Wall clock time and date at job start Wed Apr 1 2020 03:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.47356 * 2 1 4 4 C 1.52994 * 109.47105 * 239.99492 * 2 1 3 5 5 C 1.53116 * 109.52177 * 57.34166 * 4 2 1 6 6 C 1.53176 * 109.20948 * 177.55840 * 5 4 2 7 7 N 1.46841 * 109.55629 * 300.86486 * 6 5 4 8 8 C 1.46904 * 110.99703 * 185.83947 * 7 6 5 9 9 C 1.46843 * 111.20155 * 61.73880 * 7 6 5 10 10 C 1.53039 * 109.52476 * 298.26019 * 9 7 6 11 11 N 1.46504 * 109.46781 * 119.99999 * 2 1 3 12 12 C 1.46501 * 120.00406 * 65.19947 * 11 2 1 13 13 C 1.34781 * 119.99880 * 245.19918 * 11 2 1 14 14 O 1.21581 * 119.99704 * 0.02562 * 13 11 2 15 15 N 1.34774 * 119.99896 * 179.97438 * 13 11 2 16 16 C 1.39457 * 119.99504 * 174.87029 * 15 13 11 17 17 C 1.38650 * 119.64748 * 185.42592 * 16 15 13 18 18 C 1.40814 * 118.67829 * 179.97438 * 17 16 15 19 19 C 1.41546 * 120.99917 * 179.97438 * 18 17 16 20 20 H 1.07997 * 119.99802 * 147.08572 * 19 18 17 21 21 C 1.40021 * 119.99720 * 327.07983 * 19 18 17 22 22 N 1.30749 * 120.00476 * 359.60776 * 21 19 18 23 23 Si 1.86804 * 119.99946 * 179.61163 * 21 19 18 24 24 H 1.48494 * 109.47481 * 59.99781 * 23 21 19 25 25 H 1.48504 * 109.47107 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.46744 * 299.99855 * 23 21 19 27 27 C 1.41169 * 118.00502 * 359.97438 * 18 17 16 28 28 C 1.36590 * 119.12472 * 0.02562 * 27 18 17 29 29 N 1.32070 * 121.25887 * 359.74212 * 28 27 18 30 30 H 1.08993 * 109.47356 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47042 * 300.00738 * 1 2 3 32 32 H 1.08999 * 109.46659 * 59.99851 * 1 2 3 33 33 H 1.08998 * 109.52709 * 297.21739 * 4 2 1 34 34 H 1.08997 * 109.50678 * 297.56030 * 5 4 2 35 35 H 1.09001 * 109.50699 * 57.68364 * 5 4 2 36 36 H 1.09002 * 109.44637 * 180.83208 * 6 5 4 37 37 H 1.09004 * 109.43466 * 60.88443 * 6 5 4 38 38 H 1.09001 * 109.47043 * 295.78732 * 8 7 6 39 39 H 1.08998 * 109.47177 * 55.78844 * 8 7 6 40 40 H 1.09004 * 109.46953 * 175.79311 * 8 7 6 41 41 H 1.08996 * 109.46277 * 178.23624 * 9 7 6 42 42 H 1.09005 * 109.46040 * 58.27657 * 9 7 6 43 43 H 1.08997 * 109.49747 * 299.23791 * 10 9 7 44 44 H 1.08996 * 109.50184 * 179.11860 * 10 9 7 45 45 H 1.08998 * 109.46861 * 94.99376 * 12 11 2 46 46 H 1.09004 * 109.47177 * 215.00251 * 12 11 2 47 47 H 1.09009 * 109.46663 * 334.99798 * 12 11 2 48 48 H 0.97001 * 120.00153 * 354.87576 * 15 13 11 49 49 H 1.07999 * 120.66107 * 359.97438 * 17 16 15 50 50 H 0.96993 * 120.00087 * 180.02562 * 22 21 19 51 51 H 1.07994 * 120.43620 * 179.97438 * 27 18 17 52 52 H 1.08002 * 119.37066 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.4763 -0.0402 -2.4993 6 6 2.0394 -0.7294 -3.7459 7 7 3.5052 -0.6419 -3.7362 8 6 4.0724 -1.1702 -4.9841 9 6 4.0705 -1.3297 -2.5685 10 6 3.5694 -0.6589 -1.2875 11 7 2.0183 -0.6906 1.1962 12 6 1.7607 -2.1221 1.3722 13 6 2.7045 -0.0091 2.1349 14 8 2.9179 1.1789 1.9891 15 7 3.1532 -0.6443 3.2356 16 6 3.9538 0.0339 4.1543 17 6 4.5043 -0.6550 5.2243 18 6 5.3098 0.0498 6.1393 19 6 5.8958 -0.6045 7.2493 20 1 6.8589 -0.2840 7.6183 21 6 5.2268 -1.6671 7.8688 22 7 4.0573 -2.0500 7.4269 23 14 6.0050 -2.5377 9.3269 24 1 6.2253 -1.5632 10.4255 25 1 5.1023 -3.6190 9.7973 26 1 7.3064 -3.1235 8.9166 27 6 5.5154 1.4285 5.9164 28 6 4.9311 2.0213 4.8333 29 7 4.1848 1.3284 3.9925 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5139 -0.8900 33 1 1.7185 -1.7625 -1.2254 34 1 0.3892 -0.1190 -2.4978 35 1 1.7656 1.0107 -2.5029 36 1 1.6521 -0.2380 -4.6384 37 1 1.7382 -1.7770 -3.7485 38 1 3.8487 -2.2341 -5.0630 39 1 3.6366 -0.6434 -5.8329 40 1 5.1527 -1.0253 -4.9821 41 1 5.1584 -1.2744 -2.6059 42 1 3.7598 -2.3745 -2.5768 43 1 3.8916 0.3823 -1.2721 44 1 3.9768 -1.1794 -0.4208 45 1 2.6166 -2.6923 1.0110 46 1 1.6017 -2.3354 2.4292 47 1 0.8720 -2.4034 0.8070 48 1 2.9195 -1.5732 3.3888 49 1 4.3189 -1.7111 5.3534 50 1 3.5938 -2.7858 7.8564 51 1 6.1260 2.0072 6.5937 52 1 5.0855 3.0759 4.6592 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871727186.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:23 Heat of formation + Delta-G solvation = -1.258327 kcal Electronic energy + Delta-G solvation = -31153.740009 eV Core-core repulsion = 27152.557326 eV Total energy + Delta-G solvation = -4001.182683 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.71945 -40.45370 -39.61619 -37.42136 -36.06118 -35.61709 -34.40882 -32.41054 -32.07855 -31.29352 -30.03476 -27.90075 -27.77179 -27.44043 -24.92679 -23.87246 -23.81393 -23.47415 -21.98806 -20.82361 -20.33881 -19.53004 -19.13350 -17.63711 -17.19661 -17.08463 -16.63851 -16.34051 -16.04652 -16.01422 -15.86889 -15.54454 -15.08856 -14.98020 -14.73534 -14.68961 -14.44117 -14.31326 -14.14133 -13.88300 -13.57753 -13.28745 -13.22711 -13.16119 -13.14656 -12.84531 -12.71529 -12.64988 -12.42755 -12.23780 -12.12313 -12.09206 -11.89403 -11.50714 -11.48716 -11.37343 -11.23021 -11.17505 -11.10606 -9.84450 -9.63211 -9.58165 -9.24968 -8.82685 -8.52395 -6.57793 0.82741 1.02409 1.41892 1.53082 1.57166 1.60069 2.22337 2.29251 2.85500 2.93429 3.01445 3.61102 3.73455 3.79965 3.88768 4.09325 4.18055 4.22146 4.28727 4.33415 4.36786 4.45151 4.57410 4.59706 4.62675 4.65378 4.69630 4.73738 4.76993 4.82025 4.87476 4.88460 4.90748 4.97478 4.99681 5.01709 5.09288 5.11289 5.12312 5.22475 5.26761 5.39365 5.46781 5.50055 5.63947 5.67585 5.89329 5.99775 6.12902 6.18890 6.25693 6.56645 6.79925 6.84697 6.90732 7.60787 7.89673 8.35355 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016936 B = 0.002330 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.905820 B =12016.117654 C =12089.349176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.157 3.843 3 H 0.064 0.936 4 C -0.082 4.082 5 C -0.107 4.107 6 C 0.058 3.942 7 N -0.563 5.563 8 C 0.026 3.974 9 C 0.065 3.935 10 C -0.103 4.103 11 N -0.620 5.620 12 C 0.070 3.930 13 C 0.690 3.310 14 O -0.580 6.580 15 N -0.661 5.661 16 C 0.350 3.650 17 C -0.250 4.250 18 C 0.115 3.885 19 C -0.488 4.488 20 H 0.083 0.917 21 C 0.034 3.966 22 N -0.827 5.827 23 Si 0.992 3.008 24 H -0.263 1.263 25 H -0.267 1.267 26 H -0.259 1.259 27 C -0.289 4.289 28 C 0.109 3.891 29 N -0.573 5.573 30 H 0.079 0.921 31 H 0.038 0.962 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.057 0.943 36 H 0.086 0.914 37 H 0.041 0.959 38 H 0.030 0.970 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.041 0.959 43 H 0.040 0.960 44 H 0.049 0.951 45 H 0.063 0.937 46 H 0.065 0.935 47 H 0.106 0.894 48 H 0.417 0.583 49 H 0.128 0.872 50 H 0.289 0.711 51 H 0.118 0.882 52 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.795 -7.302 -19.255 22.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.054 3.946 3 H 0.083 0.917 4 C -0.101 4.101 5 C -0.145 4.145 6 C -0.069 4.069 7 N -0.289 5.289 8 C -0.122 4.122 9 C -0.063 4.063 10 C -0.142 4.142 11 N -0.358 5.358 12 C -0.072 4.072 13 C 0.391 3.609 14 O -0.455 6.455 15 N -0.312 5.312 16 C 0.122 3.878 17 C -0.276 4.276 18 C 0.106 3.894 19 C -0.520 4.520 20 H 0.101 0.899 21 C -0.181 4.181 22 N -0.454 5.454 23 Si 0.812 3.188 24 H -0.187 1.187 25 H -0.191 1.191 26 H -0.183 1.183 27 C -0.312 4.312 28 C -0.044 4.044 29 N -0.293 5.293 30 H 0.098 0.902 31 H 0.057 0.943 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.114 0.886 35 H 0.076 0.924 36 H 0.105 0.895 37 H 0.060 0.940 38 H 0.049 0.951 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.059 0.941 43 H 0.059 0.941 44 H 0.067 0.933 45 H 0.081 0.919 46 H 0.083 0.917 47 H 0.124 0.876 48 H 0.256 0.744 49 H 0.145 0.855 50 H 0.100 0.900 51 H 0.136 0.864 52 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -8.127 -5.711 -20.110 22.430 hybrid contribution 0.604 -1.731 1.753 2.537 sum -7.523 -7.442 -18.357 21.189 Atomic orbital electron populations 1.22166 0.93209 1.03408 1.02480 1.21027 0.94861 0.96260 0.82464 0.91741 1.21460 0.94450 1.00565 0.93638 1.21706 1.00989 0.99613 0.92229 1.22150 0.86493 0.99348 0.98927 1.61895 1.06983 1.57142 1.02831 1.22369 1.00518 0.97904 0.91363 1.21976 0.99160 0.95353 0.89838 1.21462 0.96267 1.00051 0.96373 1.47182 1.57664 1.10468 1.20483 1.21944 1.03265 0.79287 1.02717 1.16236 0.79268 0.85032 0.80390 1.90952 1.61631 1.14743 1.78200 1.42622 1.51917 1.15450 1.21181 1.18241 0.91584 0.89411 0.88540 1.21634 1.09041 1.00857 0.96075 1.18035 0.89278 0.91126 0.90946 1.19779 1.05762 1.14398 1.12011 0.89913 1.26797 0.94524 0.95656 1.01088 1.69770 1.12805 1.23766 1.39078 0.85105 0.78920 0.77837 0.76933 1.18707 1.19137 1.18299 1.21946 1.10601 0.95675 1.03009 1.21945 0.92961 0.99041 0.90445 1.67345 1.22675 1.06955 1.32287 0.90249 0.94317 0.89222 0.89313 0.88561 0.92436 0.89533 0.94045 0.95135 0.90354 0.91614 0.91532 0.94054 0.94132 0.93273 0.91851 0.91657 0.87599 0.74448 0.85454 0.90032 0.86438 0.83511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 8.84 71.98 0.64 -2.18 16 2 C 0.16 3.84 2.20 44.99 0.10 3.94 16 3 H 0.06 2.11 6.91 -2.39 -0.02 2.10 16 4 C -0.08 -1.55 1.68 -10.72 -0.02 -1.56 16 5 C -0.11 -1.66 4.89 30.69 0.15 -1.51 16 6 C 0.06 0.84 5.47 86.37 0.47 1.31 16 7 N -0.56 -10.31 4.91 -922.30 -4.53 -14.84 16 8 C 0.03 0.37 9.59 127.69 1.22 1.59 16 9 C 0.06 1.29 5.46 86.33 0.47 1.76 16 10 C -0.10 -2.51 5.21 30.65 0.16 -2.35 16 11 N -0.62 -17.50 2.17 -840.60 -1.83 -19.33 16 12 C 0.07 1.34 8.97 127.77 1.15 2.48 16 13 C 0.69 28.00 8.24 179.05 1.48 29.48 16 14 O -0.58 -29.14 13.94 -3.97 -0.06 -29.19 16 15 N -0.66 -27.58 5.27 -322.37 -1.70 -29.28 16 16 C 0.35 17.89 7.42 132.77 0.99 18.87 16 17 C -0.25 -13.23 8.59 23.00 0.20 -13.04 16 18 C 0.11 6.25 5.57 -21.11 -0.12 6.14 16 19 C -0.49 -25.66 9.12 23.52 0.21 -25.45 16 20 H 0.08 4.15 7.85 -2.91 -0.02 4.12 16 21 C 0.03 1.66 5.41 85.29 0.46 2.12 16 22 N -0.83 -41.23 10.73 21.84 0.23 -41.00 16 23 Si 0.99 36.70 29.56 68.60 2.03 38.73 16 24 H -0.26 -9.57 7.11 99.48 0.71 -8.87 16 25 H -0.27 -9.31 7.11 99.48 0.71 -8.60 16 26 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 27 C -0.29 -14.69 9.85 22.60 0.22 -14.46 16 28 C 0.11 5.49 11.10 84.27 0.94 6.43 16 29 N -0.57 -30.92 7.86 -194.27 -1.53 -32.45 16 30 H 0.08 1.07 6.90 -2.39 -0.02 1.05 16 31 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.09 1.26 6.44 -2.39 -0.02 1.24 16 33 H 0.09 1.36 7.32 -2.39 -0.02 1.34 16 34 H 0.10 1.04 6.53 -2.39 -0.02 1.02 16 35 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.09 1.04 8.09 -2.39 -0.02 1.02 16 37 H 0.04 0.52 8.14 -2.38 -0.02 0.50 16 38 H 0.03 0.38 8.14 -2.39 -0.02 0.36 16 39 H 0.08 0.90 8.09 -2.39 -0.02 0.89 16 40 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.07 1.38 8.12 -2.39 -0.02 1.37 16 42 H 0.04 0.73 8.14 -2.38 -0.02 0.71 16 43 H 0.04 1.23 8.14 -2.39 -0.02 1.22 16 44 H 0.05 1.35 7.77 -2.39 -0.02 1.33 16 45 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.06 1.26 6.56 -2.38 -0.02 1.25 16 47 H 0.11 1.34 6.54 -2.38 -0.02 1.32 16 48 H 0.42 14.44 6.50 -92.71 -0.60 13.83 16 49 H 0.13 6.70 6.29 -2.91 -0.02 6.68 16 50 H 0.29 12.96 8.29 -92.71 -0.77 12.19 16 51 H 0.12 5.43 8.06 -2.91 -0.02 5.41 16 52 H 0.15 6.39 8.06 -2.91 -0.02 6.37 16 Total: -1.00 -72.23 402.81 1.66 -70.58 By element: Atomic # 1 Polarization: 42.91 SS G_CDS: 0.32 Total: 43.22 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: 8.72 Total: 13.55 kcal Atomic # 7 Polarization: -127.54 SS G_CDS: -9.35 Total: -136.89 kcal Atomic # 8 Polarization: -29.14 SS G_CDS: -0.06 Total: -29.19 kcal Atomic # 14 Polarization: 36.70 SS G_CDS: 2.03 Total: 38.73 kcal Total: -72.23 1.66 -70.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871727186.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.317 kcal (2) G-P(sol) polarization free energy of solvation -72.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds