Wall clock time and date at job start Wed Apr 1 2020 03:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46944 * 2 1 4 4 C 1.52996 * 109.47328 * 239.99783 * 2 1 3 5 5 C 1.53121 * 109.52440 * 179.87397 * 4 2 1 6 6 C 1.53041 * 109.27561 * 182.50219 * 5 4 2 7 7 N 1.46847 * 109.57583 * 59.08636 * 6 5 4 8 8 C 1.46901 * 111.00211 * 174.19382 * 7 6 5 9 9 C 1.46847 * 111.19747 * 298.28834 * 7 6 5 10 10 C 1.53038 * 109.52313 * 61.73927 * 9 7 6 11 11 N 1.46500 * 109.47194 * 119.99648 * 2 1 3 12 12 C 1.46496 * 119.99937 * 59.99892 * 11 2 1 13 13 C 1.34785 * 119.99883 * 240.00139 * 11 2 1 14 14 O 1.21569 * 120.00212 * 0.02562 * 13 11 2 15 15 N 1.34776 * 119.99696 * 179.97438 * 13 11 2 16 16 C 1.39240 * 119.99889 * 184.90135 * 15 13 11 17 17 C 1.39689 * 119.57757 * 174.54246 * 16 15 13 18 18 C 1.38644 * 119.49545 * 179.97438 * 17 16 15 19 19 C 1.38354 * 118.67518 * 0.02562 * 18 17 16 20 20 C 1.40571 * 119.12568 * 359.97438 * 19 18 17 21 21 C 1.41342 * 119.78278 * 180.02562 * 20 19 18 22 22 H 1.07991 * 120.00100 * 5.35036 * 21 20 19 23 23 C 1.40032 * 119.99774 * 185.34733 * 21 20 19 24 24 N 1.30740 * 119.99936 * 354.68626 * 23 21 20 25 25 Si 1.86795 * 119.99616 * 174.67738 * 23 21 20 26 26 H 1.48500 * 109.46693 * 95.00546 * 25 23 21 27 27 H 1.48501 * 109.47110 * 214.99982 * 25 23 21 28 28 H 1.48497 * 109.47712 * 335.00150 * 25 23 21 29 29 N 1.31909 * 119.57818 * 354.26639 * 16 15 13 30 30 H 1.09002 * 109.46853 * 60.00340 * 1 2 3 31 31 H 1.09001 * 109.46944 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47509 * 300.00350 * 1 2 3 33 33 H 1.08998 * 109.52269 * 300.00089 * 4 2 1 34 34 H 1.09000 * 109.50421 * 302.37974 * 5 4 2 35 35 H 1.08999 * 109.50271 * 62.49612 * 5 4 2 36 36 H 1.08997 * 109.41207 * 299.06939 * 6 5 4 37 37 H 1.09003 * 109.45530 * 179.12631 * 6 5 4 38 38 H 1.09001 * 109.47406 * 184.20699 * 8 7 6 39 39 H 1.09003 * 109.46828 * 304.20879 * 8 7 6 40 40 H 1.08996 * 109.47473 * 64.20847 * 8 7 6 41 41 H 1.09007 * 109.46219 * 301.72926 * 9 7 6 42 42 H 1.08997 * 109.46568 * 181.75749 * 9 7 6 43 43 H 1.09002 * 109.50867 * 180.87933 * 10 9 7 44 44 H 1.09004 * 109.50228 * 60.76758 * 10 9 7 45 45 H 1.09004 * 109.47290 * 270.00331 * 12 11 2 46 46 H 1.08998 * 109.46952 * 30.00228 * 12 11 2 47 47 H 1.08997 * 109.46931 * 150.00190 * 12 11 2 48 48 H 0.97004 * 120.00294 * 5.17920 * 15 13 11 49 49 H 1.07998 * 120.24994 * 359.95618 * 17 16 15 50 50 H 1.08006 * 120.66311 * 180.02562 * 18 17 16 51 51 H 1.07996 * 120.43578 * 179.97438 * 19 18 17 52 52 H 0.96998 * 120.00079 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5712 -0.7192 -1.2519 6 6 4.0750 -1.3865 -2.5337 7 7 3.5634 -0.6579 -3.7016 8 6 4.1379 -1.1873 -4.9456 9 6 2.0958 -0.6881 -3.7451 10 6 1.5329 0.0014 -2.5002 11 7 2.0183 -0.6905 1.1962 12 6 1.6644 -2.0931 1.4281 13 6 2.7932 -0.0354 2.0834 14 8 3.0865 1.1286 1.8912 15 7 3.2420 -0.6706 3.1841 16 6 3.9563 0.0323 4.1508 17 6 4.3182 -0.6051 5.3400 18 6 5.0299 0.0962 6.3012 19 6 5.3614 1.4158 6.0505 20 6 4.9682 2.0009 4.8343 21 6 5.2999 3.3479 4.5636 22 1 5.9266 3.8981 5.2498 23 6 4.8159 3.9690 3.4057 24 7 4.1447 3.2755 2.5237 25 14 5.1292 5.7884 3.1213 26 1 6.3400 5.9563 2.2781 27 1 3.9592 6.3905 2.4328 28 1 5.3373 6.4650 4.4267 29 7 4.2873 1.2899 3.9297 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.6772 -1.7491 -1.2500 34 1 3.9338 0.3079 -1.2107 35 1 3.9374 -1.2700 -0.3856 36 1 3.7244 -2.4180 -2.5670 37 1 5.1649 -1.3727 -2.5460 38 1 3.8007 -0.5829 -5.7877 39 1 5.2258 -1.1535 -4.8866 40 1 3.8136 -2.2184 -5.0857 41 1 1.7545 -1.7230 -3.7727 42 1 1.7481 -0.1673 -4.6373 43 1 0.4438 -0.0350 -2.5251 44 1 1.8625 1.0402 -2.4792 45 1 0.7375 -2.1442 1.9994 46 1 1.5295 -2.5968 0.4710 47 1 2.4628 -2.5817 1.9865 48 1 3.0709 -1.6182 3.3009 49 1 4.0455 -1.6363 5.5094 50 1 5.3198 -0.3782 7.2271 51 1 5.9148 1.9888 6.7796 52 1 3.8091 3.7058 1.7218 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881149103.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:36 Heat of formation + Delta-G solvation = 41.835754 kcal Electronic energy + Delta-G solvation = -32096.227720 eV Core-core repulsion = 28096.913737 eV Total energy + Delta-G solvation = -3999.313984 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -40.10056 -38.99283 -37.77236 -35.97775 -34.04872 -33.43623 -32.80645 -31.07532 -30.31702 -30.13282 -28.65263 -26.66340 -26.49085 -25.45890 -23.75261 -22.94493 -22.19456 -21.28168 -20.51692 -19.63102 -18.73213 -18.04016 -16.86301 -16.27221 -16.00175 -15.29387 -15.13474 -14.96430 -14.72791 -14.53252 -14.36132 -13.94687 -13.79349 -13.52559 -13.38071 -13.01383 -12.87452 -12.80317 -12.63564 -12.51234 -12.28279 -12.16927 -11.94462 -11.85567 -11.70055 -11.58246 -11.18276 -11.14406 -11.09688 -10.88463 -10.59498 -10.42799 -10.40396 -10.34879 -10.22657 -9.87891 -9.58985 -8.97801 -8.95422 -8.45326 -8.04909 -7.88261 -7.13968 -6.87198 -6.05075 -4.32250 2.90222 3.17697 3.20309 3.22709 3.24892 3.33172 3.81681 4.12962 4.24359 4.47864 4.69676 4.78044 4.80316 5.01339 5.04108 5.16955 5.19690 5.23692 5.31103 5.38541 5.42707 5.46468 5.51148 5.59773 5.65515 5.67255 5.72611 5.75583 5.80764 5.90542 6.01302 6.05893 6.08642 6.13561 6.18499 6.35132 6.36093 6.52251 6.56605 6.66431 6.86154 6.91180 6.95396 6.98207 7.08993 7.29211 7.43974 7.68087 7.79749 7.87533 8.23235 8.34953 8.70089 8.86021 9.13029 9.66059 10.33895 10.56413 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010541 B = 0.003554 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2655.634573 B = 7875.620571 C = 9191.151763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.163 3.837 3 H 0.106 0.894 4 C -0.093 4.093 5 C -0.105 4.105 6 C 0.058 3.942 7 N -0.543 5.543 8 C 0.026 3.974 9 C 0.059 3.941 10 C -0.111 4.111 11 N -0.636 5.636 12 C 0.083 3.917 13 C 0.668 3.332 14 O -0.458 6.458 15 N -0.673 5.673 16 C 0.387 3.613 17 C -0.359 4.359 18 C -0.036 4.036 19 C -0.308 4.308 20 C 0.271 3.729 21 C -0.426 4.426 22 H 0.081 0.919 23 C 0.057 3.943 24 N -0.647 5.647 25 Si 0.892 3.108 26 H -0.272 1.272 27 H -0.278 1.278 28 H -0.264 1.264 29 N -0.471 5.471 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.027 0.973 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.021 0.979 41 H 0.029 0.971 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.046 0.954 46 H 0.064 0.936 47 H 0.059 0.941 48 H 0.393 0.607 49 H 0.089 0.911 50 H 0.095 0.905 51 H 0.095 0.905 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.978 -11.193 -12.682 18.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.059 3.941 3 H 0.124 0.876 4 C -0.113 4.113 5 C -0.143 4.143 6 C -0.069 4.069 7 N -0.268 5.268 8 C -0.122 4.122 9 C -0.069 4.069 10 C -0.149 4.149 11 N -0.378 5.378 12 C -0.061 4.061 13 C 0.367 3.633 14 O -0.322 6.322 15 N -0.323 5.323 16 C 0.147 3.853 17 C -0.386 4.386 18 C -0.060 4.060 19 C -0.331 4.331 20 C 0.146 3.854 21 C -0.456 4.456 22 H 0.099 0.901 23 C -0.172 4.172 24 N -0.265 5.265 25 Si 0.717 3.283 26 H -0.198 1.198 27 H -0.203 1.203 28 H -0.188 1.188 29 N -0.189 5.189 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.045 0.955 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.040 0.960 41 H 0.047 0.953 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.094 0.906 45 H 0.064 0.936 46 H 0.083 0.917 47 H 0.078 0.922 48 H 0.228 0.772 49 H 0.107 0.893 50 H 0.113 0.887 51 H 0.113 0.887 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.973 -9.328 -13.808 18.064 hybrid contribution -0.032 -1.335 0.690 1.503 sum -7.005 -10.664 -13.119 18.300 Atomic orbital electron populations 1.22182 0.95914 1.01532 1.02204 1.20790 0.92781 0.98240 0.82338 0.87633 1.21527 0.96117 0.99253 0.94418 1.21527 0.94608 1.02538 0.95612 1.22113 0.99740 0.94536 0.90535 1.61904 1.06977 1.55324 1.02554 1.22339 1.00343 0.97396 0.92165 1.22072 0.87323 0.98672 0.98853 1.21672 0.99622 1.00732 0.92922 1.47254 1.55166 1.11448 1.23976 1.21538 0.99884 0.83459 1.01263 1.16373 0.80410 0.86043 0.80456 1.91369 1.56076 1.11887 1.72867 1.42744 1.57256 1.11736 1.20594 1.18364 0.90496 0.91148 0.85282 1.20426 1.19649 1.00234 0.98247 1.20534 0.95207 0.94092 0.96186 1.21615 1.14061 0.96216 1.01183 1.18389 0.87648 0.92841 0.86493 1.19561 1.26337 0.94745 1.04995 0.90073 1.26169 0.95479 0.99228 0.96329 1.70341 1.17271 1.34588 1.04305 0.86559 0.78577 0.83869 0.79307 1.19793 1.20316 1.18782 1.68704 1.17310 1.02526 1.30372 0.91689 0.93007 0.92304 0.91837 0.90520 0.91439 0.95461 0.90958 0.91512 0.91439 0.96044 0.95315 0.90976 0.91231 0.90589 0.93557 0.91686 0.92226 0.77170 0.89325 0.88727 0.88667 0.91669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 8.85 37.16 0.33 -1.50 16 2 C 0.16 2.25 2.23 -67.93 -0.15 2.10 16 3 H 0.11 1.84 6.90 -51.93 -0.36 1.49 16 4 C -0.09 -1.08 1.68 -90.50 -0.15 -1.23 16 5 C -0.11 -1.42 5.19 -26.65 -0.14 -1.56 16 6 C 0.06 0.68 5.46 -3.83 -0.02 0.66 16 7 N -0.54 -6.11 4.91 -242.95 -1.19 -7.31 16 8 C 0.03 0.23 9.59 60.07 0.58 0.81 16 9 C 0.06 0.58 5.46 -3.83 -0.02 0.56 16 10 C -0.11 -1.15 4.95 -26.65 -0.13 -1.28 16 11 N -0.64 -9.66 2.05 -179.68 -0.37 -10.03 16 12 C 0.08 0.92 9.30 59.84 0.56 1.47 16 13 C 0.67 13.83 8.24 -86.91 -0.72 13.11 16 14 O -0.46 -11.67 11.43 5.30 0.06 -11.61 16 15 N -0.67 -13.73 5.26 -15.78 -0.08 -13.81 16 16 C 0.39 9.64 7.43 -155.00 -1.15 8.49 16 17 C -0.36 -8.25 9.96 -38.89 -0.39 -8.63 16 18 C -0.04 -0.83 10.15 -39.39 -0.40 -1.23 16 19 C -0.31 -7.90 9.83 -38.66 -0.38 -8.28 16 20 C 0.27 7.76 6.55 -85.00 -0.56 7.21 16 21 C -0.43 -11.92 9.13 -37.73 -0.34 -12.27 16 22 H 0.08 2.13 7.85 -52.49 -0.41 1.72 16 23 C 0.06 1.54 5.49 -17.34 -0.10 1.45 16 24 N -0.65 -18.17 9.01 55.55 0.50 -17.67 16 25 Si 0.89 19.63 29.56 -169.99 -5.03 14.60 16 26 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 27 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 28 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 29 N -0.47 -13.43 5.75 -10.26 -0.06 -13.49 16 30 H 0.06 0.64 6.49 -51.93 -0.34 0.30 16 31 H 0.05 0.51 7.67 -51.93 -0.40 0.12 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.67 6.67 -51.93 -0.35 0.33 16 34 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.07 1.00 7.69 -51.93 -0.40 0.60 16 36 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 37 H 0.07 0.85 8.09 -51.93 -0.42 0.43 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 40 H 0.02 0.18 8.14 -51.93 -0.42 -0.25 16 41 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 43 H 0.07 0.61 6.58 -51.93 -0.34 0.26 16 44 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.06 0.60 6.43 -51.93 -0.33 0.26 16 47 H 0.06 0.62 6.29 -51.93 -0.33 0.29 16 48 H 0.39 6.37 6.39 -40.82 -0.26 6.11 16 49 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 50 H 0.09 1.86 8.06 -52.48 -0.42 1.44 16 51 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 52 H 0.27 7.18 8.29 -40.82 -0.34 6.85 16 LS Contribution 399.66 15.07 6.02 6.02 Total: -1.00 -32.90 399.66 -11.89 -44.79 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: -8.56 Total: 8.64 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -3.18 Total: -0.13 kcal Atomic # 7 Polarization: -61.11 SS G_CDS: -1.20 Total: -62.31 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.06 Total: -11.61 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.03 Total: 14.60 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.90 -11.89 -44.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881149103.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.626 kcal (2) G-P(sol) polarization free energy of solvation -32.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds