Wall clock time and date at job start Wed Apr 1 2020 03:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.47356 * 2 1 4 4 C 1.52994 * 109.47105 * 239.99492 * 2 1 3 5 5 C 1.53116 * 109.52177 * 57.34166 * 4 2 1 6 6 C 1.53176 * 109.20948 * 177.55840 * 5 4 2 7 7 N 1.46841 * 109.55629 * 300.86486 * 6 5 4 8 8 C 1.46904 * 110.99703 * 185.83947 * 7 6 5 9 9 C 1.46843 * 111.20155 * 61.73880 * 7 6 5 10 10 C 1.53039 * 109.52476 * 298.26019 * 9 7 6 11 11 N 1.46504 * 109.46781 * 119.99999 * 2 1 3 12 12 C 1.46501 * 120.00406 * 65.19947 * 11 2 1 13 13 C 1.34781 * 119.99880 * 245.19918 * 11 2 1 14 14 O 1.21581 * 119.99704 * 0.02562 * 13 11 2 15 15 N 1.34774 * 119.99896 * 179.97438 * 13 11 2 16 16 C 1.39457 * 119.99504 * 174.87029 * 15 13 11 17 17 C 1.38650 * 119.64748 * 185.42592 * 16 15 13 18 18 C 1.40814 * 118.67829 * 179.97438 * 17 16 15 19 19 C 1.41546 * 120.99917 * 179.97438 * 18 17 16 20 20 H 1.07997 * 119.99802 * 147.08572 * 19 18 17 21 21 C 1.40021 * 119.99720 * 327.07983 * 19 18 17 22 22 N 1.30749 * 120.00476 * 359.60776 * 21 19 18 23 23 Si 1.86804 * 119.99946 * 179.61163 * 21 19 18 24 24 H 1.48494 * 109.47481 * 59.99781 * 23 21 19 25 25 H 1.48504 * 109.47107 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.46744 * 299.99855 * 23 21 19 27 27 C 1.41169 * 118.00502 * 359.97438 * 18 17 16 28 28 C 1.36590 * 119.12472 * 0.02562 * 27 18 17 29 29 N 1.32070 * 121.25887 * 359.74212 * 28 27 18 30 30 H 1.08993 * 109.47356 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47042 * 300.00738 * 1 2 3 32 32 H 1.08999 * 109.46659 * 59.99851 * 1 2 3 33 33 H 1.08998 * 109.52709 * 297.21739 * 4 2 1 34 34 H 1.08997 * 109.50678 * 297.56030 * 5 4 2 35 35 H 1.09001 * 109.50699 * 57.68364 * 5 4 2 36 36 H 1.09002 * 109.44637 * 180.83208 * 6 5 4 37 37 H 1.09004 * 109.43466 * 60.88443 * 6 5 4 38 38 H 1.09001 * 109.47043 * 295.78732 * 8 7 6 39 39 H 1.08998 * 109.47177 * 55.78844 * 8 7 6 40 40 H 1.09004 * 109.46953 * 175.79311 * 8 7 6 41 41 H 1.08996 * 109.46277 * 178.23624 * 9 7 6 42 42 H 1.09005 * 109.46040 * 58.27657 * 9 7 6 43 43 H 1.08997 * 109.49747 * 299.23791 * 10 9 7 44 44 H 1.08996 * 109.50184 * 179.11860 * 10 9 7 45 45 H 1.08998 * 109.46861 * 94.99376 * 12 11 2 46 46 H 1.09004 * 109.47177 * 215.00251 * 12 11 2 47 47 H 1.09009 * 109.46663 * 334.99798 * 12 11 2 48 48 H 0.97001 * 120.00153 * 354.87576 * 15 13 11 49 49 H 1.07999 * 120.66107 * 359.97438 * 17 16 15 50 50 H 0.96993 * 120.00087 * 180.02562 * 22 21 19 51 51 H 1.07994 * 120.43620 * 179.97438 * 27 18 17 52 52 H 1.08002 * 119.37066 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.4763 -0.0402 -2.4993 6 6 2.0394 -0.7294 -3.7459 7 7 3.5052 -0.6419 -3.7362 8 6 4.0724 -1.1702 -4.9841 9 6 4.0705 -1.3297 -2.5685 10 6 3.5694 -0.6589 -1.2875 11 7 2.0183 -0.6906 1.1962 12 6 1.7607 -2.1221 1.3722 13 6 2.7045 -0.0091 2.1349 14 8 2.9179 1.1789 1.9891 15 7 3.1532 -0.6443 3.2356 16 6 3.9538 0.0339 4.1543 17 6 4.5043 -0.6550 5.2243 18 6 5.3098 0.0498 6.1393 19 6 5.8958 -0.6045 7.2493 20 1 6.8589 -0.2840 7.6183 21 6 5.2268 -1.6671 7.8688 22 7 4.0573 -2.0500 7.4269 23 14 6.0050 -2.5377 9.3269 24 1 6.2253 -1.5632 10.4255 25 1 5.1023 -3.6190 9.7973 26 1 7.3064 -3.1235 8.9166 27 6 5.5154 1.4285 5.9164 28 6 4.9311 2.0213 4.8333 29 7 4.1848 1.3284 3.9925 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5139 -0.8900 33 1 1.7185 -1.7625 -1.2254 34 1 0.3892 -0.1190 -2.4978 35 1 1.7656 1.0107 -2.5029 36 1 1.6521 -0.2380 -4.6384 37 1 1.7382 -1.7770 -3.7485 38 1 3.8487 -2.2341 -5.0630 39 1 3.6366 -0.6434 -5.8329 40 1 5.1527 -1.0253 -4.9821 41 1 5.1584 -1.2744 -2.6059 42 1 3.7598 -2.3745 -2.5768 43 1 3.8916 0.3823 -1.2721 44 1 3.9768 -1.1794 -0.4208 45 1 2.6166 -2.6923 1.0110 46 1 1.6017 -2.3354 2.4292 47 1 0.8720 -2.4034 0.8070 48 1 2.9195 -1.5732 3.3888 49 1 4.3189 -1.7111 5.3534 50 1 3.5938 -2.7858 7.8564 51 1 6.1260 2.0072 6.5937 52 1 5.0855 3.0759 4.6592 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871727186.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:24 Heat of formation + Delta-G solvation = 17.028250 kcal Electronic energy + Delta-G solvation = -31152.947043 eV Core-core repulsion = 27152.557326 eV Total energy + Delta-G solvation = -4000.389718 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.34919 -39.21662 -38.08885 -36.24033 -34.27963 -33.93291 -33.24739 -31.22275 -30.51845 -30.26638 -28.34324 -26.79101 -26.66189 -25.94305 -23.92942 -23.06922 -22.16087 -21.84162 -20.61479 -19.78111 -19.08076 -17.94142 -17.50220 -16.28094 -15.95335 -15.56701 -15.31436 -15.26349 -14.90123 -14.78410 -14.24621 -14.15642 -14.04107 -13.81350 -13.55839 -13.29221 -13.13790 -12.86600 -12.73569 -12.61772 -12.55876 -12.31513 -12.30439 -12.20949 -11.89370 -11.68992 -11.41020 -11.33310 -11.28975 -11.18902 -10.88397 -10.61394 -10.48163 -10.38917 -10.25005 -10.12911 -9.68094 -9.46201 -9.36173 -8.56852 -8.36493 -7.86052 -7.69862 -6.98609 -6.66993 -4.60538 2.72077 2.85240 2.95027 3.03211 3.06153 3.26460 3.71058 3.87239 3.90806 4.28523 4.52605 4.64782 4.67018 4.76095 4.92137 5.05694 5.08625 5.12379 5.20365 5.25448 5.29780 5.31403 5.39936 5.50508 5.53345 5.58142 5.59575 5.64441 5.67434 5.68402 5.75662 5.85400 5.88301 5.92657 6.03963 6.18377 6.21320 6.38395 6.53420 6.64951 6.78031 6.83595 6.86408 6.88355 7.00151 7.17768 7.29212 7.44218 7.52922 7.91573 8.12819 8.39042 8.49577 8.75627 8.80833 9.21520 9.74150 10.18496 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016936 B = 0.002330 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.905820 B =12016.117654 C =12089.349176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.161 3.839 3 H 0.103 0.897 4 C -0.094 4.094 5 C -0.111 4.111 6 C 0.058 3.942 7 N -0.543 5.543 8 C 0.025 3.975 9 C 0.058 3.942 10 C -0.107 4.107 11 N -0.632 5.632 12 C 0.079 3.921 13 C 0.695 3.305 14 O -0.531 6.531 15 N -0.667 5.667 16 C 0.352 3.648 17 C -0.235 4.235 18 C 0.144 3.856 19 C -0.460 4.460 20 H 0.080 0.920 21 C 0.074 3.926 22 N -0.806 5.806 23 Si 0.917 3.083 24 H -0.265 1.265 25 H -0.279 1.279 26 H -0.265 1.265 27 C -0.277 4.277 28 C 0.116 3.884 29 N -0.546 5.546 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.030 0.970 38 H 0.022 0.978 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.030 0.970 43 H 0.074 0.926 44 H 0.068 0.932 45 H 0.051 0.949 46 H 0.064 0.936 47 H 0.071 0.929 48 H 0.404 0.596 49 H 0.132 0.868 50 H 0.279 0.721 51 H 0.102 0.898 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.499 -5.022 -18.334 20.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.057 3.943 3 H 0.121 0.879 4 C -0.114 4.114 5 C -0.149 4.149 6 C -0.070 4.070 7 N -0.268 5.268 8 C -0.123 4.123 9 C -0.070 4.070 10 C -0.145 4.145 11 N -0.372 5.372 12 C -0.065 4.065 13 C 0.396 3.604 14 O -0.402 6.402 15 N -0.316 5.316 16 C 0.125 3.875 17 C -0.261 4.261 18 C 0.135 3.865 19 C -0.492 4.492 20 H 0.098 0.902 21 C -0.143 4.143 22 N -0.433 5.433 23 Si 0.741 3.259 24 H -0.190 1.190 25 H -0.204 1.204 26 H -0.189 1.189 27 C -0.300 4.300 28 C -0.038 4.038 29 N -0.265 5.265 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.048 0.952 38 H 0.041 0.959 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.048 0.952 43 H 0.092 0.908 44 H 0.087 0.913 45 H 0.070 0.930 46 H 0.082 0.918 47 H 0.090 0.910 48 H 0.240 0.760 49 H 0.149 0.851 50 H 0.090 0.910 51 H 0.120 0.880 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.789 -3.385 -19.134 20.583 hybrid contribution 0.234 -2.451 1.536 2.902 sum -6.555 -5.836 -17.598 19.665 Atomic orbital electron populations 1.22222 0.95661 1.01834 1.02419 1.20873 0.93111 0.98013 0.82351 0.87861 1.21538 0.96007 0.99633 0.94176 1.21709 0.99582 1.00814 0.92845 1.22103 0.87461 0.98650 0.98812 1.61912 1.05878 1.56597 1.02429 1.22345 1.00597 0.97347 0.91993 1.22106 0.99493 0.95036 0.90349 1.21555 0.94673 1.02286 0.95977 1.47155 1.59525 1.09023 1.21509 1.21636 1.01192 0.81893 1.01796 1.16021 0.79073 0.85350 0.79979 1.90994 1.59629 1.12419 1.77145 1.42723 1.52488 1.14985 1.21449 1.18033 0.91707 0.89570 0.88145 1.21673 1.07915 1.01055 0.95414 1.17594 0.88552 0.90100 0.90240 1.19486 1.05192 1.13006 1.11481 0.90223 1.25897 0.94273 0.95618 0.98464 1.69717 1.11985 1.23564 1.38005 0.86233 0.79686 0.79024 0.80936 1.18983 1.20372 1.18932 1.21768 1.09999 0.95887 1.02395 1.21504 0.93640 0.97859 0.90836 1.67219 1.21648 1.06170 1.31460 0.92722 0.92195 0.91386 0.91457 0.91036 0.90650 0.90872 0.95179 0.95931 0.91491 0.91374 0.90847 0.95215 0.90774 0.91345 0.93041 0.91769 0.91020 0.76030 0.85051 0.90974 0.87961 0.85989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 8.84 37.16 0.33 -1.33 16 2 C 0.16 1.99 2.20 -67.93 -0.15 1.84 16 3 H 0.10 1.59 6.91 -51.93 -0.36 1.23 16 4 C -0.09 -0.96 1.68 -90.50 -0.15 -1.11 16 5 C -0.11 -0.98 4.89 -26.58 -0.13 -1.11 16 6 C 0.06 0.49 5.47 -3.77 -0.02 0.47 16 7 N -0.54 -5.36 4.91 -242.87 -1.19 -6.55 16 8 C 0.03 0.20 9.59 60.07 0.58 0.78 16 9 C 0.06 0.60 5.46 -3.84 -0.02 0.58 16 10 C -0.11 -1.27 5.21 -26.65 -0.14 -1.41 16 11 N -0.63 -8.99 2.17 -179.67 -0.39 -9.38 16 12 C 0.08 0.83 8.97 59.85 0.54 1.37 16 13 C 0.69 13.64 8.24 -86.92 -0.72 12.93 16 14 O -0.53 -12.66 13.94 5.29 0.07 -12.58 16 15 N -0.67 -13.52 5.27 -15.86 -0.08 -13.61 16 16 C 0.35 8.68 7.42 -154.68 -1.15 7.53 16 17 C -0.23 -6.01 8.59 -38.46 -0.33 -6.34 16 18 C 0.14 3.81 5.57 -106.55 -0.59 3.22 16 19 C -0.46 -11.91 9.12 -37.65 -0.34 -12.25 16 20 H 0.08 1.97 7.85 -52.49 -0.41 1.56 16 21 C 0.07 1.81 5.41 -17.34 -0.09 1.71 16 22 N -0.81 -20.06 10.73 55.55 0.60 -19.46 16 23 Si 0.92 18.26 29.56 -169.99 -5.02 13.23 16 24 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 25 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 26 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 27 C -0.28 -6.86 9.85 -39.07 -0.38 -7.25 16 28 C 0.12 2.82 11.10 -18.04 -0.20 2.62 16 29 N -0.55 -14.22 7.86 -12.76 -0.10 -14.32 16 30 H 0.05 0.48 6.90 -51.93 -0.36 0.12 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.57 6.44 -51.93 -0.33 0.24 16 33 H 0.07 0.64 7.32 -51.93 -0.38 0.26 16 34 H 0.07 0.52 6.53 -51.93 -0.34 0.18 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 37 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.02 0.17 8.14 -51.93 -0.42 -0.26 16 39 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.76 8.12 -51.93 -0.42 0.34 16 42 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 44 H 0.07 0.91 7.77 -51.93 -0.40 0.51 16 45 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.06 0.68 6.56 -51.93 -0.34 0.34 16 47 H 0.07 0.60 6.54 -51.92 -0.34 0.26 16 48 H 0.40 6.89 6.50 -40.82 -0.27 6.62 16 49 H 0.13 3.35 6.29 -52.49 -0.33 3.02 16 50 H 0.28 6.35 8.29 -40.82 -0.34 6.01 16 51 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16 52 H 0.12 2.61 8.06 -52.49 -0.42 2.19 16 LS Contribution 402.81 15.07 6.07 6.07 Total: -1.00 -31.68 402.81 -11.52 -43.20 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: -8.49 Total: 11.14 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: -2.98 Total: 2.25 kcal Atomic # 7 Polarization: -62.14 SS G_CDS: -1.17 Total: -63.31 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: 0.07 Total: -12.58 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.02 Total: 13.23 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -31.68 -11.52 -43.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871727186.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.225 kcal (2) G-P(sol) polarization free energy of solvation -31.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds