Wall clock time and date at job start Wed Apr 1 2020 04:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47496 * 2 1 4 4 C 1.50706 * 109.46954 * 240.00353 * 2 1 3 5 5 O 1.21273 * 119.99941 * 276.69120 * 4 2 1 6 6 N 1.34779 * 120.00061 * 96.41972 * 4 2 1 7 7 C 1.43499 * 122.54581 * 175.10208 * 6 4 2 8 8 C 1.52202 * 113.96796 * 122.91058 * 7 6 4 9 9 C 1.51162 * 111.76877 * 82.86625 * 8 7 6 10 10 H 1.09000 * 110.22656 * 33.57006 * 9 8 7 11 11 C 1.53400 * 110.93464 * 156.63427 * 9 8 7 12 12 N 1.46618 * 108.10536 * 102.74374 * 11 9 8 13 13 C 1.36941 * 125.32147 * 178.62008 * 12 11 9 14 14 H 1.07997 * 120.00168 * 359.97438 * 13 12 11 15 15 C 1.38817 * 119.99587 * 180.02562 * 13 12 11 16 16 N 1.31615 * 120.00137 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99577 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47071 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46985 * 120.00024 * 17 15 13 20 20 H 1.48505 * 109.47019 * 240.00113 * 17 15 13 21 21 C 1.46668 * 109.35729 * 358.64055 * 12 11 9 22 22 C 1.54045 * 106.93745 * 18.30115 * 21 12 11 23 23 H 1.09000 * 111.48369 * 91.53667 * 22 21 12 24 24 C 1.51845 * 109.44919 * 214.13396 * 22 21 12 25 25 C 1.49557 * 122.54496 * 355.39308 * 6 4 2 26 26 C 1.50701 * 109.47126 * 120.00493 * 2 1 3 27 27 C 1.35310 * 126.12754 * 85.02330 * 26 2 1 28 28 C 1.39872 * 107.92196 * 179.97438 * 27 26 2 29 29 N 1.30843 * 108.19823 * 359.97438 * 28 27 26 30 30 N 1.34949 * 126.12532 * 264.71065 * 26 2 1 31 31 C 1.46503 * 126.03411 * 0.03465 * 30 26 2 32 32 H 1.08999 * 109.46720 * 60.95461 * 1 2 3 33 33 H 1.08998 * 109.47243 * 180.94979 * 1 2 3 34 34 H 1.08996 * 109.46708 * 300.95467 * 1 2 3 35 35 H 1.08995 * 108.53146 * 244.18593 * 7 6 4 36 36 H 1.08999 * 108.52662 * 1.71917 * 7 6 4 37 37 H 1.09003 * 109.13736 * 322.22610 * 8 7 6 38 38 H 1.08998 * 108.91379 * 203.35602 * 8 7 6 39 39 H 1.08996 * 109.74556 * 222.41618 * 11 9 8 40 40 H 1.09004 * 109.74622 * 343.07475 * 11 9 8 41 41 H 0.96998 * 119.99606 * 179.97438 * 16 15 13 42 42 H 1.09000 * 109.96779 * 258.93167 * 21 12 11 43 43 H 1.09002 * 109.96805 * 137.67202 * 21 12 11 44 44 H 1.08998 * 109.00875 * 54.29487 * 24 22 21 45 45 H 1.09000 * 108.94308 * 295.46756 * 24 22 21 46 46 H 1.09005 * 110.26179 * 9.14134 * 25 6 4 47 47 H 1.08999 * 110.26742 * 131.09243 * 25 6 4 48 48 H 1.08007 * 126.04125 * 359.94445 * 27 26 2 49 49 H 1.07994 * 125.90055 * 180.02562 * 28 27 26 50 50 H 1.09007 * 109.46744 * 90.00014 * 31 30 26 51 51 H 1.09004 * 109.46839 * 209.99614 * 31 30 26 52 52 H 1.08992 * 109.47598 * 329.99935 * 31 30 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 8 2.1191 -1.9200 -1.2395 6 7 2.3800 -0.0017 -2.3231 7 6 2.9602 -0.6106 -3.4857 8 6 2.1801 -0.3615 -4.7686 9 6 2.5232 0.9766 -5.3825 10 1 3.5702 1.2179 -5.1993 11 6 2.2182 0.9842 -6.8859 12 7 0.9662 1.7184 -7.0932 13 6 0.3822 1.9607 -8.3079 14 1 0.8484 1.5998 -9.2128 15 6 -0.8084 2.6711 -8.3762 16 7 -1.3763 3.1112 -7.2734 17 14 -1.6047 3.0022 -10.0333 18 1 -0.7738 2.4054 -11.1097 19 1 -2.9601 2.3961 -10.0611 20 1 -1.7133 4.4679 -10.2461 21 6 0.4372 2.1532 -5.7962 22 6 1.6021 2.0847 -4.7906 23 1 2.1342 3.0341 -4.7309 24 6 1.0691 1.6861 -3.4258 25 6 2.1962 1.4798 -2.4132 26 6 2.0324 -0.7105 1.2304 27 6 2.2089 -2.0453 1.3646 28 6 2.6881 -2.2884 2.6560 29 7 2.7959 -1.1405 3.2747 30 7 2.3923 -0.1289 2.3937 31 6 2.3632 1.3066 2.6848 32 1 -0.3633 0.4989 -0.8984 33 1 -0.3633 -1.0275 0.0170 34 1 -0.3632 0.5286 0.8813 35 1 3.9716 -0.2240 -3.6110 36 1 3.0224 -1.6860 -3.3190 37 1 1.1128 -0.3878 -4.5486 38 1 2.4143 -1.1504 -5.4834 39 1 3.0279 1.4777 -7.4234 40 1 2.1087 -0.0393 -7.2446 41 1 -2.2081 3.6079 -7.3213 42 1 -0.3668 1.4883 -5.4803 43 1 0.0678 3.1761 -5.8688 44 1 0.5042 0.7590 -3.5221 45 1 0.4047 2.4702 -3.0626 46 1 1.9103 1.8844 -1.4422 47 1 3.1132 1.9534 -2.7637 48 1 2.0138 -2.7914 0.6084 49 1 2.9284 -3.2562 3.0706 50 1 1.3913 1.5734 3.1000 51 1 3.1447 1.5470 3.4057 52 1 2.5319 1.8673 1.7655 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000946595124.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:20 Heat of formation + Delta-G solvation = 80.728923 kcal Electronic energy + Delta-G solvation = -31783.488819 eV Core-core repulsion = 27785.861370 eV Total energy + Delta-G solvation = -3997.627449 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.61038 -40.36436 -38.63576 -35.94013 -34.57728 -33.21788 -33.07850 -32.18986 -30.72985 -29.24284 -27.61769 -27.49216 -26.91293 -25.11094 -24.12240 -22.94208 -22.67604 -21.35569 -20.36899 -20.14667 -18.98778 -18.34421 -17.54693 -16.97539 -16.78023 -15.93858 -15.80945 -15.38121 -15.09977 -14.67321 -14.31941 -14.24863 -14.00454 -13.78807 -13.65999 -13.44879 -13.11522 -13.02010 -12.94589 -12.74679 -12.62816 -12.40347 -12.28201 -12.21342 -11.79017 -11.55578 -11.44098 -11.27023 -11.15825 -10.87212 -10.82193 -10.75462 -10.67462 -10.08137 -10.03423 -9.80571 -9.77197 -9.66615 -9.45752 -9.39416 -8.71970 -8.61183 -8.54596 -6.82954 -5.69831 -3.07949 1.65910 2.23272 2.50144 2.75494 2.96603 3.37504 3.43558 3.45633 4.12241 4.22114 4.34769 4.47303 4.50971 4.75694 4.87170 4.88902 4.98349 5.00153 5.09847 5.12316 5.13519 5.27504 5.34125 5.35386 5.42560 5.46755 5.56025 5.60428 5.65859 5.71822 5.73476 5.84733 5.91572 5.94109 6.07275 6.13733 6.18604 6.26482 6.38004 6.48660 6.54343 6.57238 6.61977 6.65440 6.77734 6.82649 7.01568 7.34721 7.52362 7.56186 7.63886 7.83000 8.08313 8.32667 9.22210 9.83021 10.46745 11.36289 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023720 B = 0.002362 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.165476 B =11849.588247 C =12290.133202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.044 4.044 3 H 0.100 0.900 4 C 0.533 3.467 5 O -0.529 6.529 6 N -0.604 5.604 7 C 0.111 3.889 8 C -0.125 4.125 9 C -0.092 4.092 10 H 0.065 0.935 11 C 0.142 3.858 12 N -0.603 5.603 13 C -0.223 4.223 14 H 0.077 0.923 15 C -0.011 4.011 16 N -0.922 5.922 17 Si 0.912 3.088 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.291 1.291 21 C 0.170 3.830 22 C -0.108 4.108 23 H 0.067 0.933 24 C -0.129 4.129 25 C 0.104 3.896 26 C 0.084 3.916 27 C -0.242 4.242 28 C 0.039 3.961 29 N -0.299 5.299 30 N -0.374 5.374 31 C 0.098 3.902 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.020 0.980 40 H 0.021 0.979 41 H 0.250 0.750 42 H 0.014 0.986 43 H 0.089 0.911 44 H 0.077 0.923 45 H 0.069 0.931 46 H 0.080 0.920 47 H 0.082 0.918 48 H 0.166 0.834 49 H 0.182 0.818 50 H 0.075 0.925 51 H 0.089 0.911 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.919 -3.083 18.584 20.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.067 4.067 3 H 0.118 0.882 4 C 0.320 3.680 5 O -0.406 6.406 6 N -0.337 5.337 7 C -0.012 4.012 8 C -0.163 4.163 9 C -0.111 4.111 10 H 0.084 0.916 11 C 0.016 3.984 12 N -0.328 5.328 13 C -0.351 4.351 14 H 0.095 0.905 15 C -0.207 4.207 16 N -0.571 5.571 17 Si 0.743 3.257 18 H -0.205 1.205 19 H -0.218 1.218 20 H -0.218 1.218 21 C 0.045 3.955 22 C -0.128 4.128 23 H 0.086 0.914 24 C -0.167 4.167 25 C -0.018 4.018 26 C -0.043 4.043 27 C -0.270 4.270 28 C -0.146 4.146 29 N -0.120 5.120 30 N -0.158 5.158 31 C -0.043 4.043 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.038 0.962 40 H 0.039 0.961 41 H 0.061 0.939 42 H 0.032 0.968 43 H 0.107 0.893 44 H 0.096 0.904 45 H 0.087 0.913 46 H 0.098 0.902 47 H 0.101 0.899 48 H 0.183 0.817 49 H 0.199 0.801 50 H 0.093 0.907 51 H 0.107 0.893 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.115 -2.931 19.625 21.438 hybrid contribution -0.645 -0.043 -1.664 1.785 sum 7.469 -2.974 17.961 19.679 Atomic orbital electron populations 1.21725 0.90445 1.04071 1.03230 1.19785 0.98494 0.99363 0.89070 0.88249 1.19866 0.77187 0.87333 0.83591 1.90636 1.53847 1.13685 1.82399 1.47954 1.62218 1.08721 1.14778 1.20740 0.95932 0.99558 0.85013 1.21545 1.01744 0.97612 0.95376 1.21812 0.98539 0.94578 0.96190 0.91625 1.21121 0.89792 0.95198 0.92303 1.44212 1.22617 1.62916 1.03089 1.19123 1.03211 1.28808 0.83958 0.90475 1.24783 0.97766 1.00795 0.97316 1.69892 1.19846 1.42535 1.24828 0.86029 0.79127 0.77615 0.82926 1.20536 1.21781 1.21767 1.21415 0.90228 1.01746 0.82103 1.22425 0.98698 0.97101 0.94579 0.91443 1.21905 0.97276 1.02771 0.94758 1.22537 1.00275 0.79069 0.99890 1.20360 1.01822 0.93703 0.88369 1.21776 1.11218 0.95410 0.98639 1.23908 0.99763 0.96996 0.93948 1.77333 1.22739 0.95852 1.16121 1.48437 1.51311 1.06737 1.09323 1.21843 1.03821 0.75535 1.03127 0.90637 0.90944 0.91389 0.92267 0.89920 0.90595 0.91092 0.96250 0.96117 0.93884 0.96809 0.89298 0.90442 0.91260 0.90200 0.89932 0.81658 0.80076 0.90683 0.89251 0.89711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.16 37.16 0.34 -0.87 16 2 C -0.04 -0.43 2.41 -92.92 -0.22 -0.65 16 3 H 0.10 0.73 4.74 -51.93 -0.25 0.49 16 4 C 0.53 6.66 6.71 -10.98 -0.07 6.59 16 5 O -0.53 -8.17 13.36 5.56 0.07 -8.10 16 6 N -0.60 -7.04 2.61 -174.02 -0.45 -7.50 16 7 C 0.11 1.38 5.77 -6.04 -0.03 1.35 16 8 C -0.12 -1.78 4.79 -28.06 -0.13 -1.92 16 9 C -0.09 -1.44 2.79 -89.86 -0.25 -1.69 16 10 H 0.07 0.91 7.67 -51.93 -0.40 0.51 16 11 C 0.14 2.84 6.82 -3.77 -0.03 2.82 16 12 N -0.60 -14.93 3.38 -172.12 -0.58 -15.52 16 13 C -0.22 -6.10 10.25 -15.06 -0.15 -6.26 16 14 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 15 C -0.01 -0.31 5.48 -17.43 -0.10 -0.40 16 16 N -0.92 -26.26 10.16 55.49 0.56 -25.70 16 17 Si 0.91 21.80 29.55 -169.99 -5.02 16.78 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 C 0.17 3.86 5.13 -3.41 -0.02 3.84 16 22 C -0.11 -1.78 2.94 -89.18 -0.26 -2.04 16 23 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 24 C -0.13 -1.67 4.50 -27.36 -0.12 -1.79 16 25 C 0.10 1.03 6.04 -2.39 -0.01 1.01 16 26 C 0.08 0.97 5.85 -82.27 -0.48 0.48 16 27 C -0.24 -3.04 9.56 -40.01 -0.38 -3.42 16 28 C 0.04 0.45 12.03 -17.36 -0.21 0.24 16 29 N -0.30 -3.76 12.58 30.62 0.39 -3.37 16 30 N -0.37 -4.06 4.01 -63.88 -0.26 -4.32 16 31 C 0.10 0.63 11.27 59.85 0.67 1.31 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.67 7.68 -51.93 -0.40 0.27 16 36 H 0.08 1.11 7.00 -51.93 -0.36 0.75 16 37 H 0.08 1.24 5.87 -51.93 -0.30 0.94 16 38 H 0.07 1.01 7.53 -51.93 -0.39 0.62 16 39 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.02 0.42 7.40 -51.93 -0.38 0.04 16 41 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 42 H 0.01 0.35 7.72 -51.93 -0.40 -0.05 16 43 H 0.09 2.31 6.19 -51.93 -0.32 1.99 16 44 H 0.08 1.14 5.47 -51.93 -0.28 0.86 16 45 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.08 0.58 5.66 -51.93 -0.29 0.28 16 47 H 0.08 0.77 7.82 -51.93 -0.41 0.36 16 48 H 0.17 2.24 6.14 -52.48 -0.32 1.92 16 49 H 0.18 1.51 8.06 -52.49 -0.42 1.09 16 50 H 0.07 0.39 8.14 -51.92 -0.42 -0.04 16 51 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 52 H 0.08 0.38 6.97 -51.93 -0.36 0.01 16 LS Contribution 391.64 15.07 5.90 5.90 Total: -1.00 -33.43 391.64 -9.09 -42.51 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -8.23 Total: 0.72 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -1.47 Total: -1.41 kcal Atomic # 7 Polarization: -56.06 SS G_CDS: -0.34 Total: -56.40 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: 0.07 Total: -8.10 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.43 -9.09 -42.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946595124.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.240 kcal (2) G-P(sol) polarization free energy of solvation -33.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds