Wall clock time and date at job start Wed Apr 1 2020 03:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.46827 * 2 1 4 4 C 1.53000 * 109.46813 * 119.99615 * 2 1 3 5 5 C 1.53125 * 109.52348 * 295.85572 * 4 2 1 6 6 C 1.53039 * 109.27795 * 182.44296 * 5 4 2 7 7 N 1.46848 * 109.52345 * 59.17414 * 6 5 4 8 8 C 1.46902 * 110.99849 * 174.16093 * 7 6 5 9 9 C 1.46848 * 111.20193 * 298.25929 * 7 6 5 10 10 C 1.53034 * 109.52116 * 61.73936 * 9 7 6 11 11 N 1.46491 * 109.47281 * 239.99678 * 2 1 3 12 12 C 1.46502 * 120.00190 * 298.00252 * 11 2 1 13 13 C 1.34779 * 120.00076 * 118.00844 * 11 2 1 14 14 O 1.21577 * 119.99824 * 359.97438 * 13 11 2 15 15 N 1.34780 * 119.99788 * 180.02562 * 13 11 2 16 16 C 1.39462 * 119.99746 * 184.23651 * 15 13 11 17 17 C 1.38636 * 119.64842 * 173.55403 * 16 15 13 18 18 C 1.40821 * 118.67212 * 179.97438 * 17 16 15 19 19 C 1.41553 * 120.99527 * 179.97438 * 18 17 16 20 20 H 1.08004 * 119.99633 * 153.78686 * 19 18 17 21 21 C 1.40029 * 120.00099 * 333.78583 * 19 18 17 22 22 N 1.30735 * 120.00179 * 162.81455 * 21 19 18 23 23 Si 1.86804 * 119.99918 * 342.81954 * 21 19 18 24 24 H 1.48497 * 109.47149 * 93.68468 * 23 21 19 25 25 H 1.48499 * 109.46937 * 213.68571 * 23 21 19 26 26 H 1.48501 * 109.47119 * 333.68597 * 23 21 19 27 27 C 1.41161 * 118.00824 * 0.02562 * 18 17 16 28 28 C 1.36588 * 119.12509 * 359.97438 * 27 18 17 29 29 N 1.32069 * 121.26198 * 359.75096 * 28 27 18 30 30 H 1.09003 * 109.46702 * 60.00034 * 1 2 3 31 31 H 1.08991 * 109.47173 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46935 * 300.00998 * 1 2 3 33 33 H 1.08995 * 109.52469 * 56.03906 * 4 2 1 34 34 H 1.09004 * 109.49756 * 302.38111 * 5 4 2 35 35 H 1.08996 * 109.50547 * 62.50034 * 5 4 2 36 36 H 1.08998 * 109.46293 * 299.16091 * 6 5 4 37 37 H 1.08998 * 109.46360 * 179.19155 * 6 5 4 38 38 H 1.08996 * 109.47430 * 184.21527 * 8 7 6 39 39 H 1.09007 * 109.47282 * 304.21105 * 8 7 6 40 40 H 1.08997 * 109.47041 * 64.21121 * 8 7 6 41 41 H 1.08997 * 109.45460 * 301.72785 * 9 7 6 42 42 H 1.09001 * 109.46145 * 181.75834 * 9 7 6 43 43 H 1.08999 * 109.50104 * 180.88107 * 10 9 7 44 44 H 1.09003 * 109.53619 * 60.78463 * 10 9 7 45 45 H 1.09000 * 109.47154 * 264.51112 * 12 11 2 46 46 H 1.09004 * 109.46901 * 24.51278 * 12 11 2 47 47 H 1.08997 * 109.47268 * 144.50747 * 12 11 2 48 48 H 0.96998 * 119.99923 * 3.96503 * 15 13 11 49 49 H 1.07997 * 120.66232 * 0.02562 * 17 16 15 50 50 H 0.97006 * 120.00523 * 180.02562 * 22 21 19 51 51 H 1.07999 * 120.43600 * 180.02562 * 27 18 17 52 52 H 1.08003 * 119.36719 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6171 0.0575 2.4981 6 6 2.1815 -0.6351 3.7406 7 7 3.6461 -0.6905 3.6489 8 6 4.2312 -1.2240 4.8863 9 6 4.0759 -1.4735 2.4833 10 6 3.5681 -0.8059 1.2033 11 7 2.0184 -0.6906 -1.1960 12 6 1.7010 -2.1054 -1.4060 13 6 2.7598 -0.0246 -2.1033 14 8 3.0229 1.1496 -1.9293 15 7 3.2087 -0.6599 -3.2040 16 6 4.0487 0.0034 -4.0981 17 6 4.6137 -0.6943 -5.1545 18 6 5.4583 -0.0042 -6.0453 19 6 6.0615 -0.6682 -7.1402 20 1 6.3382 -0.1116 -8.0234 21 6 6.2996 -2.0467 -7.0782 22 7 6.5347 -2.7195 -8.1742 23 14 6.2811 -2.9245 -5.4293 24 1 4.9261 -3.4777 -5.1782 25 1 7.2720 -4.0304 -5.4461 26 1 6.6305 -1.9631 -4.3528 27 6 5.6861 1.3694 -5.8130 28 6 5.0849 1.9717 -4.7445 29 7 4.2939 1.2948 -3.9319 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5140 0.8899 33 1 1.6203 -1.7264 1.2864 34 1 2.0044 1.0748 2.4410 35 1 0.5292 0.0845 2.5591 36 1 1.7831 -1.6476 3.8045 37 1 1.8943 -0.0751 4.6306 38 1 5.3184 -1.1846 4.8206 39 1 3.8966 -0.6257 5.7339 40 1 3.9126 -2.2574 5.0227 41 1 3.6685 -2.4821 2.5532 42 1 5.1646 -1.5224 2.4602 43 1 3.8740 -1.3958 0.3393 44 1 3.9860 0.1978 1.1252 45 1 2.5239 -2.7203 -1.0417 46 1 0.7904 -2.3579 -0.8626 47 1 1.5524 -2.2904 -2.4698 48 1 2.9506 -1.5797 -3.3722 49 1 4.4095 -1.7458 -5.2921 50 1 6.6992 -3.6745 -8.1313 51 1 6.3267 1.9368 -6.4718 52 1 5.2569 3.0223 -4.5629 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871727187.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:31 Heat of formation + Delta-G solvation = 19.465521 kcal Electronic energy + Delta-G solvation = -31463.610484 eV Core-core repulsion = 27463.326455 eV Total energy + Delta-G solvation = -4000.284030 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.50454 -39.33916 -38.29812 -36.35590 -34.43435 -33.98969 -33.36205 -31.29304 -31.24199 -30.45730 -28.62684 -26.94879 -26.70682 -25.98055 -23.93362 -23.13739 -22.35783 -22.18927 -20.59477 -19.86106 -19.24143 -18.12663 -17.68127 -16.39881 -16.08909 -15.87123 -15.44721 -15.32697 -15.09401 -14.84373 -14.60213 -14.20659 -14.12487 -13.97169 -13.70284 -13.45267 -13.27127 -13.05535 -12.92123 -12.83758 -12.66545 -12.45143 -12.39201 -12.35659 -11.95977 -11.77091 -11.63216 -11.40409 -11.34198 -10.95110 -10.81311 -10.70437 -10.66293 -10.55484 -10.44456 -10.00403 -9.86162 -9.61031 -9.35712 -8.60764 -8.48578 -8.22281 -7.81672 -7.21674 -7.08502 -4.73538 2.44431 2.64920 2.78793 2.99629 3.12357 3.25015 3.67559 3.71607 3.87290 4.09490 4.45660 4.58012 4.60803 4.61344 4.88263 4.96293 5.02549 5.07595 5.12786 5.18128 5.22708 5.27580 5.34464 5.38869 5.46224 5.47338 5.51123 5.57020 5.57733 5.60113 5.65295 5.72375 5.80069 5.87505 5.93582 6.11233 6.12761 6.25627 6.35211 6.39704 6.42940 6.59205 6.67661 6.80974 6.83826 6.94717 7.07687 7.22632 7.31783 7.65353 7.94197 8.17299 8.23404 8.46266 8.65413 9.02780 9.53550 9.92477 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014335 B = 0.002824 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.830689 B = 9911.354719 C =10486.370719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.160 3.840 3 H 0.105 0.895 4 C -0.094 4.094 5 C -0.111 4.111 6 C 0.058 3.942 7 N -0.543 5.543 8 C 0.025 3.975 9 C 0.058 3.942 10 C -0.107 4.107 11 N -0.631 5.631 12 C 0.076 3.924 13 C 0.696 3.304 14 O -0.525 6.525 15 N -0.672 5.672 16 C 0.389 3.611 17 C -0.329 4.329 18 C 0.129 3.871 19 C -0.435 4.435 20 H 0.095 0.905 21 C 0.086 3.914 22 N -0.798 5.798 23 Si 0.920 3.080 24 H -0.272 1.272 25 H -0.292 1.292 26 H -0.245 1.245 27 C -0.274 4.274 28 C 0.130 3.870 29 N -0.554 5.554 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.030 0.970 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.022 0.978 41 H 0.029 0.971 42 H 0.073 0.927 43 H 0.067 0.933 44 H 0.074 0.926 45 H 0.052 0.948 46 H 0.074 0.926 47 H 0.062 0.938 48 H 0.402 0.598 49 H 0.106 0.894 50 H 0.288 0.712 51 H 0.109 0.891 52 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.055 -3.562 20.916 23.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.056 3.944 3 H 0.123 0.877 4 C -0.114 4.114 5 C -0.149 4.149 6 C -0.070 4.070 7 N -0.268 5.268 8 C -0.123 4.123 9 C -0.070 4.070 10 C -0.145 4.145 11 N -0.371 5.371 12 C -0.067 4.067 13 C 0.397 3.603 14 O -0.396 6.396 15 N -0.321 5.321 16 C 0.160 3.840 17 C -0.355 4.355 18 C 0.120 3.880 19 C -0.465 4.465 20 H 0.113 0.887 21 C -0.135 4.135 22 N -0.422 5.422 23 Si 0.747 3.253 24 H -0.199 1.199 25 H -0.220 1.220 26 H -0.168 1.168 27 C -0.298 4.298 28 C -0.021 4.021 29 N -0.274 5.274 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.048 0.952 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.041 0.959 41 H 0.048 0.952 42 H 0.092 0.908 43 H 0.085 0.915 44 H 0.093 0.907 45 H 0.071 0.929 46 H 0.093 0.907 47 H 0.081 0.919 48 H 0.238 0.762 49 H 0.124 0.876 50 H 0.098 0.902 51 H 0.127 0.873 52 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.022 -1.949 21.547 23.843 hybrid contribution -0.023 -2.617 -0.237 2.627 sum -10.044 -4.566 21.310 23.997 Atomic orbital electron populations 1.22204 0.95452 1.01904 1.02491 1.20909 0.93176 0.98034 0.82270 0.87726 1.21551 0.96297 0.99288 0.94258 1.21662 0.99998 1.00308 0.92926 1.22074 0.87254 0.98946 0.98726 1.61913 1.08785 1.53130 1.02979 1.22346 1.00371 0.97483 0.92086 1.22106 1.00275 0.94187 0.90433 1.21554 0.94666 1.02322 0.95953 1.47149 1.56360 1.10733 1.22850 1.21669 1.01183 0.82311 1.01584 1.15979 0.79219 0.85214 0.79876 1.91008 1.59356 1.13226 1.75967 1.42806 1.50501 1.16215 1.22604 1.17760 0.89424 0.89627 0.87194 1.21146 1.11167 1.00117 1.03086 1.17663 0.88298 0.91862 0.90151 1.19524 1.33434 0.92496 1.01001 0.88678 1.26217 0.91147 0.97562 0.98613 1.69643 1.32986 1.09926 1.29657 0.86206 0.77595 0.78466 0.83011 1.19863 1.21970 1.16800 1.21629 1.08889 0.96599 1.02662 1.21614 0.91879 0.97977 0.90636 1.67331 1.22285 1.06007 1.31737 0.92134 0.92648 0.91348 0.91517 0.90592 0.91133 0.95182 0.90822 0.91354 0.91456 0.95927 0.95231 0.90834 0.91453 0.90695 0.92946 0.90717 0.91898 0.76159 0.87625 0.90180 0.87318 0.85450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 8.95 37.16 0.33 -1.16 16 2 C 0.16 1.86 2.21 -67.93 -0.15 1.71 16 3 H 0.10 1.52 6.90 -51.93 -0.36 1.17 16 4 C -0.09 -0.92 1.59 -90.50 -0.14 -1.06 16 5 C -0.11 -0.95 5.05 -26.65 -0.13 -1.08 16 6 C 0.06 0.48 5.46 -3.83 -0.02 0.46 16 7 N -0.54 -5.34 4.91 -242.96 -1.19 -6.53 16 8 C 0.03 0.20 9.59 60.07 0.58 0.78 16 9 C 0.06 0.59 5.46 -3.83 -0.02 0.57 16 10 C -0.11 -1.25 5.13 -26.65 -0.14 -1.39 16 11 N -0.63 -8.44 1.89 -179.67 -0.34 -8.78 16 12 C 0.08 0.75 9.05 59.85 0.54 1.29 16 13 C 0.70 12.96 8.24 -86.91 -0.72 12.25 16 14 O -0.53 -11.91 13.93 5.30 0.07 -11.84 16 15 N -0.67 -12.94 5.27 -15.86 -0.08 -13.03 16 16 C 0.39 9.11 7.41 -154.67 -1.15 7.96 16 17 C -0.33 -7.94 7.08 -38.46 -0.27 -8.21 16 18 C 0.13 3.27 5.22 -106.55 -0.56 2.71 16 19 C -0.43 -11.48 9.65 -37.65 -0.36 -11.84 16 20 H 0.10 2.61 8.06 -52.48 -0.42 2.18 16 21 C 0.09 2.17 5.45 -17.35 -0.09 2.08 16 22 N -0.80 -20.48 13.92 55.55 0.77 -19.70 16 23 Si 0.92 20.23 24.43 -169.99 -4.15 16.08 16 24 H -0.27 -5.59 6.62 56.52 0.37 -5.22 16 25 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 26 H -0.24 -5.69 6.76 56.52 0.38 -5.31 16 27 C -0.27 -6.48 9.85 -39.07 -0.38 -6.87 16 28 C 0.13 3.01 11.10 -18.05 -0.20 2.81 16 29 N -0.55 -13.71 7.86 -12.76 -0.10 -13.81 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.44 6.75 -51.93 -0.35 0.09 16 32 H 0.07 0.52 6.60 -51.93 -0.34 0.18 16 33 H 0.07 0.60 7.75 -51.93 -0.40 0.20 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.49 6.67 -51.93 -0.35 0.14 16 36 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 37 H 0.07 0.54 8.09 -51.93 -0.42 0.13 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 40 H 0.02 0.17 8.14 -51.93 -0.42 -0.26 16 41 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 42 H 0.07 0.76 8.12 -51.93 -0.42 0.34 16 43 H 0.07 0.87 7.30 -51.93 -0.38 0.49 16 44 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.05 0.48 7.92 -51.93 -0.41 0.07 16 46 H 0.07 0.57 6.53 -51.93 -0.34 0.23 16 47 H 0.06 0.60 6.60 -51.93 -0.34 0.26 16 48 H 0.40 6.42 6.52 -40.82 -0.27 6.15 16 49 H 0.11 2.44 4.24 -52.49 -0.22 2.22 16 50 H 0.29 6.64 8.29 -40.82 -0.34 6.30 16 51 H 0.11 2.36 8.06 -52.49 -0.42 1.94 16 52 H 0.13 2.55 8.06 -52.48 -0.42 2.13 16 LS Contribution 396.78 15.07 5.98 5.98 Total: -1.00 -31.62 396.78 -10.37 -41.98 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -8.43 Total: 8.66 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -2.89 Total: 1.00 kcal Atomic # 7 Polarization: -60.92 SS G_CDS: -0.94 Total: -61.86 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.07 Total: -11.84 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -4.15 Total: 16.08 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.62 -10.37 -41.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871727187.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.450 kcal (2) G-P(sol) polarization free energy of solvation -31.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds