Wall clock time and date at job start Wed Apr 1 2020 05:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08993 * 109.47173 * 2 1 4 4 C 1.52996 * 109.46956 * 120.00252 * 2 1 3 5 5 N 1.46505 * 109.47382 * 294.99891 * 4 2 1 6 6 C 1.34767 * 120.00343 * 180.02562 * 5 4 2 7 7 O 1.21582 * 120.00067 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00381 * 179.97438 * 6 5 4 9 9 C 1.39242 * 120.00428 * 174.98938 * 8 6 5 10 10 C 1.39681 * 119.57752 * 185.53863 * 9 8 6 11 11 C 1.38650 * 119.49545 * 179.72423 * 10 9 8 12 12 C 1.38351 * 118.66777 * 0.53928 * 11 10 9 13 13 C 1.40570 * 119.13546 * 359.72658 * 12 11 10 14 14 C 1.41333 * 119.78860 * 180.02562 * 13 12 11 15 15 H 1.07998 * 120.00009 * 359.97438 * 14 13 12 16 16 C 1.40022 * 119.99901 * 179.97438 * 14 13 12 17 17 N 1.30747 * 120.00405 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00216 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47074 * 59.99734 * 18 16 14 20 20 H 1.48495 * 109.47558 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47291 * 300.00591 * 18 16 14 22 22 N 1.31910 * 119.57562 * 5.80968 * 9 8 6 23 23 C 1.53000 * 109.46935 * 240.00127 * 2 1 3 24 24 N 1.46899 * 109.47060 * 65.16962 * 23 2 1 25 25 C 1.46845 * 110.99826 * 199.96064 * 24 23 2 26 26 C 1.53039 * 109.52132 * 174.16448 * 25 24 23 27 27 C 1.53116 * 109.27915 * 59.18043 * 26 25 24 28 28 C 1.53117 * 109.16206 * 302.34217 * 27 26 25 29 29 C 1.46845 * 110.99912 * 75.75223 * 24 23 2 30 30 H 1.08995 * 109.46823 * 55.05199 * 1 2 3 31 31 H 1.08995 * 109.47263 * 175.05695 * 1 2 3 32 32 H 1.08998 * 109.46828 * 295.05865 * 1 2 3 33 33 H 1.08997 * 109.47078 * 174.99546 * 4 2 1 34 34 H 1.08995 * 109.47291 * 54.99905 * 4 2 1 35 35 H 0.97000 * 119.99351 * 359.97438 * 5 4 2 36 36 H 0.96995 * 119.99751 * 354.98225 * 8 6 5 37 37 H 1.07998 * 120.25309 * 359.97438 * 10 9 8 38 38 H 1.08000 * 120.66266 * 180.24624 * 11 10 9 39 39 H 1.08001 * 120.42993 * 179.75094 * 12 11 10 40 40 H 0.96992 * 120.00399 * 179.97438 * 17 16 14 41 41 H 1.08995 * 109.47212 * 185.17564 * 23 2 1 42 42 H 1.09000 * 109.47023 * 305.17347 * 23 2 1 43 43 H 1.09007 * 109.46352 * 294.17943 * 25 24 23 44 44 H 1.08994 * 109.46623 * 54.14773 * 25 24 23 45 45 H 1.08995 * 109.50553 * 299.23604 * 26 25 24 46 46 H 1.09008 * 109.50195 * 179.11800 * 26 25 24 47 47 H 1.09009 * 109.52053 * 182.44197 * 27 26 25 48 48 H 1.09002 * 109.52765 * 62.25276 * 27 26 25 49 49 H 1.08998 * 109.50661 * 297.72237 * 28 27 26 50 50 H 1.08997 * 109.50684 * 177.59876 * 28 27 26 51 51 H 1.09001 * 109.46036 * 305.85578 * 29 24 23 52 52 H 1.09007 * 109.46613 * 65.81859 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 0.0353 2.4424 6 6 1.9964 -0.4132 3.6659 7 8 2.6280 -1.4459 3.7795 8 7 1.6404 0.2831 4.7635 9 6 1.9037 -0.2315 6.0303 10 6 1.4287 0.4396 7.1595 11 6 1.6870 -0.0774 8.4198 12 6 2.4224 -1.2450 8.5203 13 6 2.8774 -1.8704 7.3466 14 6 3.6293 -3.0640 7.4331 15 1 3.8529 -3.4925 8.3989 16 6 4.0843 -3.6910 6.2667 17 7 3.8131 -3.1726 5.0974 18 14 5.0787 -5.2682 6.3811 19 1 4.2716 -6.3142 7.0592 20 1 5.4377 -5.7272 5.0153 21 1 6.3178 -5.0168 7.1600 22 7 2.6030 -1.3437 6.1488 23 6 2.0400 -0.7212 -1.2493 24 7 1.6549 0.0396 -2.4454 25 6 1.6915 -0.8091 -3.6432 26 6 1.1472 -0.0270 -4.8409 27 6 1.9990 1.2272 -5.0550 28 6 1.9834 2.0696 -3.7765 29 6 2.5033 1.2268 -2.6097 30 1 -0.3633 0.5887 -0.8423 31 1 -0.3633 -1.0238 -0.0885 32 1 -0.3633 0.4353 0.9309 33 1 3.1263 -0.7996 1.2055 34 1 1.6054 -1.7198 1.2951 35 1 1.1490 0.8594 2.3517 36 1 1.2008 1.1427 4.6711 37 1 0.8612 1.3521 7.0516 38 1 1.3254 0.4238 9.3055 39 1 2.6436 -1.6706 9.4880 40 1 4.1286 -3.6067 4.2895 41 1 3.1260 -0.8022 -1.2042 42 1 1.6030 -1.7186 -1.2968 43 1 2.7196 -1.1108 -3.8434 44 1 1.0785 -1.6953 -3.4793 45 1 0.1146 0.2631 -4.6472 46 1 1.1891 -0.6520 -5.7330 47 1 1.5887 1.8096 -5.8800 48 1 3.0236 0.9365 -5.2872 49 1 0.9639 2.3927 -3.5659 50 1 2.6225 2.9427 -3.9081 51 1 2.4800 1.8192 -1.6950 52 1 3.5278 0.9157 -2.8146 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881154773.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:59:22 Heat of formation + Delta-G solvation = 20.565578 kcal Electronic energy + Delta-G solvation = -30370.155003 eV Core-core repulsion = 26369.918675 eV Total energy + Delta-G solvation = -4000.236328 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -39.64076 -39.23594 -37.75880 -36.27423 -34.07249 -33.56341 -32.91308 -31.58603 -31.09924 -30.21507 -28.87303 -26.81115 -25.94892 -25.24076 -23.47767 -23.08670 -21.83112 -21.09746 -20.20516 -19.97953 -19.60735 -17.94000 -17.10175 -16.54799 -16.04295 -15.60000 -15.07344 -14.88195 -14.72661 -14.68978 -14.42768 -14.24147 -14.04559 -13.75917 -13.63383 -13.48101 -13.07481 -12.87691 -12.75199 -12.64482 -12.49463 -12.10575 -11.87034 -11.75979 -11.52717 -11.33343 -11.12285 -11.04220 -10.92410 -10.91302 -10.88083 -10.61749 -10.60139 -10.47721 -10.40257 -9.89140 -9.61853 -9.04282 -8.95900 -8.55050 -8.36662 -7.88955 -7.14308 -6.87341 -6.04608 -4.33122 2.90934 3.19201 3.20187 3.22237 3.26798 3.32856 3.67782 4.11701 4.30709 4.47315 4.48947 4.59029 4.72630 4.84173 4.92055 4.98503 5.01783 5.02201 5.11538 5.17805 5.29609 5.34934 5.42598 5.45967 5.57834 5.60822 5.62989 5.68546 5.78889 5.85618 5.88157 5.96497 6.02968 6.05505 6.11711 6.15186 6.26282 6.32821 6.53961 6.68159 6.82520 6.85874 6.86975 6.90946 7.08397 7.30142 7.44086 7.68487 7.81552 7.87602 8.23651 8.36337 8.74263 8.87174 9.12438 9.68592 10.33963 10.56099 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014394 B = 0.002243 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.845296 B =12478.360912 C =14036.083622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.095 4.095 3 H 0.073 0.927 4 C 0.150 3.850 5 N -0.758 5.758 6 C 0.663 3.337 7 O -0.464 6.464 8 N -0.674 5.674 9 C 0.387 3.613 10 C -0.359 4.359 11 C -0.036 4.036 12 C -0.308 4.308 13 C 0.271 3.729 14 C -0.426 4.426 15 H 0.081 0.919 16 C 0.056 3.944 17 N -0.648 5.648 18 Si 0.894 3.106 19 H -0.268 1.268 20 H -0.280 1.280 21 H -0.268 1.268 22 N -0.471 5.471 23 C 0.062 3.938 24 N -0.534 5.534 25 C 0.055 3.945 26 C -0.116 4.116 27 C -0.122 4.122 28 C -0.117 4.117 29 C 0.053 3.947 30 H 0.063 0.937 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.383 0.617 36 H 0.394 0.606 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.272 0.728 41 H 0.039 0.961 42 H 0.077 0.923 43 H 0.031 0.969 44 H 0.074 0.926 45 H 0.071 0.929 46 H 0.064 0.936 47 H 0.062 0.938 48 H 0.057 0.943 49 H 0.070 0.930 50 H 0.064 0.936 51 H 0.076 0.924 52 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.866 8.541 -20.199 22.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.114 4.114 3 H 0.092 0.908 4 C 0.025 3.975 5 N -0.418 5.418 6 C 0.361 3.639 7 O -0.328 6.328 8 N -0.322 5.322 9 C 0.147 3.853 10 C -0.385 4.385 11 C -0.060 4.060 12 C -0.331 4.331 13 C 0.146 3.854 14 C -0.456 4.456 15 H 0.099 0.901 16 C -0.173 4.173 17 N -0.266 5.266 18 Si 0.719 3.281 19 H -0.192 1.192 20 H -0.205 1.205 21 H -0.193 1.193 22 N -0.189 5.189 23 C -0.066 4.066 24 N -0.259 5.259 25 C -0.073 4.073 26 C -0.154 4.154 27 C -0.160 4.160 28 C -0.154 4.154 29 C -0.075 4.075 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.216 0.784 36 H 0.227 0.773 37 H 0.108 0.892 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.084 0.916 41 H 0.058 0.942 42 H 0.095 0.905 43 H 0.049 0.951 44 H 0.093 0.907 45 H 0.089 0.911 46 H 0.083 0.917 47 H 0.080 0.920 48 H 0.076 0.924 49 H 0.089 0.911 50 H 0.083 0.917 51 H 0.095 0.905 52 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -4.364 7.156 -21.069 22.675 hybrid contribution 0.467 0.409 0.599 0.863 sum -3.897 7.565 -20.470 22.168 Atomic orbital electron populations 1.21691 0.94126 1.02006 1.01364 1.21317 0.97195 0.99870 0.93021 0.90844 1.20970 0.99400 0.94887 0.82247 1.45254 1.62992 1.28730 1.04849 1.16437 0.82224 0.85263 0.79996 1.91384 1.37614 1.20563 1.83217 1.42562 1.63051 1.22668 1.03949 1.18353 0.92763 0.92100 0.82057 1.20441 1.19454 1.06112 0.92513 1.20535 0.95555 0.94802 0.95101 1.21612 1.11936 1.01062 0.98493 1.18391 0.89523 0.91910 0.85601 1.19525 1.27495 1.04947 0.93662 0.90082 1.26193 0.96841 0.98607 0.95697 1.70342 1.26685 1.32188 0.97408 0.86614 0.80754 0.82679 0.78064 1.19236 1.20483 1.19255 1.68704 1.16243 1.08981 1.24989 1.22062 0.98375 0.97045 0.89148 1.61842 1.53777 1.07712 1.02544 1.22094 0.99389 0.95717 0.90070 1.21580 1.00306 0.96561 0.96972 1.21584 0.99959 0.96758 0.97669 1.21579 1.02088 0.97586 0.94182 1.22141 0.94037 0.92262 0.99060 0.91820 0.92964 0.93163 0.92296 0.91984 0.78420 0.77331 0.89204 0.88691 0.88651 0.91644 0.94245 0.90472 0.95070 0.90712 0.91075 0.91737 0.91955 0.92419 0.91088 0.91722 0.90521 0.95037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.30 8.95 37.16 0.33 -0.97 16 2 C -0.09 -0.94 2.48 -90.62 -0.22 -1.17 16 3 H 0.07 0.71 6.69 -51.93 -0.35 0.36 16 4 C 0.15 2.05 5.06 -4.04 -0.02 2.03 16 5 N -0.76 -11.38 5.24 -65.23 -0.34 -11.72 16 6 C 0.66 13.88 8.52 -86.93 -0.74 13.14 16 7 O -0.46 -12.10 12.11 5.29 0.06 -12.03 16 8 N -0.67 -13.71 5.39 -15.79 -0.09 -13.79 16 9 C 0.39 9.71 7.43 -154.99 -1.15 8.56 16 10 C -0.36 -8.26 9.96 -38.89 -0.39 -8.65 16 11 C -0.04 -0.83 10.15 -39.39 -0.40 -1.23 16 12 C -0.31 -7.93 9.83 -38.66 -0.38 -8.31 16 13 C 0.27 7.80 6.55 -85.00 -0.56 7.24 16 14 C -0.43 -11.97 9.14 -37.74 -0.34 -12.32 16 15 H 0.08 2.13 7.85 -52.49 -0.41 1.71 16 16 C 0.06 1.51 5.50 -17.34 -0.10 1.42 16 17 N -0.65 -18.40 8.99 55.55 0.50 -17.90 16 18 Si 0.89 19.65 29.56 -169.99 -5.02 14.63 16 19 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 20 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 21 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 22 N -0.47 -13.55 5.74 -10.26 -0.06 -13.61 16 23 C 0.06 0.58 4.39 -3.82 -0.02 0.57 16 24 N -0.53 -4.61 4.14 -234.67 -0.97 -5.59 16 25 C 0.06 0.43 5.43 -3.83 -0.02 0.41 16 26 C -0.12 -0.78 6.09 -26.65 -0.16 -0.94 16 27 C -0.12 -0.79 6.00 -26.61 -0.16 -0.95 16 28 C -0.12 -0.81 6.09 -26.65 -0.16 -0.97 16 29 C 0.05 0.43 5.29 -3.83 -0.02 0.41 16 30 H 0.06 0.60 7.90 -51.93 -0.41 0.19 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.49 7.07 -51.93 -0.37 0.12 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.38 4.52 7.67 -40.82 -0.31 4.20 16 36 H 0.39 6.17 8.71 -40.82 -0.36 5.82 16 37 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 38 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 39 H 0.10 2.28 8.06 -52.49 -0.42 1.85 16 40 H 0.27 7.28 8.29 -40.82 -0.34 6.94 16 41 H 0.04 0.39 8.00 -51.93 -0.42 -0.02 16 42 H 0.08 0.73 7.79 -51.93 -0.40 0.32 16 43 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 44 H 0.07 0.57 7.93 -51.93 -0.41 0.16 16 45 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.06 0.37 8.14 -51.92 -0.42 -0.05 16 47 H 0.06 0.36 8.14 -51.92 -0.42 -0.07 16 48 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 51 H 0.08 0.63 6.64 -51.93 -0.34 0.29 16 52 H 0.03 0.27 8.14 -51.92 -0.42 -0.15 16 LS Contribution 407.63 15.07 6.14 6.14 Total: -1.00 -33.37 407.63 -13.12 -46.49 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: -8.84 Total: 9.11 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: -4.51 Total: -1.73 kcal Atomic # 7 Polarization: -61.65 SS G_CDS: -0.96 Total: -62.61 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.06 Total: -12.03 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.02 Total: 14.63 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.37 -13.12 -46.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881154773.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.052 kcal (2) G-P(sol) polarization free energy of solvation -33.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds