Wall clock time and date at job start Wed Apr 1 2020 05:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08993 * 109.47173 * 2 1 4 4 C 1.52996 * 109.46956 * 120.00252 * 2 1 3 5 5 N 1.46505 * 109.47382 * 294.99891 * 4 2 1 6 6 C 1.34767 * 120.00343 * 180.02562 * 5 4 2 7 7 O 1.21582 * 120.00067 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00381 * 179.97438 * 6 5 4 9 9 C 1.39242 * 120.00428 * 174.98938 * 8 6 5 10 10 C 1.39681 * 119.57752 * 185.53863 * 9 8 6 11 11 C 1.38650 * 119.49545 * 179.72423 * 10 9 8 12 12 C 1.38351 * 118.66777 * 0.53928 * 11 10 9 13 13 C 1.40570 * 119.13546 * 359.72658 * 12 11 10 14 14 C 1.41333 * 119.78860 * 180.02562 * 13 12 11 15 15 H 1.07998 * 120.00009 * 359.97438 * 14 13 12 16 16 C 1.40022 * 119.99901 * 179.97438 * 14 13 12 17 17 N 1.30747 * 120.00405 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00216 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47074 * 59.99734 * 18 16 14 20 20 H 1.48495 * 109.47558 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47291 * 300.00591 * 18 16 14 22 22 N 1.31910 * 119.57562 * 5.80968 * 9 8 6 23 23 C 1.53000 * 109.46935 * 240.00127 * 2 1 3 24 24 N 1.46899 * 109.47060 * 65.16962 * 23 2 1 25 25 C 1.46845 * 110.99826 * 199.96064 * 24 23 2 26 26 C 1.53039 * 109.52132 * 174.16448 * 25 24 23 27 27 C 1.53116 * 109.27915 * 59.18043 * 26 25 24 28 28 C 1.53117 * 109.16206 * 302.34217 * 27 26 25 29 29 C 1.46845 * 110.99912 * 75.75223 * 24 23 2 30 30 H 1.08995 * 109.46823 * 55.05199 * 1 2 3 31 31 H 1.08995 * 109.47263 * 175.05695 * 1 2 3 32 32 H 1.08998 * 109.46828 * 295.05865 * 1 2 3 33 33 H 1.08997 * 109.47078 * 174.99546 * 4 2 1 34 34 H 1.08995 * 109.47291 * 54.99905 * 4 2 1 35 35 H 0.97000 * 119.99351 * 359.97438 * 5 4 2 36 36 H 0.96995 * 119.99751 * 354.98225 * 8 6 5 37 37 H 1.07998 * 120.25309 * 359.97438 * 10 9 8 38 38 H 1.08000 * 120.66266 * 180.24624 * 11 10 9 39 39 H 1.08001 * 120.42993 * 179.75094 * 12 11 10 40 40 H 0.96992 * 120.00399 * 179.97438 * 17 16 14 41 41 H 1.08995 * 109.47212 * 185.17564 * 23 2 1 42 42 H 1.09000 * 109.47023 * 305.17347 * 23 2 1 43 43 H 1.09007 * 109.46352 * 294.17943 * 25 24 23 44 44 H 1.08994 * 109.46623 * 54.14773 * 25 24 23 45 45 H 1.08995 * 109.50553 * 299.23604 * 26 25 24 46 46 H 1.09008 * 109.50195 * 179.11800 * 26 25 24 47 47 H 1.09009 * 109.52053 * 182.44197 * 27 26 25 48 48 H 1.09002 * 109.52765 * 62.25276 * 27 26 25 49 49 H 1.08998 * 109.50661 * 297.72237 * 28 27 26 50 50 H 1.08997 * 109.50684 * 177.59876 * 28 27 26 51 51 H 1.09001 * 109.46036 * 305.85578 * 29 24 23 52 52 H 1.09007 * 109.46613 * 65.81859 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 0.0353 2.4424 6 6 1.9964 -0.4132 3.6659 7 8 2.6280 -1.4459 3.7795 8 7 1.6404 0.2831 4.7635 9 6 1.9037 -0.2315 6.0303 10 6 1.4287 0.4396 7.1595 11 6 1.6870 -0.0774 8.4198 12 6 2.4224 -1.2450 8.5203 13 6 2.8774 -1.8704 7.3466 14 6 3.6293 -3.0640 7.4331 15 1 3.8529 -3.4925 8.3989 16 6 4.0843 -3.6910 6.2667 17 7 3.8131 -3.1726 5.0974 18 14 5.0787 -5.2682 6.3811 19 1 4.2716 -6.3142 7.0592 20 1 5.4377 -5.7272 5.0153 21 1 6.3178 -5.0168 7.1600 22 7 2.6030 -1.3437 6.1488 23 6 2.0400 -0.7212 -1.2493 24 7 1.6549 0.0396 -2.4454 25 6 1.6915 -0.8091 -3.6432 26 6 1.1472 -0.0270 -4.8409 27 6 1.9990 1.2272 -5.0550 28 6 1.9834 2.0696 -3.7765 29 6 2.5033 1.2268 -2.6097 30 1 -0.3633 0.5887 -0.8423 31 1 -0.3633 -1.0238 -0.0885 32 1 -0.3633 0.4353 0.9309 33 1 3.1263 -0.7996 1.2055 34 1 1.6054 -1.7198 1.2951 35 1 1.1490 0.8594 2.3517 36 1 1.2008 1.1427 4.6711 37 1 0.8612 1.3521 7.0516 38 1 1.3254 0.4238 9.3055 39 1 2.6436 -1.6706 9.4880 40 1 4.1286 -3.6067 4.2895 41 1 3.1260 -0.8022 -1.2042 42 1 1.6030 -1.7186 -1.2968 43 1 2.7196 -1.1108 -3.8434 44 1 1.0785 -1.6953 -3.4793 45 1 0.1146 0.2631 -4.6472 46 1 1.1891 -0.6520 -5.7330 47 1 1.5887 1.8096 -5.8800 48 1 3.0236 0.9365 -5.2872 49 1 0.9639 2.3927 -3.5659 50 1 2.6225 2.9427 -3.9081 51 1 2.4800 1.8192 -1.6950 52 1 3.5278 0.9157 -2.8146 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881154773.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:59:21 Heat of formation + Delta-G solvation = 0.113379 kcal Electronic energy + Delta-G solvation = -30371.041876 eV Core-core repulsion = 26369.918675 eV Total energy + Delta-G solvation = -4001.123201 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.13384 -40.15033 -39.48006 -37.37226 -35.85201 -34.80730 -34.66619 -32.60251 -32.14982 -31.70922 -30.71063 -27.77174 -27.44126 -26.64315 -24.21771 -23.95250 -23.43875 -22.92831 -21.45520 -20.96276 -20.56266 -19.73150 -18.69230 -18.05002 -17.23326 -16.56893 -16.51247 -16.23980 -16.03496 -15.82920 -15.67854 -15.46542 -15.26857 -15.13350 -14.68823 -14.60441 -14.39243 -14.15201 -14.04395 -13.75451 -13.63439 -13.33756 -13.25755 -12.86541 -12.71528 -12.69390 -12.54878 -12.29403 -12.13010 -12.07560 -11.91764 -11.77383 -11.72624 -11.54725 -11.46541 -11.23632 -11.13628 -10.84006 -10.83167 -9.89341 -9.78641 -9.25920 -9.08163 -8.75454 -7.99756 -6.38877 0.99477 1.31088 1.39615 1.51421 1.54863 1.83541 2.27893 2.60204 2.89242 3.06380 3.45636 3.81049 3.88872 3.99362 4.01502 4.06827 4.10166 4.16436 4.33572 4.38306 4.45451 4.51982 4.57865 4.65278 4.70268 4.71988 4.76103 4.83442 4.87653 4.91258 4.96827 4.98999 5.00642 5.08510 5.09159 5.09795 5.15705 5.25501 5.28494 5.31228 5.34735 5.49060 5.50272 5.68999 5.74321 5.88914 5.94818 6.06431 6.12954 6.19087 6.34544 6.45094 6.84531 7.09891 7.30085 8.05445 8.41099 8.60686 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014394 B = 0.002243 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.845296 B =12478.360912 C =14036.083622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.077 4.077 3 H 0.084 0.916 4 C 0.155 3.845 5 N -0.733 5.733 6 C 0.656 3.344 7 O -0.518 6.518 8 N -0.661 5.661 9 C 0.364 3.636 10 C -0.346 4.346 11 C -0.033 4.033 12 C -0.332 4.332 13 C 0.236 3.764 14 C -0.467 4.467 15 H 0.085 0.915 16 C 0.008 3.992 17 N -0.684 5.684 18 Si 0.974 3.026 19 H -0.261 1.261 20 H -0.275 1.275 21 H -0.260 1.260 22 N -0.506 5.506 23 C 0.065 3.935 24 N -0.535 5.535 25 C 0.052 3.948 26 C -0.113 4.113 27 C -0.122 4.122 28 C -0.113 4.113 29 C 0.050 3.950 30 H 0.072 0.928 31 H 0.044 0.956 32 H 0.051 0.949 33 H 0.042 0.958 34 H 0.043 0.957 35 H 0.404 0.596 36 H 0.417 0.583 37 H 0.132 0.868 38 H 0.138 0.862 39 H 0.104 0.896 40 H 0.268 0.732 41 H 0.032 0.968 42 H 0.075 0.925 43 H 0.027 0.973 44 H 0.075 0.925 45 H 0.068 0.932 46 H 0.075 0.925 47 H 0.072 0.928 48 H 0.055 0.945 49 H 0.069 0.931 50 H 0.074 0.926 51 H 0.076 0.924 52 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.893 10.198 -20.984 24.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.097 4.097 3 H 0.102 0.898 4 C 0.029 3.971 5 N -0.394 5.394 6 C 0.354 3.646 7 O -0.386 6.386 8 N -0.312 5.312 9 C 0.124 3.876 10 C -0.372 4.372 11 C -0.057 4.057 12 C -0.355 4.355 13 C 0.110 3.890 14 C -0.498 4.498 15 H 0.103 0.897 16 C -0.217 4.217 17 N -0.303 5.303 18 Si 0.795 3.205 19 H -0.185 1.185 20 H -0.200 1.200 21 H -0.185 1.185 22 N -0.225 5.225 23 C -0.064 4.064 24 N -0.259 5.259 25 C -0.075 4.075 26 C -0.151 4.151 27 C -0.159 4.159 28 C -0.151 4.151 29 C -0.077 4.077 30 H 0.091 0.909 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.240 0.760 36 H 0.254 0.746 37 H 0.150 0.850 38 H 0.155 0.845 39 H 0.122 0.878 40 H 0.079 0.921 41 H 0.050 0.950 42 H 0.093 0.907 43 H 0.045 0.955 44 H 0.093 0.907 45 H 0.086 0.914 46 H 0.093 0.907 47 H 0.091 0.909 48 H 0.074 0.926 49 H 0.087 0.913 50 H 0.092 0.908 51 H 0.094 0.906 52 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -5.443 8.900 -21.888 24.247 hybrid contribution 0.675 0.072 0.843 1.082 sum -4.768 8.972 -21.045 23.369 Atomic orbital electron populations 1.21633 0.93385 1.01713 1.01789 1.21158 0.97493 0.99792 0.91209 0.89760 1.20998 0.98392 0.94555 0.83126 1.44956 1.61954 1.29172 1.03301 1.16737 0.81779 0.84788 0.81283 1.91377 1.40002 1.22969 1.84221 1.42387 1.62780 1.23459 1.02575 1.18869 0.92587 0.91824 0.84351 1.20925 1.17836 1.06715 0.91689 1.21020 0.94052 0.93761 0.96910 1.21801 1.13161 1.02459 0.98040 1.18896 0.90402 0.92854 0.86843 1.19857 1.29356 1.06107 0.94446 0.89659 1.27060 0.97646 1.02053 0.94961 1.70561 1.28115 1.33816 0.97831 0.85406 0.79030 0.77925 0.78155 1.18492 1.19979 1.18457 1.68662 1.17616 1.10744 1.25491 1.21984 0.97870 0.97078 0.89463 1.61865 1.53743 1.07858 1.02440 1.22158 0.99260 0.95918 0.90209 1.21564 1.00014 0.96729 0.96759 1.21590 0.99871 0.96667 0.97793 1.21565 1.02051 0.97711 0.93784 1.22196 0.93703 0.92143 0.99687 0.90949 0.93730 0.92985 0.93995 0.93846 0.76012 0.74593 0.84996 0.84459 0.87796 0.92123 0.95002 0.90687 0.95518 0.90661 0.91351 0.90654 0.90889 0.92610 0.91270 0.90787 0.90562 0.95693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.28 8.95 71.98 0.64 -1.64 16 2 C -0.08 -1.47 2.48 -10.79 -0.03 -1.49 16 3 H 0.08 1.47 6.69 -2.39 -0.02 1.46 16 4 C 0.15 4.27 5.06 86.38 0.44 4.71 16 5 N -0.73 -21.60 5.24 -478.56 -2.51 -24.11 16 6 C 0.66 27.72 8.52 179.06 1.53 29.25 16 7 O -0.52 -28.11 12.11 -3.97 -0.05 -28.16 16 8 N -0.66 -26.33 5.39 -322.13 -1.74 -28.07 16 9 C 0.36 18.12 7.43 133.26 0.99 19.11 16 10 C -0.35 -15.05 9.96 22.72 0.23 -14.83 16 11 C -0.03 -1.47 10.15 22.40 0.23 -1.25 16 12 C -0.33 -17.15 9.83 22.87 0.22 -16.92 16 13 C 0.24 13.99 6.55 40.19 0.26 14.26 16 14 C -0.47 -27.30 9.14 23.46 0.21 -27.09 16 15 H 0.09 4.66 7.85 -2.91 -0.02 4.63 16 16 C 0.01 0.47 5.50 85.29 0.47 0.94 16 17 N -0.68 -40.74 8.99 21.84 0.20 -40.55 16 18 Si 0.97 41.84 29.56 68.60 2.03 43.87 16 19 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 20 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 21 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 22 N -0.51 -29.94 5.74 -186.37 -1.07 -31.01 16 23 C 0.06 1.19 4.39 86.30 0.38 1.57 16 24 N -0.53 -8.68 4.14 -896.36 -3.71 -12.38 16 25 C 0.05 0.77 5.43 86.33 0.47 1.24 16 26 C -0.11 -1.34 6.09 30.65 0.19 -1.15 16 27 C -0.12 -1.36 6.00 30.67 0.18 -1.17 16 28 C -0.11 -1.37 6.09 30.65 0.19 -1.18 16 29 C 0.05 0.76 5.29 86.33 0.46 1.21 16 30 H 0.07 1.20 7.90 -2.39 -0.02 1.19 16 31 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.05 0.91 7.07 -2.39 -0.02 0.89 16 33 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.40 8.70 7.67 -92.71 -0.71 7.99 16 36 H 0.42 12.07 8.71 -92.71 -0.81 11.26 16 37 H 0.13 4.56 8.06 -2.91 -0.02 4.54 16 38 H 0.14 4.85 8.06 -2.91 -0.02 4.82 16 39 H 0.10 5.00 8.06 -2.91 -0.02 4.98 16 40 H 0.27 15.14 8.29 -92.71 -0.77 14.38 16 41 H 0.03 0.64 8.00 -2.39 -0.02 0.62 16 42 H 0.07 1.42 7.79 -2.39 -0.02 1.40 16 43 H 0.03 0.42 8.14 -2.38 -0.02 0.40 16 44 H 0.07 1.09 7.93 -2.39 -0.02 1.07 16 45 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.07 0.73 8.14 -2.38 -0.02 0.72 16 47 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 48 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 49 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 50 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 51 H 0.08 1.14 6.64 -2.39 -0.02 1.12 16 52 H 0.02 0.41 8.14 -2.38 -0.02 0.39 16 Total: -1.00 -76.16 407.63 -0.38 -76.55 By element: Atomic # 1 Polarization: 38.89 SS G_CDS: -0.60 Total: 38.29 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: 7.06 Total: 5.57 kcal Atomic # 7 Polarization: -127.30 SS G_CDS: -8.82 Total: -136.12 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -0.05 Total: -28.16 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Total: -76.16 -0.38 -76.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881154773.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.662 kcal (2) G-P(sol) polarization free energy of solvation -76.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds