Wall clock time and date at job start Wed Apr 1 2020 05:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46892 * 2 1 4 4 C 1.52999 * 109.46724 * 239.99964 * 2 1 3 5 5 C 1.50704 * 109.47094 * 65.00440 * 4 2 1 6 6 O 1.21283 * 119.99910 * 359.97438 * 5 4 2 7 7 N 1.34780 * 120.00106 * 179.97438 * 5 4 2 8 8 C 1.47076 * 120.88011 * 179.97438 * 7 5 4 9 9 C 1.53241 * 108.52223 * 231.20335 * 8 7 5 10 10 N 1.46893 * 109.34096 * 306.17400 * 9 8 7 11 11 C 1.46904 * 111.00087 * 187.25128 * 10 9 8 12 12 C 1.53495 * 114.20713 * 174.99979 * 11 10 9 13 13 N 1.47066 * 87.98658 * 87.51900 * 12 11 10 14 14 C 1.36937 * 136.06113 * 206.85859 * 13 12 11 15 15 H 1.07995 * 120.00001 * 0.02562 * 14 13 12 16 16 C 1.38817 * 120.00320 * 179.97438 * 14 13 12 17 17 N 1.31620 * 119.99557 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99975 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47363 * 60.00463 * 18 16 14 20 20 H 1.48506 * 109.46719 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47174 * 300.00290 * 18 16 14 22 22 C 1.47067 * 87.88528 * 27.11900 * 13 12 11 23 23 C 1.46908 * 111.26922 * 63.10259 * 10 9 8 24 24 C 1.47078 * 120.88067 * 0.02562 * 7 5 4 25 25 N 1.46494 * 109.47081 * 120.00339 * 2 1 3 26 26 C 1.36349 * 125.63967 * 59.69253 * 25 2 1 27 27 C 1.34853 * 108.21870 * 179.83055 * 26 25 2 28 28 C 1.40888 * 107.41510 * 0.42219 * 27 26 25 29 29 C 1.34842 * 107.42259 * 359.73902 * 28 27 26 30 30 H 1.09005 * 109.46847 * 299.99688 * 1 2 3 31 31 H 1.09001 * 109.47350 * 59.99967 * 1 2 3 32 32 H 1.09001 * 109.47399 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47326 * 304.99924 * 4 2 1 34 34 H 1.08997 * 109.47178 * 184.99633 * 4 2 1 35 35 H 1.09002 * 109.62765 * 111.49767 * 8 7 5 36 36 H 1.09000 * 109.63059 * 350.92067 * 8 7 5 37 37 H 1.09001 * 109.49071 * 186.21392 * 9 8 7 38 38 H 1.08997 * 109.48783 * 66.13233 * 9 8 7 39 39 H 1.08994 * 113.27892 * 41.93331 * 11 10 9 40 40 H 1.09005 * 113.46950 * 332.74466 * 12 11 10 41 41 H 1.08994 * 113.52293 * 202.30950 * 12 11 10 42 42 H 0.96999 * 119.99537 * 179.97438 * 17 16 14 43 43 H 1.09007 * 113.46858 * 87.65629 * 22 13 12 44 44 H 1.08993 * 113.47208 * 218.09965 * 22 13 12 45 45 H 1.08999 * 109.49341 * 56.85664 * 23 10 9 46 46 H 1.08999 * 109.48779 * 176.93248 * 23 10 9 47 47 H 1.08996 * 109.62929 * 248.50894 * 24 7 5 48 48 H 1.09004 * 109.62827 * 9.08656 * 24 7 5 49 49 H 1.07998 * 125.88776 * 359.96112 * 26 25 2 50 50 H 1.07995 * 126.28792 * 180.16309 * 27 26 25 51 51 H 1.08005 * 126.28709 * 179.73409 * 28 27 26 52 52 H 1.08002 * 125.89519 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6413 0.0571 -2.4766 6 8 1.0110 1.0871 -2.3633 7 7 1.9852 -0.3913 -3.7002 8 6 1.6058 0.3526 -4.9109 9 6 0.9241 -0.6157 -5.8836 10 7 1.8009 -1.7716 -6.1139 11 6 1.2621 -2.6388 -7.1701 12 6 2.1812 -3.8062 -7.5557 13 7 1.5513 -4.5889 -6.4817 14 6 1.9201 -5.6330 -5.6761 15 1 2.9044 -6.0671 -5.7715 16 6 1.0293 -6.1327 -4.7360 17 7 -0.1700 -5.6032 -4.6194 18 14 1.5328 -7.5565 -3.6366 19 1 2.7198 -7.1666 -2.8341 20 1 0.4106 -7.9000 -2.7266 21 1 1.8678 -8.7352 -4.4755 22 6 0.3486 -3.7611 -6.6580 23 6 2.0227 -2.5277 -4.8740 24 6 2.7489 -1.6381 -3.8601 25 7 2.0183 -0.6906 1.1961 26 6 1.7560 -1.9869 1.5278 27 6 2.3800 -2.2588 2.6919 28 6 3.0442 -1.0847 3.0986 29 6 2.8056 -0.1418 2.1647 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6053 -1.7198 -1.2952 34 1 3.1262 -0.7995 -1.2057 35 1 2.4972 0.7726 -5.3770 36 1 0.9152 1.1535 -4.6472 37 1 0.7354 -0.1081 -6.8295 38 1 -0.0201 -0.9546 -5.4573 39 1 0.8623 -2.0854 -8.0197 40 1 3.2378 -3.6026 -7.3819 41 1 1.9868 -4.2020 -8.5525 42 1 -0.7926 -5.9526 -3.9627 43 1 -0.3348 -4.1442 -7.4159 44 1 -0.1529 -3.5189 -5.7211 45 1 1.0631 -2.8400 -4.4619 46 1 2.6305 -3.4068 -5.0879 47 1 3.7504 -1.4098 -4.2249 48 1 2.8139 -2.1532 -2.9017 49 1 1.1541 -2.6774 0.9557 50 1 2.3689 -3.2019 3.2180 51 1 3.6357 -0.9624 3.9939 52 1 3.1741 0.8733 2.1811 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941642037.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:03 Heat of formation + Delta-G solvation = 88.966107 kcal Electronic energy + Delta-G solvation = -31990.303078 eV Core-core repulsion = 27993.032820 eV Total energy + Delta-G solvation = -3997.270258 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.23968 -41.48125 -40.52006 -37.98205 -36.02979 -35.00794 -33.86127 -32.17292 -30.82531 -30.01847 -29.61543 -29.07618 -27.38893 -26.35588 -24.88609 -24.59588 -23.68931 -22.24825 -21.36686 -20.80860 -20.35937 -19.58454 -18.84396 -18.55055 -17.56099 -17.16867 -16.88165 -16.71129 -16.58805 -16.00515 -15.66266 -15.59189 -15.42285 -15.13105 -14.90787 -14.55998 -14.44672 -14.33804 -14.01589 -14.00487 -13.66194 -13.30136 -13.15825 -13.13314 -12.96569 -12.88053 -12.80664 -12.68799 -12.51641 -12.41062 -12.29906 -12.18127 -12.11700 -12.01440 -11.89045 -11.60198 -11.20292 -10.91087 -10.76119 -9.77449 -9.53917 -9.10763 -9.05216 -8.79244 -7.87647 -5.20097 1.36693 1.46329 1.46845 1.47450 1.53074 1.74340 2.16647 2.18121 2.47697 2.95017 3.35058 3.42255 3.44647 3.52399 3.69843 3.86881 3.94842 4.06049 4.09875 4.15428 4.29057 4.33001 4.36582 4.39449 4.43755 4.52339 4.58703 4.63224 4.63858 4.69894 4.71473 4.79404 4.81442 4.87661 4.90006 4.92211 5.04127 5.10219 5.12531 5.19787 5.38058 5.39302 5.41176 5.45526 5.52228 5.56662 5.92578 6.11499 6.14246 6.27099 6.35095 6.39400 6.50522 6.92609 7.02371 7.63880 8.64246 9.28185 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009254 B = 0.003799 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3025.099287 B = 7368.298446 C = 9673.447515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.158 3.842 3 H 0.112 0.888 4 C -0.145 4.145 5 C 0.523 3.477 6 O -0.569 6.569 7 N -0.608 5.608 8 C 0.123 3.877 9 C 0.044 3.956 10 N -0.502 5.502 11 C 0.052 3.948 12 C 0.123 3.877 13 N -0.627 5.627 14 C -0.218 4.218 15 H 0.083 0.917 16 C -0.053 4.053 17 N -0.947 5.947 18 Si 0.962 3.038 19 H -0.271 1.271 20 H -0.301 1.301 21 H -0.283 1.283 22 C 0.123 3.877 23 C 0.059 3.941 24 C 0.116 3.884 25 N -0.444 5.444 26 C -0.028 4.028 27 C -0.219 4.219 28 C -0.218 4.218 29 C -0.019 4.019 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.053 0.947 33 H 0.096 0.904 34 H 0.114 0.886 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.110 0.890 38 H 0.011 0.989 39 H 0.116 0.884 40 H 0.055 0.945 41 H 0.050 0.950 42 H 0.244 0.756 43 H 0.009 0.991 44 H 0.037 0.963 45 H 0.010 0.990 46 H 0.096 0.904 47 H 0.091 0.909 48 H 0.088 0.912 49 H 0.159 0.841 50 H 0.139 0.861 51 H 0.148 0.852 52 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.368 14.076 5.415 16.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.055 3.945 3 H 0.130 0.870 4 C -0.186 4.186 5 C 0.312 3.688 6 O -0.450 6.450 7 N -0.340 5.340 8 C 0.000 4.000 9 C -0.085 4.085 10 N -0.225 5.225 11 C -0.058 4.058 12 C -0.002 4.002 13 N -0.354 5.354 14 C -0.346 4.346 15 H 0.101 0.899 16 C -0.246 4.246 17 N -0.596 5.596 18 Si 0.791 3.209 19 H -0.197 1.197 20 H -0.228 1.228 21 H -0.210 1.210 22 C -0.005 4.005 23 C -0.070 4.070 24 C -0.007 4.007 25 N -0.120 5.120 26 C -0.158 4.158 27 C -0.243 4.243 28 C -0.242 4.242 29 C -0.149 4.149 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.072 0.928 33 H 0.115 0.885 34 H 0.132 0.868 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.129 0.871 38 H 0.029 0.971 39 H 0.133 0.867 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.053 0.947 43 H 0.027 0.973 44 H 0.055 0.945 45 H 0.028 0.972 46 H 0.114 0.886 47 H 0.109 0.891 48 H 0.107 0.893 49 H 0.176 0.824 50 H 0.157 0.843 51 H 0.165 0.835 52 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 6.363 14.725 5.250 16.878 hybrid contribution -1.253 -2.034 0.721 2.495 sum 5.110 12.691 5.971 14.928 Atomic orbital electron populations 1.22194 0.93338 1.02503 1.03745 1.21012 0.95557 0.96550 0.81368 0.86998 1.21979 1.04499 1.00443 0.91634 1.20474 0.78507 0.85097 0.84771 1.90636 1.41723 1.26001 1.86608 1.48291 1.54714 1.25007 1.06019 1.21745 1.00970 0.93843 0.83395 1.22498 0.93294 0.92187 1.00507 1.62036 1.45163 1.08080 1.07230 1.23283 0.95653 0.92147 0.94699 1.22645 0.97430 0.88604 0.91527 1.46014 1.13287 1.38025 1.38054 1.19139 0.98283 1.07314 1.09873 0.89885 1.25375 0.96041 1.01866 1.01366 1.70007 1.07077 1.44518 1.37962 0.85401 0.76867 0.79905 0.78728 1.19680 1.22769 1.20975 1.22660 0.91024 0.89708 0.97126 1.22353 0.99438 0.96146 0.89075 1.22034 0.95476 0.83296 0.99895 1.44409 1.39233 1.10168 1.18209 1.21958 1.06951 0.86808 1.00062 1.21149 1.04832 1.00089 0.98278 1.21150 1.07284 0.93791 1.02008 1.22291 1.00827 1.00728 0.91039 0.91466 0.90097 0.92810 0.88548 0.86795 0.89005 0.89036 0.87145 0.97077 0.86668 0.92623 0.93236 0.94743 0.97292 0.94506 0.97202 0.88600 0.89100 0.89334 0.82402 0.84323 0.83456 0.80030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.74 8.97 71.98 0.65 -3.10 16 2 C 0.16 3.43 2.67 44.99 0.12 3.55 16 3 H 0.11 2.30 7.88 -2.39 -0.02 2.28 16 4 C -0.15 -3.30 3.53 29.85 0.11 -3.19 16 5 C 0.52 13.98 7.42 87.66 0.65 14.63 16 6 O -0.57 -17.36 13.42 -3.04 -0.04 -17.40 16 7 N -0.61 -16.11 3.01 -818.03 -2.46 -18.57 16 8 C 0.12 2.96 6.60 86.35 0.57 3.53 16 9 C 0.04 1.16 5.61 86.39 0.48 1.65 16 10 N -0.50 -15.57 4.77 -869.38 -4.15 -19.72 16 11 C 0.05 1.74 4.37 45.39 0.20 1.94 16 12 C 0.12 4.51 7.94 83.18 0.66 5.17 16 13 N -0.63 -29.38 2.17 -738.53 -1.60 -30.98 16 14 C -0.22 -11.28 9.53 84.03 0.80 -10.48 16 15 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 16 C -0.05 -2.83 5.50 84.86 0.47 -2.36 16 17 N -0.95 -54.51 11.51 21.65 0.25 -54.26 16 18 Si 0.96 43.74 29.55 68.60 2.03 45.76 16 19 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 20 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 21 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 22 C 0.12 5.47 6.48 83.18 0.54 6.01 16 23 C 0.06 2.10 4.34 86.37 0.38 2.48 16 24 C 0.12 3.17 6.50 86.33 0.56 3.73 16 25 N -0.44 -10.06 2.62 -502.00 -1.31 -11.37 16 26 C -0.03 -0.69 10.45 83.21 0.87 0.18 16 27 C -0.22 -5.31 10.86 22.14 0.24 -5.07 16 28 C -0.22 -4.80 10.86 22.14 0.24 -4.56 16 29 C -0.02 -0.40 11.39 83.21 0.95 0.54 16 30 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 31 H 0.08 2.14 5.95 -2.39 -0.01 2.13 16 32 H 0.05 1.30 7.91 -2.39 -0.02 1.28 16 33 H 0.10 2.38 7.58 -2.39 -0.02 2.36 16 34 H 0.11 2.28 8.00 -2.39 -0.02 2.26 16 35 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.09 2.24 7.06 -2.39 -0.02 2.23 16 37 H 0.11 2.32 8.02 -2.39 -0.02 2.30 16 38 H 0.01 0.35 8.14 -2.39 -0.02 0.34 16 39 H 0.12 3.12 8.01 -2.39 -0.02 3.10 16 40 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 41 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.24 13.97 8.31 -92.71 -0.77 13.20 16 43 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 44 H 0.04 1.90 5.67 -2.39 -0.01 1.89 16 45 H 0.01 0.44 6.57 -2.39 -0.02 0.42 16 46 H 0.10 4.01 5.15 -2.39 -0.01 4.00 16 47 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 48 H 0.09 2.30 6.02 -2.39 -0.01 2.29 16 49 H 0.16 3.75 8.06 -2.91 -0.02 3.73 16 50 H 0.14 3.03 8.06 -2.91 -0.02 3.00 16 51 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 52 H 0.18 2.71 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -64.58 400.59 2.09 -62.50 By element: Atomic # 1 Polarization: 28.51 SS G_CDS: 0.90 Total: 29.41 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: 8.48 Total: 14.64 kcal Atomic # 7 Polarization: -125.63 SS G_CDS: -9.28 Total: -134.90 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: -0.04 Total: -17.40 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -64.58 2.09 -62.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941642037.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.465 kcal (2) G-P(sol) polarization free energy of solvation -64.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds