Wall clock time and date at job start Wed Apr 1 2020 03:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46944 * 2 1 4 4 C 1.52996 * 109.47328 * 239.99783 * 2 1 3 5 5 C 1.53121 * 109.52440 * 179.87397 * 4 2 1 6 6 C 1.53041 * 109.27561 * 182.50219 * 5 4 2 7 7 N 1.46847 * 109.57583 * 59.08636 * 6 5 4 8 8 C 1.46901 * 111.00211 * 174.19382 * 7 6 5 9 9 C 1.46847 * 111.19747 * 298.28834 * 7 6 5 10 10 C 1.53038 * 109.52313 * 61.73927 * 9 7 6 11 11 N 1.46500 * 109.47194 * 119.99648 * 2 1 3 12 12 C 1.46496 * 119.99937 * 59.99892 * 11 2 1 13 13 C 1.34785 * 119.99883 * 240.00139 * 11 2 1 14 14 O 1.21569 * 120.00212 * 0.02562 * 13 11 2 15 15 N 1.34776 * 119.99696 * 179.97438 * 13 11 2 16 16 C 1.39240 * 119.99889 * 184.90135 * 15 13 11 17 17 C 1.39689 * 119.57757 * 174.54246 * 16 15 13 18 18 C 1.38644 * 119.49545 * 179.97438 * 17 16 15 19 19 C 1.38354 * 118.67518 * 0.02562 * 18 17 16 20 20 C 1.40571 * 119.12568 * 359.97438 * 19 18 17 21 21 C 1.41342 * 119.78278 * 180.02562 * 20 19 18 22 22 H 1.07991 * 120.00100 * 5.35036 * 21 20 19 23 23 C 1.40032 * 119.99774 * 185.34733 * 21 20 19 24 24 N 1.30740 * 119.99936 * 354.68626 * 23 21 20 25 25 Si 1.86795 * 119.99616 * 174.67738 * 23 21 20 26 26 H 1.48500 * 109.46693 * 95.00546 * 25 23 21 27 27 H 1.48501 * 109.47110 * 214.99982 * 25 23 21 28 28 H 1.48497 * 109.47712 * 335.00150 * 25 23 21 29 29 N 1.31909 * 119.57818 * 354.26639 * 16 15 13 30 30 H 1.09002 * 109.46853 * 60.00340 * 1 2 3 31 31 H 1.09001 * 109.46944 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47509 * 300.00350 * 1 2 3 33 33 H 1.08998 * 109.52269 * 300.00089 * 4 2 1 34 34 H 1.09000 * 109.50421 * 302.37974 * 5 4 2 35 35 H 1.08999 * 109.50271 * 62.49612 * 5 4 2 36 36 H 1.08997 * 109.41207 * 299.06939 * 6 5 4 37 37 H 1.09003 * 109.45530 * 179.12631 * 6 5 4 38 38 H 1.09001 * 109.47406 * 184.20699 * 8 7 6 39 39 H 1.09003 * 109.46828 * 304.20879 * 8 7 6 40 40 H 1.08996 * 109.47473 * 64.20847 * 8 7 6 41 41 H 1.09007 * 109.46219 * 301.72926 * 9 7 6 42 42 H 1.08997 * 109.46568 * 181.75749 * 9 7 6 43 43 H 1.09002 * 109.50867 * 180.87933 * 10 9 7 44 44 H 1.09004 * 109.50228 * 60.76758 * 10 9 7 45 45 H 1.09004 * 109.47290 * 270.00331 * 12 11 2 46 46 H 1.08998 * 109.46952 * 30.00228 * 12 11 2 47 47 H 1.08997 * 109.46931 * 150.00190 * 12 11 2 48 48 H 0.97004 * 120.00294 * 5.17920 * 15 13 11 49 49 H 1.07998 * 120.24994 * 359.95618 * 17 16 15 50 50 H 1.08006 * 120.66311 * 180.02562 * 18 17 16 51 51 H 1.07996 * 120.43578 * 179.97438 * 19 18 17 52 52 H 0.96998 * 120.00079 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5712 -0.7192 -1.2519 6 6 4.0750 -1.3865 -2.5337 7 7 3.5634 -0.6579 -3.7016 8 6 4.1379 -1.1873 -4.9456 9 6 2.0958 -0.6881 -3.7451 10 6 1.5329 0.0014 -2.5002 11 7 2.0183 -0.6905 1.1962 12 6 1.6644 -2.0931 1.4281 13 6 2.7932 -0.0354 2.0834 14 8 3.0865 1.1286 1.8912 15 7 3.2420 -0.6706 3.1841 16 6 3.9563 0.0323 4.1508 17 6 4.3182 -0.6051 5.3400 18 6 5.0299 0.0962 6.3012 19 6 5.3614 1.4158 6.0505 20 6 4.9682 2.0009 4.8343 21 6 5.2999 3.3479 4.5636 22 1 5.9266 3.8981 5.2498 23 6 4.8159 3.9690 3.4057 24 7 4.1447 3.2755 2.5237 25 14 5.1292 5.7884 3.1213 26 1 6.3400 5.9563 2.2781 27 1 3.9592 6.3905 2.4328 28 1 5.3373 6.4650 4.4267 29 7 4.2873 1.2899 3.9297 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.6772 -1.7491 -1.2500 34 1 3.9338 0.3079 -1.2107 35 1 3.9374 -1.2700 -0.3856 36 1 3.7244 -2.4180 -2.5670 37 1 5.1649 -1.3727 -2.5460 38 1 3.8007 -0.5829 -5.7877 39 1 5.2258 -1.1535 -4.8866 40 1 3.8136 -2.2184 -5.0857 41 1 1.7545 -1.7230 -3.7727 42 1 1.7481 -0.1673 -4.6373 43 1 0.4438 -0.0350 -2.5251 44 1 1.8625 1.0402 -2.4792 45 1 0.7375 -2.1442 1.9994 46 1 1.5295 -2.5968 0.4710 47 1 2.4628 -2.5817 1.9865 48 1 3.0709 -1.6182 3.3009 49 1 4.0455 -1.6363 5.5094 50 1 5.3198 -0.3782 7.2271 51 1 5.9148 1.9888 6.7796 52 1 3.8091 3.7058 1.7218 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881149103.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:35 Heat of formation + Delta-G solvation = 22.232488 kcal Electronic energy + Delta-G solvation = -32097.077782 eV Core-core repulsion = 28096.913737 eV Total energy + Delta-G solvation = -4000.164045 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.47259 -40.29462 -39.38357 -37.25510 -35.86909 -34.99058 -34.25733 -32.19574 -32.05130 -31.36798 -30.35607 -27.69142 -27.47300 -27.31745 -24.88164 -23.86887 -23.72455 -23.12238 -21.88570 -20.72272 -20.14538 -19.72013 -18.53706 -17.91321 -17.03922 -16.69001 -16.30269 -16.26473 -16.18345 -16.00944 -15.62818 -15.50440 -14.92525 -14.83101 -14.68898 -14.61175 -14.22449 -14.07738 -13.75967 -13.62905 -13.52051 -13.27559 -13.20752 -13.07199 -12.90354 -12.70861 -12.65729 -12.54432 -12.42406 -12.29212 -12.19427 -12.09275 -11.76262 -11.50271 -11.43538 -11.32773 -11.18519 -10.84267 -10.69208 -9.86968 -9.36159 -9.22846 -9.06787 -8.73771 -8.00700 -6.39000 0.98790 1.30310 1.38886 1.50479 1.54589 1.80049 2.27313 2.60754 3.01352 3.06085 3.12512 3.66970 3.82535 3.91040 4.09093 4.19510 4.28277 4.29466 4.33445 4.35399 4.40735 4.51308 4.57082 4.60049 4.64246 4.68193 4.74073 4.74874 4.80481 4.84414 4.88442 4.91790 4.98286 5.00053 5.00269 5.01211 5.09321 5.12295 5.15410 5.26464 5.30599 5.40739 5.51739 5.67808 5.83632 5.89612 5.95917 6.08646 6.14116 6.19593 6.28993 6.43615 6.84610 7.08875 7.20701 8.06178 8.41128 8.60307 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010541 B = 0.003554 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2655.634573 B = 7875.620571 C = 9191.151763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.161 3.839 3 H 0.056 0.944 4 C -0.080 4.080 5 C -0.099 4.099 6 C 0.066 3.934 7 N -0.567 5.567 8 C 0.027 3.973 9 C 0.060 3.940 10 C -0.108 4.108 11 N -0.627 5.627 12 C 0.075 3.925 13 C 0.658 3.342 14 O -0.513 6.513 15 N -0.663 5.663 16 C 0.365 3.635 17 C -0.347 4.347 18 C -0.033 4.033 19 C -0.332 4.332 20 C 0.237 3.763 21 C -0.467 4.467 22 H 0.085 0.915 23 C 0.011 3.989 24 N -0.682 5.682 25 Si 0.970 3.030 26 H -0.267 1.267 27 H -0.274 1.274 28 H -0.254 1.254 29 N -0.506 5.506 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.035 0.965 33 H 0.090 0.910 34 H 0.030 0.970 35 H 0.050 0.950 36 H 0.045 0.955 37 H 0.063 0.937 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.033 0.967 41 H 0.045 0.955 42 H 0.085 0.915 43 H 0.095 0.905 44 H 0.050 0.950 45 H 0.062 0.938 46 H 0.094 0.906 47 H 0.067 0.933 48 H 0.413 0.587 49 H 0.130 0.870 50 H 0.137 0.863 51 H 0.104 0.896 52 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.526 -13.933 -13.555 21.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.057 3.943 3 H 0.075 0.925 4 C -0.099 4.099 5 C -0.137 4.137 6 C -0.062 4.062 7 N -0.292 5.292 8 C -0.121 4.121 9 C -0.067 4.067 10 C -0.146 4.146 11 N -0.367 5.367 12 C -0.067 4.067 13 C 0.358 3.642 14 O -0.381 6.381 15 N -0.315 5.315 16 C 0.125 3.875 17 C -0.373 4.373 18 C -0.057 4.057 19 C -0.355 4.355 20 C 0.112 3.888 21 C -0.498 4.498 22 H 0.103 0.897 23 C -0.215 4.215 24 N -0.301 5.301 25 Si 0.791 3.209 26 H -0.192 1.192 27 H -0.199 1.199 28 H -0.178 1.178 29 N -0.225 5.225 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.054 0.946 33 H 0.109 0.891 34 H 0.049 0.951 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.052 0.948 41 H 0.063 0.937 42 H 0.103 0.897 43 H 0.113 0.887 44 H 0.068 0.932 45 H 0.080 0.920 46 H 0.112 0.888 47 H 0.086 0.914 48 H 0.252 0.748 49 H 0.148 0.852 50 H 0.155 0.845 51 H 0.122 0.878 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.556 -12.159 -14.696 20.905 hybrid contribution 0.430 -0.678 1.000 1.282 sum -8.125 -12.837 -13.696 20.454 Atomic orbital electron populations 1.22101 0.93415 1.03217 1.02039 1.20856 0.94518 0.96064 0.82849 0.92548 1.21433 0.94344 1.00375 0.93748 1.21397 0.96355 0.99617 0.96308 1.21970 0.99294 0.95091 0.89810 1.61871 1.08205 1.56045 1.03121 1.22360 1.00178 0.98193 0.91330 1.22107 0.86300 0.99575 0.98721 1.21666 1.01108 0.99168 0.92672 1.47195 1.53527 1.13051 1.22958 1.21850 1.00798 0.80666 1.03389 1.16686 0.80741 0.85798 0.80989 1.91357 1.58111 1.14502 1.74140 1.42606 1.56535 1.12486 1.19875 1.18877 0.90778 0.90826 0.87010 1.20903 1.17606 1.01886 0.96906 1.21014 0.93919 0.93108 0.97705 1.21797 1.15118 0.97826 1.00732 1.18885 0.88420 0.93685 0.87833 1.19875 1.28089 0.95547 1.06277 0.89733 1.27020 0.94860 1.04002 0.95602 1.70564 1.18592 1.36349 1.04571 0.85382 0.78426 0.77672 0.79382 1.19195 1.19941 1.17782 1.68673 1.18171 1.04380 1.31312 0.89839 0.90193 0.94577 0.89149 0.95111 0.93172 0.93681 0.91814 0.90515 0.91719 0.94816 0.93699 0.89705 0.88694 0.93156 0.91980 0.88773 0.91447 0.74788 0.85205 0.84479 0.87827 0.92205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.19 8.85 71.98 0.64 -2.56 16 2 C 0.16 4.51 2.23 44.99 0.10 4.61 16 3 H 0.06 2.17 6.90 -2.39 -0.02 2.15 16 4 C -0.08 -1.75 1.68 -10.72 -0.02 -1.77 16 5 C -0.10 -2.76 5.19 30.65 0.16 -2.60 16 6 C 0.07 1.50 5.46 86.33 0.47 1.98 16 7 N -0.57 -12.13 4.91 -922.57 -4.53 -16.67 16 8 C 0.03 0.44 9.59 127.69 1.22 1.67 16 9 C 0.06 1.04 5.46 86.33 0.47 1.51 16 10 C -0.11 -2.08 4.95 30.65 0.15 -1.93 16 11 N -0.63 -18.98 2.05 -840.65 -1.73 -20.70 16 12 C 0.08 1.46 9.30 127.77 1.19 2.65 16 13 C 0.66 28.33 8.24 179.05 1.48 29.81 16 14 O -0.51 -28.12 11.43 -3.93 -0.04 -28.17 16 15 N -0.66 -27.15 5.26 -322.12 -1.69 -28.85 16 16 C 0.37 18.43 7.43 133.26 0.99 19.42 16 17 C -0.35 -15.33 9.96 22.72 0.23 -15.11 16 18 C -0.03 -1.49 10.15 22.39 0.23 -1.26 16 19 C -0.33 -17.31 9.83 22.87 0.22 -17.09 16 20 C 0.24 14.21 6.55 40.19 0.26 14.47 16 21 C -0.47 -27.58 9.13 23.47 0.21 -27.36 16 22 H 0.08 4.68 7.85 -2.92 -0.02 4.66 16 23 C 0.01 0.62 5.49 85.29 0.47 1.09 16 24 N -0.68 -41.05 9.01 21.84 0.20 -40.86 16 25 Si 0.97 42.49 29.56 68.60 2.03 44.51 16 26 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 27 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 28 H -0.25 -10.60 7.11 99.48 0.71 -9.89 16 29 N -0.51 -30.25 5.75 -186.36 -1.07 -31.32 16 30 H 0.08 1.47 6.49 -2.39 -0.02 1.46 16 31 H 0.08 1.27 7.67 -2.39 -0.02 1.25 16 32 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.09 1.56 6.67 -2.39 -0.02 1.55 16 34 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.05 1.54 7.69 -2.39 -0.02 1.52 16 36 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.06 1.52 8.09 -2.39 -0.02 1.50 16 38 H 0.08 1.08 8.14 -2.39 -0.02 1.07 16 39 H 0.06 1.07 8.09 -2.39 -0.02 1.05 16 40 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 41 H 0.04 0.65 8.14 -2.38 -0.02 0.63 16 42 H 0.08 1.26 8.12 -2.39 -0.02 1.24 16 43 H 0.09 1.36 6.58 -2.39 -0.02 1.34 16 44 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 46 H 0.09 1.31 6.43 -2.39 -0.02 1.30 16 47 H 0.07 1.21 6.29 -2.39 -0.02 1.20 16 48 H 0.41 12.76 6.39 -92.71 -0.59 12.17 16 49 H 0.13 4.59 8.06 -2.91 -0.02 4.57 16 50 H 0.14 4.90 8.06 -2.91 -0.02 4.88 16 51 H 0.10 5.04 8.06 -2.91 -0.02 5.02 16 52 H 0.27 15.32 8.29 -92.71 -0.77 14.55 16 Total: -1.00 -79.31 399.66 1.95 -77.36 By element: Atomic # 1 Polarization: 36.86 SS G_CDS: 0.32 Total: 37.18 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: 8.48 Total: 7.51 kcal Atomic # 7 Polarization: -129.57 SS G_CDS: -8.83 Total: -138.40 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: -0.04 Total: -28.17 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.51 kcal Total: -79.31 1.95 -77.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881149103.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.590 kcal (2) G-P(sol) polarization free energy of solvation -79.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds