 * 119.99959 * 94.99823 * 12 2 1 42 42 H 0.97002 * 120.00429 * 0.02562 * 15 13 12 43 43 H 1.08997 * 109.46024 * 35.03189 * 16 15 13 44 44 H 1.09001 * 109.68292 * 58.70764 * 17 16 15 45 45 H 1.08994 * 109.47524 * 298.51588 * 17 16 15 46 46 H 1.09000 * 109.58714 * 294.72587 * 18 17 16 47 47 H 1.09003 * 109.58688 * 174.43867 * 18 17 16 48 48 H 0.96996 * 119.99787 * 179.97438 * 23 22 20 49 49 H 1.09002 * 109.58255 * 173.39566 * 28 19 18 50 50 H 1.09000 * 109.58150 * 293.67300 * 28 19 18 51 51 H 1.09000 * 109.49464 * 61.43529 * 29 16 15 52 52 H 1.09005 * 109.49328 * 301.34097 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5000 -0.8263 -1.1906 6 6 4.1975 -1.4500 -2.2277 7 6 3.5078 -1.9763 -3.3125 8 6 4.2010 -2.5882 -4.3385 9 6 5.5792 -2.6865 -4.2816 10 6 6.2684 -2.1683 -3.2005 11 6 5.5820 -1.5501 -2.1739 12 7 2.0184 -0.6907 1.1961 13 6 2.1472 -0.0184 2.3571 14 8 1.8576 1.1613 2.4119 15 7 2.5969 -0.6536 3.4574 16 6 2.7363 0.0770 4.7195 17 6 4.0947 0.7878 4.7498 18 6 4.2203 1.5764 6.0571 19 7 3.9888 0.6654 7.1864 20 6 4.9051 0.5622 8.1987 21 1 5.9497 0.7552 8.0033 22 6 4.4915 0.2095 9.4760 23 7 3.2198 0.2974 9.8037 24 14 5.7399 -0.3900 10.7297 25 1 7.0926 -0.3969 10.1171 26 1 5.7343 0.5163 11.9060 27 1 5.3851 -1.7654 11.1628 28 6 2.7557 -0.1332 7.2085 29 6 2.6442 -0.9049 5.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.6054 -1.7197 -1.2952 34 1 1.7516 -0.1582 -2.1370 35 1 3.9824 -0.4627 -0.4317 36 1 2.4312 -1.9034 -3.3557 37 1 3.6658 -2.9939 -5.1842 38 1 6.1185 -3.1694 -5.0831 39 1 7.3447 -2.2472 -3.1589 40 1 6.1208 -1.1460 -1.3297 41 1 2.2490 -1.6318 1.1525 42 1 2.8282 -1.5946 3.4137 43 1 1.9389 0.8155 4.8015 44 1 4.1705 1.4711 3.9040 45 1 4.8933 0.0481 4.6930 46 1 3.4791 2.3755 6.0744 47 1 5.2202 2.0039 6.1314 48 1 2.9308 0.0506 10.6961 49 1 2.7903 -0.8357 8.0413 50 1 1.8953 0.5263 7.3223 51 1 3.4564 -1.6287 5.8222 52 1 1.6876 -1.4261 5.8531 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610778859.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:48:10 Heat of formation + Delta-G solvation = -6.112204 kcal Electronic energy + Delta-G solvation = -30018.172081 eV Core-core repulsion = 26016.778918 eV Total energy + Delta-G solvation = -4001.393163 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.32130 -40.22117 -39.22604 -37.71302 -35.95290 -35.22765 -33.98631 -32.39406 -31.72514 -31.58379 -30.67231 -29.85396 -26.91530 -26.55042 -24.24234 -23.86089 -23.49920 -22.50678 -22.04799 -21.60665 -21.05302 -19.50621 -18.66854 -18.26888 -17.65439 -16.97526 -16.82418 -16.53111 -16.40036 -16.03726 -15.56418 -15.35556 -15.22263 -14.98577 -14.90770 -14.73528 -14.57680 -14.39803 -14.18483 -14.06281 -13.78202 -13.55107 -13.28227 -13.18805 -13.02916 -12.84622 -12.63249 -12.51970 -12.23331 -12.21883 -12.01978 -11.97696 -11.87510 -11.74077 -11.55288 -11.38865 -11.20554 -10.95281 -10.57256 -10.31223 -9.76643 -9.75678 -8.71501 -8.28805 -7.88523 -5.34227 0.60210 0.78283 1.46940 1.48927 1.59699 1.68558 2.19041 2.49508 2.51287 3.07333 3.24404 3.32647 3.63881 3.66327 3.90349 4.05482 4.07923 4.13586 4.19285 4.30542 4.34520 4.44305 4.46049 4.62091 4.64565 4.64799 4.69307 4.74485 4.76059 4.81203 4.84982 4.94914 4.96839 5.06306 5.06507 5.15499 5.21892 5.29192 5.30165 5.45542 5.46543 5.56072 5.61607 5.64330 5.67496 5.70023 5.82080 6.02580 6.04436 6.38564 6.47942 6.76883 7.13821 7.14035 7.64023 7.83295 8.36320 9.18732 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015248 B = 0.001969 C = 0.001804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.808913 B =14216.400466 C =15513.547722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.154 3.846 3 H 0.070 0.930 4 C 0.127 3.873 5 N -0.747 5.747 6 C 0.206 3.794 7 C -0.208 4.208 8 C -0.080 4.080 9 C -0.194 4.194 10 C -0.083 4.083 11 C -0.215 4.215 12 N -0.728 5.728 13 C 0.701 3.299 14 O -0.634 6.634 15 N -0.727 5.727 16 C 0.183 3.817 17 C -0.122 4.122 18 C 0.144 3.856 19 N -0.608 5.608 20 C -0.262 4.262 21 H 0.067 0.933 22 C -0.051 4.051 23 N -0.935 5.935 24 Si 0.969 3.031 25 H -0.267 1.267 26 H -0.294 1.294 27 H -0.287 1.287 28 C 0.178 3.822 29 C -0.127 4.127 30 H 0.074 0.926 31 H 0.038 0.962 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.399 0.601 36 H 0.134 0.866 37 H 0.138 0.862 38 H 0.131 0.869 39 H 0.131 0.869 40 H 0.118 0.882 41 H 0.409 0.591 42 H 0.408 0.592 43 H 0.054 0.946 44 H 0.058 0.942 45 H 0.065 0.935 46 H 0.006 0.994 47 H 0.056 0.944 48 H 0.251 0.749 49 H 0.063 0.937 50 H -0.006 1.006 51 H 0.070 0.930 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.801 -9.248 -29.733 31.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.049 3.951 3 H 0.088 0.912 4 C 0.003 3.997 5 N -0.377 5.377 6 C 0.103 3.897 7 C -0.231 4.231 8 C -0.099 4.099 9 C -0.214 4.214 10 C -0.102 4.102 11 C -0.237 4.237 12 N -0.385 5.385 13 C 0.401 3.599 14 O -0.515 6.515 15 N -0.381 5.381 16 C 0.077 3.923 17 C -0.162 4.162 18 C 0.018 3.982 19 N -0.332 5.332 20 C -0.392 4.392 21 H 0.085 0.915 22 C -0.246 4.246 23 N -0.582 5.582 24 Si 0.797 3.203 25 H -0.191 1.191 26 H -0.222 1.222 27 H -0.214 1.214 28 C 0.052 3.948 29 C -0.167 4.167 30 H 0.093 0.907 31 H 0.057 0.943 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.234 0.766 36 H 0.152 0.848 37 H 0.156 0.844 38 H 0.148 0.852 39 H 0.149 0.851 40 H 0.136 0.864 41 H 0.245 0.755 42 H 0.244 0.756 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.083 0.917 46 H 0.024 0.976 47 H 0.075 0.925 48 H 0.060 0.940 49 H 0.081 0.919 50 H 0.012 0.988 51 H 0.088 0.912 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.349 -8.193 -29.577 30.780 hybrid contribution 0.793 -0.456 1.558 1.806 sum -1.556 -8.649 -28.019 29.365 Atomic orbital electron populations 1.22089 0.93660 1.03226 1.02596 1.21001 0.95016 0.96582 0.82521 0.91173 1.21668 0.80109 1.01267 0.96675 1.44700 1.05962 1.64416 1.22654 1.17987 0.91233 0.91809 0.88675 1.20866 1.00423 1.06391 0.95387 1.21211 0.94411 0.96362 0.97874 1.21183 0.94869 1.05288 1.00035 1.21135 1.00311 0.95572 0.93162 1.20798 0.92729 1.08192 1.01996 1.45050 1.71424 1.14105 1.07874 1.16136 0.77924 0.84682 0.81139 1.90912 1.58942 1.16499 1.85143 1.45138 1.70331 1.14178 1.08484 1.20512 0.96638 0.93461 0.81669 1.22219 0.97322 0.99460 0.97212 1.20965 0.98496 0.91441 0.87313 1.44347 1.21551 1.45217 1.22089 1.19546 0.89216 1.42286 0.88130 0.91517 1.25831 0.97834 1.02379 0.98586 1.70190 1.16107 1.52105 1.19754 0.85187 0.79116 0.77366 0.78634 1.19090 1.22158 1.21371 1.20571 0.86534 0.93033 0.94694 1.22243 1.01994 0.97916 0.94517 0.90707 0.94283 0.89564 0.89999 0.89604 0.76634 0.84825 0.84410 0.85150 0.85123 0.86397 0.75466 0.75578 0.92758 0.92352 0.91652 0.97602 0.92529 0.94017 0.91857 0.98765 0.91161 0.90581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 9.48 71.98 0.68 -1.47 16 2 C 0.15 2.30 2.73 44.99 0.12 2.42 16 3 H 0.07 1.44 7.58 -2.39 -0.02 1.42 16 4 C 0.13 1.28 4.47 86.38 0.39 1.67 16 5 N -0.75 -10.13 5.56 -339.42 -1.89 -12.02 16 6 C 0.21 3.27 6.65 38.21 0.25 3.52 16 7 C -0.21 -2.89 9.31 22.40 0.21 -2.69 16 8 C -0.08 -1.05 10.04 22.25 0.22 -0.83 16 9 C -0.19 -2.72 10.04 22.29 0.22 -2.49 16 10 C -0.08 -1.28 10.04 22.25 0.22 -1.05 16 11 C -0.21 -3.61 9.90 22.40 0.22 -3.39 16 12 N -0.73 -12.24 4.52 -457.80 -2.07 -14.31 16 13 C 0.70 18.67 8.49 179.06 1.52 20.19 16 14 O -0.63 -23.13 15.67 -4.01 -0.06 -23.20 16 15 N -0.73 -18.37 5.08 -457.19 -2.32 -20.69 16 16 C 0.18 6.17 2.42 45.12 0.11 6.28 16 17 C -0.12 -4.36 5.68 30.77 0.17 -4.18 16 18 C 0.14 6.30 6.50 86.36 0.56 6.86 16 19 N -0.61 -30.83 2.99 -699.08 -2.09 -32.92 16 20 C -0.26 -14.40 9.58 84.03 0.81 -13.60 16 21 H 0.07 3.59 7.89 -2.91 -0.02 3.56 16 22 C -0.05 -2.84 4.92 84.86 0.42 -2.42 16 23 N -0.94 -55.26 11.20 21.65 0.24 -55.02 16 24 Si 0.97 44.58 29.59 68.60 2.03 46.61 16 25 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 26 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 27 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 28 C 0.18 8.51 5.30 86.36 0.46 8.97 16 29 C -0.13 -4.48 5.55 30.67 0.17 -4.31 16 30 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.08 0.61 7.94 -2.39 -0.02 0.59 16 34 H 0.09 0.73 7.96 -2.39 -0.02 0.71 16 35 H 0.40 6.07 8.15 -92.71 -0.76 5.31 16 36 H 0.13 1.36 6.73 -2.91 -0.02 1.34 16 37 H 0.14 1.18 8.06 -2.91 -0.02 1.15 16 38 H 0.13 1.34 8.06 -2.91 -0.02 1.32 16 39 H 0.13 1.56 8.06 -2.91 -0.02 1.53 16 40 H 0.12 1.89 8.06 -2.91 -0.02 1.86 16 41 H 0.41 4.79 8.62 -92.71 -0.80 3.99 16 42 H 0.41 7.65 8.62 -92.71 -0.80 6.85 16 43 H 0.05 2.17 7.58 -2.39 -0.02 2.15 16 44 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 45 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 46 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 47 H 0.06 2.41 7.93 -2.39 -0.02 2.39 16 48 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 49 H 0.06 3.38 6.06 -2.39 -0.01 3.37 16 50 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 51 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 52 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 Total: -1.00 -71.14 415.92 -0.82 -71.96 By element: Atomic # 1 Polarization: 27.54 SS G_CDS: -1.42 Total: 26.12 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: 6.76 Total: 13.47 kcal Atomic # 7 Polarization: -126.83 SS G_CDS: -8.13 Total: -134.96 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -0.06 Total: -23.20 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -71.14 -0.82 -71.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610778859.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.847 kcal (2) G-P(sol) polarization free energy of solvation -71.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds