Wall clock time and date at job start Wed Apr 1 2020 03:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.46827 * 2 1 4 4 C 1.53000 * 109.46813 * 119.99615 * 2 1 3 5 5 C 1.53125 * 109.52348 * 295.85572 * 4 2 1 6 6 C 1.53039 * 109.27795 * 182.44296 * 5 4 2 7 7 N 1.46848 * 109.52345 * 59.17414 * 6 5 4 8 8 C 1.46902 * 110.99849 * 174.16093 * 7 6 5 9 9 C 1.46848 * 111.20193 * 298.25929 * 7 6 5 10 10 C 1.53034 * 109.52116 * 61.73936 * 9 7 6 11 11 N 1.46491 * 109.47281 * 239.99678 * 2 1 3 12 12 C 1.46502 * 120.00190 * 298.00252 * 11 2 1 13 13 C 1.34779 * 120.00076 * 118.00844 * 11 2 1 14 14 O 1.21577 * 119.99824 * 359.97438 * 13 11 2 15 15 N 1.34780 * 119.99788 * 180.02562 * 13 11 2 16 16 C 1.39462 * 119.99746 * 184.23651 * 15 13 11 17 17 C 1.38636 * 119.64842 * 173.55403 * 16 15 13 18 18 C 1.40821 * 118.67212 * 179.97438 * 17 16 15 19 19 C 1.41553 * 120.99527 * 179.97438 * 18 17 16 20 20 H 1.08004 * 119.99633 * 153.78686 * 19 18 17 21 21 C 1.40029 * 120.00099 * 333.78583 * 19 18 17 22 22 N 1.30735 * 120.00179 * 162.81455 * 21 19 18 23 23 Si 1.86804 * 119.99918 * 342.81954 * 21 19 18 24 24 H 1.48497 * 109.47149 * 93.68468 * 23 21 19 25 25 H 1.48499 * 109.46937 * 213.68571 * 23 21 19 26 26 H 1.48501 * 109.47119 * 333.68597 * 23 21 19 27 27 C 1.41161 * 118.00824 * 0.02562 * 18 17 16 28 28 C 1.36588 * 119.12509 * 359.97438 * 27 18 17 29 29 N 1.32069 * 121.26198 * 359.75096 * 28 27 18 30 30 H 1.09003 * 109.46702 * 60.00034 * 1 2 3 31 31 H 1.08991 * 109.47173 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46935 * 300.00998 * 1 2 3 33 33 H 1.08995 * 109.52469 * 56.03906 * 4 2 1 34 34 H 1.09004 * 109.49756 * 302.38111 * 5 4 2 35 35 H 1.08996 * 109.50547 * 62.50034 * 5 4 2 36 36 H 1.08998 * 109.46293 * 299.16091 * 6 5 4 37 37 H 1.08998 * 109.46360 * 179.19155 * 6 5 4 38 38 H 1.08996 * 109.47430 * 184.21527 * 8 7 6 39 39 H 1.09007 * 109.47282 * 304.21105 * 8 7 6 40 40 H 1.08997 * 109.47041 * 64.21121 * 8 7 6 41 41 H 1.08997 * 109.45460 * 301.72785 * 9 7 6 42 42 H 1.09001 * 109.46145 * 181.75834 * 9 7 6 43 43 H 1.08999 * 109.50104 * 180.88107 * 10 9 7 44 44 H 1.09003 * 109.53619 * 60.78463 * 10 9 7 45 45 H 1.09000 * 109.47154 * 264.51112 * 12 11 2 46 46 H 1.09004 * 109.46901 * 24.51278 * 12 11 2 47 47 H 1.08997 * 109.47268 * 144.50747 * 12 11 2 48 48 H 0.96998 * 119.99923 * 3.96503 * 15 13 11 49 49 H 1.07997 * 120.66232 * 0.02562 * 17 16 15 50 50 H 0.97006 * 120.00523 * 180.02562 * 22 21 19 51 51 H 1.07999 * 120.43600 * 180.02562 * 27 18 17 52 52 H 1.08003 * 119.36719 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6171 0.0575 2.4981 6 6 2.1815 -0.6351 3.7406 7 7 3.6461 -0.6905 3.6489 8 6 4.2312 -1.2240 4.8863 9 6 4.0759 -1.4735 2.4833 10 6 3.5681 -0.8059 1.2033 11 7 2.0184 -0.6906 -1.1960 12 6 1.7010 -2.1054 -1.4060 13 6 2.7598 -0.0246 -2.1033 14 8 3.0229 1.1496 -1.9293 15 7 3.2087 -0.6599 -3.2040 16 6 4.0487 0.0034 -4.0981 17 6 4.6137 -0.6943 -5.1545 18 6 5.4583 -0.0042 -6.0453 19 6 6.0615 -0.6682 -7.1402 20 1 6.3382 -0.1116 -8.0234 21 6 6.2996 -2.0467 -7.0782 22 7 6.5347 -2.7195 -8.1742 23 14 6.2811 -2.9245 -5.4293 24 1 4.9261 -3.4777 -5.1782 25 1 7.2720 -4.0304 -5.4461 26 1 6.6305 -1.9631 -4.3528 27 6 5.6861 1.3694 -5.8130 28 6 5.0849 1.9717 -4.7445 29 7 4.2939 1.2948 -3.9319 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5140 0.8899 33 1 1.6203 -1.7264 1.2864 34 1 2.0044 1.0748 2.4410 35 1 0.5292 0.0845 2.5591 36 1 1.7831 -1.6476 3.8045 37 1 1.8943 -0.0751 4.6306 38 1 5.3184 -1.1846 4.8206 39 1 3.8966 -0.6257 5.7339 40 1 3.9126 -2.2574 5.0227 41 1 3.6685 -2.4821 2.5532 42 1 5.1646 -1.5224 2.4602 43 1 3.8740 -1.3958 0.3393 44 1 3.9860 0.1978 1.1252 45 1 2.5239 -2.7203 -1.0417 46 1 0.7904 -2.3579 -0.8626 47 1 1.5524 -2.2904 -2.4698 48 1 2.9506 -1.5797 -3.3722 49 1 4.4095 -1.7458 -5.2921 50 1 6.6992 -3.6745 -8.1313 51 1 6.3267 1.9368 -6.4718 52 1 5.2569 3.0223 -4.5629 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871727187.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:29 Heat of formation + Delta-G solvation = 0.051246 kcal Electronic energy + Delta-G solvation = -31464.452350 eV Core-core repulsion = 27463.326455 eV Total energy + Delta-G solvation = -4001.125896 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.82169 -40.56933 -39.70150 -37.46460 -36.13705 -35.69651 -34.44347 -33.19011 -32.08747 -31.39806 -30.21006 -27.95530 -27.81268 -27.43438 -24.88641 -24.20528 -23.90459 -23.47911 -21.95293 -20.90414 -20.41579 -19.56872 -19.35241 -17.83568 -17.45650 -17.14503 -16.74422 -16.48510 -16.32766 -16.02883 -15.97149 -15.56315 -15.15642 -15.03197 -14.89213 -14.79810 -14.71347 -14.48929 -14.22854 -13.94887 -13.56935 -13.47683 -13.30906 -13.22254 -13.11035 -12.78275 -12.72173 -12.62644 -12.59807 -12.44664 -12.25743 -12.10776 -11.81427 -11.59240 -11.50367 -11.39536 -11.31590 -11.22014 -11.06731 -10.16403 -9.66350 -9.62952 -9.26129 -9.01026 -8.95030 -6.73721 0.61863 0.76725 1.21070 1.38525 1.46470 1.50987 2.08068 2.21147 2.68674 2.82489 3.00255 3.55901 3.60864 3.79118 3.87320 3.96901 4.16867 4.19759 4.27617 4.32321 4.34857 4.43513 4.45448 4.56414 4.58479 4.58826 4.60744 4.64012 4.67561 4.73356 4.76259 4.78059 4.83692 4.87988 4.96493 4.97334 5.00251 5.07307 5.11558 5.12557 5.22097 5.30150 5.38785 5.46950 5.53699 5.58163 5.72218 5.86493 6.08838 6.11915 6.17743 6.26382 6.53064 6.67324 6.80016 7.51726 7.78417 8.06036 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014335 B = 0.002824 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.830689 B = 9911.354719 C =10486.370719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.157 3.843 3 H 0.067 0.933 4 C -0.083 4.083 5 C -0.107 4.107 6 C 0.058 3.942 7 N -0.565 5.565 8 C 0.026 3.974 9 C 0.064 3.936 10 C -0.103 4.103 11 N -0.619 5.619 12 C 0.066 3.934 13 C 0.691 3.309 14 O -0.574 6.574 15 N -0.666 5.666 16 C 0.386 3.614 17 C -0.335 4.335 18 C 0.114 3.886 19 C -0.464 4.464 20 H 0.068 0.932 21 C 0.054 3.946 22 N -0.827 5.827 23 Si 0.969 3.031 24 H -0.244 1.244 25 H -0.275 1.275 26 H -0.267 1.267 27 C -0.285 4.285 28 C 0.129 3.871 29 N -0.575 5.575 30 H 0.042 0.958 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.055 0.945 35 H 0.095 0.905 36 H 0.042 0.958 37 H 0.085 0.915 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.031 0.969 41 H 0.043 0.957 42 H 0.064 0.936 43 H 0.052 0.948 44 H 0.037 0.963 45 H 0.063 0.937 46 H 0.107 0.893 47 H 0.068 0.932 48 H 0.418 0.582 49 H 0.117 0.883 50 H 0.300 0.700 51 H 0.121 0.879 52 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.231 -5.802 23.736 27.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.054 3.946 3 H 0.085 0.915 4 C -0.102 4.102 5 C -0.145 4.145 6 C -0.069 4.069 7 N -0.290 5.290 8 C -0.122 4.122 9 C -0.064 4.064 10 C -0.141 4.141 11 N -0.357 5.357 12 C -0.076 4.076 13 C 0.392 3.608 14 O -0.448 6.448 15 N -0.316 5.316 16 C 0.156 3.844 17 C -0.361 4.361 18 C 0.105 3.895 19 C -0.494 4.494 20 H 0.086 0.914 21 C -0.164 4.164 22 N -0.452 5.452 23 Si 0.793 3.207 24 H -0.169 1.169 25 H -0.202 1.202 26 H -0.192 1.192 27 C -0.309 4.309 28 C -0.022 4.022 29 N -0.295 5.295 30 H 0.061 0.939 31 H 0.098 0.902 32 H 0.106 0.894 33 H 0.108 0.892 34 H 0.074 0.926 35 H 0.114 0.886 36 H 0.060 0.940 37 H 0.103 0.897 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.049 0.951 41 H 0.061 0.939 42 H 0.083 0.917 43 H 0.071 0.929 44 H 0.056 0.944 45 H 0.082 0.918 46 H 0.126 0.874 47 H 0.086 0.914 48 H 0.257 0.743 49 H 0.134 0.866 50 H 0.111 0.889 51 H 0.139 0.861 52 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -12.246 -4.255 24.384 27.616 hybrid contribution 0.637 -1.825 -1.066 2.208 sum -11.608 -6.080 23.318 26.748 Atomic orbital electron populations 1.22147 0.92897 1.03491 1.02633 1.21046 0.94980 0.96283 0.82299 0.91505 1.21481 0.94618 1.00343 0.93767 1.21657 1.01459 0.98961 0.92443 1.22122 0.86243 0.99698 0.98839 1.61897 1.10043 1.53609 1.03434 1.22365 1.00172 0.98099 0.91518 1.21989 0.99834 0.94607 0.90002 1.21460 0.96302 0.99951 0.96391 1.47185 1.54490 1.12146 1.21865 1.22007 1.03178 0.79748 1.02715 1.16190 0.79494 0.84895 0.80211 1.90972 1.61294 1.15520 1.77008 1.42709 1.49821 1.16804 1.22285 1.17968 0.89467 0.89388 0.87557 1.21224 1.11090 1.00661 1.03132 1.17873 0.88508 0.92798 0.90297 1.19513 1.35588 0.93457 1.00886 0.91364 1.26851 0.90492 0.97622 1.01470 1.69645 1.33552 1.10943 1.31091 0.85459 0.79401 0.77471 0.78388 1.16863 1.20174 1.19162 1.21820 1.09428 0.96357 1.03270 1.22065 0.90978 0.99248 0.89909 1.67464 1.22835 1.06890 1.32307 0.93919 0.90201 0.89376 0.89181 0.92644 0.88623 0.93962 0.89657 0.91697 0.90403 0.95076 0.93924 0.91707 0.92940 0.94416 0.91807 0.87414 0.91370 0.74327 0.86574 0.88929 0.86141 0.82669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 8.95 71.98 0.64 -1.74 16 2 C 0.16 3.45 2.21 44.99 0.10 3.55 16 3 H 0.07 2.01 6.90 -2.39 -0.02 1.99 16 4 C -0.08 -1.43 1.59 -10.71 -0.02 -1.45 16 5 C -0.11 -1.57 5.05 30.65 0.15 -1.42 16 6 C 0.06 0.80 5.46 86.33 0.47 1.28 16 7 N -0.56 -10.14 4.91 -922.59 -4.53 -14.67 16 8 C 0.03 0.36 9.59 127.69 1.22 1.59 16 9 C 0.06 1.22 5.46 86.32 0.47 1.69 16 10 C -0.10 -2.37 5.13 30.64 0.16 -2.21 16 11 N -0.62 -15.64 1.89 -840.62 -1.59 -17.23 16 12 C 0.07 1.06 9.05 127.77 1.16 2.22 16 13 C 0.69 25.61 8.24 179.05 1.48 27.09 16 14 O -0.57 -26.70 13.93 -3.96 -0.06 -26.76 16 15 N -0.67 -25.11 5.27 -322.36 -1.70 -26.80 16 16 C 0.39 18.07 7.41 132.76 0.98 19.05 16 17 C -0.34 -16.12 7.08 23.00 0.16 -15.95 16 18 C 0.11 5.87 5.22 -21.11 -0.11 5.76 16 19 C -0.46 -25.30 9.65 23.52 0.23 -25.07 16 20 H 0.07 3.95 8.06 -2.91 -0.02 3.93 16 21 C 0.05 2.76 5.45 85.29 0.46 3.22 16 22 N -0.83 -42.75 13.92 21.84 0.30 -42.45 16 23 Si 0.97 40.81 24.43 68.60 1.68 42.49 16 24 H -0.24 -9.09 6.62 99.48 0.66 -8.43 16 25 H -0.28 -10.77 7.11 99.48 0.71 -10.07 16 26 H -0.27 -12.19 6.76 99.48 0.67 -11.52 16 27 C -0.29 -13.72 9.85 22.60 0.22 -13.49 16 28 C 0.13 6.01 11.10 84.27 0.94 6.94 16 29 N -0.58 -28.69 7.86 -194.27 -1.53 -30.22 16 30 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.08 0.87 6.75 -2.39 -0.02 0.85 16 32 H 0.09 1.04 6.60 -2.39 -0.02 1.02 16 33 H 0.09 1.20 7.75 -2.39 -0.02 1.19 16 34 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 35 H 0.10 0.94 6.67 -2.39 -0.02 0.92 16 36 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.09 0.99 8.09 -2.39 -0.02 0.97 16 38 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.08 0.89 8.09 -2.38 -0.02 0.87 16 40 H 0.03 0.37 8.14 -2.39 -0.02 0.35 16 41 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.06 1.33 8.12 -2.39 -0.02 1.31 16 43 H 0.05 1.33 7.30 -2.39 -0.02 1.31 16 44 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.06 0.94 7.92 -2.39 -0.02 0.92 16 46 H 0.11 1.07 6.53 -2.38 -0.02 1.06 16 47 H 0.07 1.07 6.60 -2.39 -0.02 1.05 16 48 H 0.42 12.55 6.52 -92.71 -0.60 11.95 16 49 H 0.12 5.22 4.24 -2.91 -0.01 5.21 16 50 H 0.30 13.71 8.29 -92.70 -0.77 12.94 16 51 H 0.12 5.35 8.06 -2.91 -0.02 5.33 16 52 H 0.16 6.15 8.06 -2.91 -0.02 6.12 16 Total: -1.00 -71.82 396.78 1.54 -70.28 By element: Atomic # 1 Polarization: 34.08 SS G_CDS: 0.24 Total: 34.31 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: 8.73 Total: 11.06 kcal Atomic # 7 Polarization: -122.33 SS G_CDS: -9.04 Total: -131.37 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -0.06 Total: -26.76 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 1.68 Total: 42.49 kcal Total: -71.82 1.54 -70.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871727187.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.328 kcal (2) G-P(sol) polarization free energy of solvation -71.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds