Wall clock time and date at job start Wed Apr 1 2020 04:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47496 * 2 1 4 4 C 1.50706 * 109.46954 * 240.00353 * 2 1 3 5 5 O 1.21273 * 119.99941 * 276.69120 * 4 2 1 6 6 N 1.34779 * 120.00061 * 96.41972 * 4 2 1 7 7 C 1.43499 * 122.54581 * 175.10208 * 6 4 2 8 8 C 1.52202 * 113.96796 * 122.91058 * 7 6 4 9 9 C 1.51162 * 111.76877 * 82.86625 * 8 7 6 10 10 H 1.09000 * 110.22656 * 33.57006 * 9 8 7 11 11 C 1.53400 * 110.93464 * 156.63427 * 9 8 7 12 12 N 1.46618 * 108.10536 * 102.74374 * 11 9 8 13 13 C 1.36941 * 125.32147 * 178.62008 * 12 11 9 14 14 H 1.07997 * 120.00168 * 359.97438 * 13 12 11 15 15 C 1.38817 * 119.99587 * 180.02562 * 13 12 11 16 16 N 1.31615 * 120.00137 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99577 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47071 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46985 * 120.00024 * 17 15 13 20 20 H 1.48505 * 109.47019 * 240.00113 * 17 15 13 21 21 C 1.46668 * 109.35729 * 358.64055 * 12 11 9 22 22 C 1.54045 * 106.93745 * 18.30115 * 21 12 11 23 23 H 1.09000 * 111.48369 * 91.53667 * 22 21 12 24 24 C 1.51845 * 109.44919 * 214.13396 * 22 21 12 25 25 C 1.49557 * 122.54496 * 355.39308 * 6 4 2 26 26 C 1.50701 * 109.47126 * 120.00493 * 2 1 3 27 27 C 1.35310 * 126.12754 * 85.02330 * 26 2 1 28 28 C 1.39872 * 107.92196 * 179.97438 * 27 26 2 29 29 N 1.30843 * 108.19823 * 359.97438 * 28 27 26 30 30 N 1.34949 * 126.12532 * 264.71065 * 26 2 1 31 31 C 1.46503 * 126.03411 * 0.03465 * 30 26 2 32 32 H 1.08999 * 109.46720 * 60.95461 * 1 2 3 33 33 H 1.08998 * 109.47243 * 180.94979 * 1 2 3 34 34 H 1.08996 * 109.46708 * 300.95467 * 1 2 3 35 35 H 1.08995 * 108.53146 * 244.18593 * 7 6 4 36 36 H 1.08999 * 108.52662 * 1.71917 * 7 6 4 37 37 H 1.09003 * 109.13736 * 322.22610 * 8 7 6 38 38 H 1.08998 * 108.91379 * 203.35602 * 8 7 6 39 39 H 1.08996 * 109.74556 * 222.41618 * 11 9 8 40 40 H 1.09004 * 109.74622 * 343.07475 * 11 9 8 41 41 H 0.96998 * 119.99606 * 179.97438 * 16 15 13 42 42 H 1.09000 * 109.96779 * 258.93167 * 21 12 11 43 43 H 1.09002 * 109.96805 * 137.67202 * 21 12 11 44 44 H 1.08998 * 109.00875 * 54.29487 * 24 22 21 45 45 H 1.09000 * 108.94308 * 295.46756 * 24 22 21 46 46 H 1.09005 * 110.26179 * 9.14134 * 25 6 4 47 47 H 1.08999 * 110.26742 * 131.09243 * 25 6 4 48 48 H 1.08007 * 126.04125 * 359.94445 * 27 26 2 49 49 H 1.07994 * 125.90055 * 180.02562 * 28 27 26 50 50 H 1.09007 * 109.46744 * 90.00014 * 31 30 26 51 51 H 1.09004 * 109.46839 * 209.99614 * 31 30 26 52 52 H 1.08992 * 109.47598 * 329.99935 * 31 30 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 8 2.1191 -1.9200 -1.2395 6 7 2.3800 -0.0017 -2.3231 7 6 2.9602 -0.6106 -3.4857 8 6 2.1801 -0.3615 -4.7686 9 6 2.5232 0.9766 -5.3825 10 1 3.5702 1.2179 -5.1993 11 6 2.2182 0.9842 -6.8859 12 7 0.9662 1.7184 -7.0932 13 6 0.3822 1.9607 -8.3079 14 1 0.8484 1.5998 -9.2128 15 6 -0.8084 2.6711 -8.3762 16 7 -1.3763 3.1112 -7.2734 17 14 -1.6047 3.0022 -10.0333 18 1 -0.7738 2.4054 -11.1097 19 1 -2.9601 2.3961 -10.0611 20 1 -1.7133 4.4679 -10.2461 21 6 0.4372 2.1532 -5.7962 22 6 1.6021 2.0847 -4.7906 23 1 2.1342 3.0341 -4.7309 24 6 1.0691 1.6861 -3.4258 25 6 2.1962 1.4798 -2.4132 26 6 2.0324 -0.7105 1.2304 27 6 2.2089 -2.0453 1.3646 28 6 2.6881 -2.2884 2.6560 29 7 2.7959 -1.1405 3.2747 30 7 2.3923 -0.1289 2.3937 31 6 2.3632 1.3066 2.6848 32 1 -0.3633 0.4989 -0.8984 33 1 -0.3633 -1.0275 0.0170 34 1 -0.3632 0.5286 0.8813 35 1 3.9716 -0.2240 -3.6110 36 1 3.0224 -1.6860 -3.3190 37 1 1.1128 -0.3878 -4.5486 38 1 2.4143 -1.1504 -5.4834 39 1 3.0279 1.4777 -7.4234 40 1 2.1087 -0.0393 -7.2446 41 1 -2.2081 3.6079 -7.3213 42 1 -0.3668 1.4883 -5.4803 43 1 0.0678 3.1761 -5.8688 44 1 0.5042 0.7590 -3.5221 45 1 0.4047 2.4702 -3.0626 46 1 1.9103 1.8844 -1.4422 47 1 3.1132 1.9534 -2.7637 48 1 2.0138 -2.7914 0.6084 49 1 2.9284 -3.2562 3.0706 50 1 1.3913 1.5734 3.1000 51 1 3.1447 1.5470 3.4057 52 1 2.5319 1.8673 1.7655 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000946595124.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:07:18 Heat of formation + Delta-G solvation = 60.535317 kcal Electronic energy + Delta-G solvation = -31784.364479 eV Core-core repulsion = 27785.861370 eV Total energy + Delta-G solvation = -3998.503110 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.44794 -41.39535 -39.89944 -37.26303 -35.43657 -34.76250 -33.91265 -33.31208 -32.42875 -30.10060 -29.01732 -28.92943 -27.53904 -26.36875 -25.48759 -24.14291 -23.73488 -22.19436 -21.92670 -21.20479 -19.87217 -19.65052 -18.91594 -18.40246 -17.63472 -16.96518 -16.82558 -16.65363 -16.31122 -15.96421 -15.46728 -15.39864 -15.17703 -14.89196 -14.59669 -14.45490 -14.41648 -14.15640 -13.90947 -13.63403 -13.53365 -13.38525 -13.25868 -13.17558 -13.07801 -13.00422 -12.79854 -12.70457 -12.47341 -12.36291 -12.25021 -12.01409 -11.84958 -11.71297 -11.58620 -11.28961 -11.10254 -10.98088 -10.72697 -10.63069 -10.20698 -9.64594 -9.42211 -8.83757 -7.78707 -5.19176 0.83188 1.45667 1.46180 1.46616 1.56389 1.62110 1.87917 2.11278 2.49707 3.30013 3.32707 3.45239 3.68199 3.74957 3.77104 3.84575 3.86785 4.03506 4.07632 4.13527 4.27072 4.33559 4.37159 4.46653 4.52330 4.64626 4.69446 4.70532 4.71200 4.72505 4.75509 4.78452 4.87182 4.89824 4.98376 4.99787 5.09959 5.14327 5.17946 5.21260 5.24730 5.32773 5.36028 5.48179 5.59820 5.67158 5.77300 5.82298 5.89508 6.08376 6.32499 6.43987 6.72987 7.15235 7.15634 7.84712 8.45252 9.24850 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.023720 B = 0.002362 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.165476 B =11849.588247 C =12290.133202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.035 4.035 3 H 0.134 0.866 4 C 0.528 3.472 5 O -0.566 6.566 6 N -0.603 5.603 7 C 0.118 3.882 8 C -0.115 4.115 9 C -0.079 4.079 10 H 0.101 0.899 11 C 0.133 3.867 12 N -0.626 5.626 13 C -0.240 4.240 14 H 0.076 0.924 15 C -0.066 4.066 16 N -0.946 5.946 17 Si 0.975 3.025 18 H -0.269 1.269 19 H -0.294 1.294 20 H -0.289 1.289 21 C 0.177 3.823 22 C -0.094 4.094 23 H 0.081 0.919 24 C -0.121 4.121 25 C 0.110 3.890 26 C 0.086 3.914 27 C -0.270 4.270 28 C 0.034 3.966 29 N -0.325 5.325 30 N -0.372 5.372 31 C 0.084 3.916 32 H 0.079 0.921 33 H 0.051 0.949 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.049 0.951 38 H 0.068 0.932 39 H 0.023 0.977 40 H 0.015 0.985 41 H 0.246 0.754 42 H -0.022 1.022 43 H 0.052 0.948 44 H 0.056 0.944 45 H 0.078 0.922 46 H 0.117 0.883 47 H 0.103 0.897 48 H 0.148 0.852 49 H 0.203 0.797 50 H 0.090 0.910 51 H 0.095 0.905 52 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.483 -1.500 19.917 22.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.058 4.058 3 H 0.152 0.848 4 C 0.316 3.684 5 O -0.444 6.444 6 N -0.335 5.335 7 C -0.006 4.006 8 C -0.153 4.153 9 C -0.097 4.097 10 H 0.119 0.881 11 C 0.008 3.992 12 N -0.352 5.352 13 C -0.369 4.369 14 H 0.094 0.906 15 C -0.258 4.258 16 N -0.596 5.596 17 Si 0.804 3.196 18 H -0.194 1.194 19 H -0.221 1.221 20 H -0.216 1.216 21 C 0.052 3.948 22 C -0.114 4.114 23 H 0.100 0.900 24 C -0.160 4.160 25 C -0.010 4.010 26 C -0.042 4.042 27 C -0.299 4.299 28 C -0.150 4.150 29 N -0.147 5.147 30 N -0.155 5.155 31 C -0.056 4.056 32 H 0.098 0.902 33 H 0.070 0.930 34 H 0.107 0.893 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.068 0.932 38 H 0.087 0.913 39 H 0.041 0.959 40 H 0.033 0.967 41 H 0.055 0.945 42 H -0.004 1.004 43 H 0.070 0.930 44 H 0.074 0.926 45 H 0.097 0.903 46 H 0.135 0.865 47 H 0.121 0.879 48 H 0.166 0.834 49 H 0.219 0.781 50 H 0.109 0.891 51 H 0.113 0.887 52 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 9.709 -1.333 20.971 23.147 hybrid contribution -1.162 -0.556 -2.153 2.509 sum 8.546 -1.889 18.817 20.754 Atomic orbital electron populations 1.21720 0.89836 1.03193 1.04449 1.19818 0.98747 1.00379 0.86822 0.84809 1.20391 0.76512 0.87064 0.84451 1.90636 1.55187 1.15486 1.83124 1.48024 1.61660 1.09591 1.14224 1.20601 0.96578 0.99177 0.84244 1.21425 1.00442 0.96898 0.96528 1.21764 1.00211 0.94899 0.92858 0.88100 1.21360 0.87952 0.94149 0.95710 1.44564 1.24076 1.63540 1.03020 1.19462 1.03639 1.28538 0.85285 0.90568 1.25585 0.98513 1.01143 1.00602 1.70137 1.19834 1.43097 1.26484 0.85051 0.77848 0.77238 0.79455 1.19356 1.22129 1.21583 1.21194 0.92012 0.98380 0.83188 1.22283 0.96180 0.98231 0.94658 0.90040 1.21800 0.98504 1.01958 0.93708 1.22664 0.99749 0.77866 1.00744 1.20530 1.01068 0.93537 0.89060 1.21780 1.13077 0.96112 0.98932 1.24259 0.99309 0.97860 0.93618 1.77277 1.23802 0.96501 1.17149 1.48759 1.50176 1.07959 1.08644 1.22276 1.05069 0.73259 1.04954 0.90195 0.93023 0.89267 0.89877 0.91260 0.93208 0.91346 0.95875 0.96683 0.94454 1.00394 0.92996 0.92575 0.90323 0.86468 0.87909 0.83427 0.78078 0.89115 0.88651 0.86977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.08 9.16 71.98 0.66 -1.42 16 2 C -0.03 -0.58 2.41 -12.28 -0.03 -0.61 16 3 H 0.13 1.24 4.74 -2.39 -0.01 1.23 16 4 C 0.53 12.21 6.71 87.66 0.59 12.80 16 5 O -0.57 -17.43 13.36 -3.01 -0.04 -17.47 16 6 N -0.60 -12.35 2.61 -822.87 -2.15 -14.50 16 7 C 0.12 2.67 5.77 86.67 0.50 3.17 16 8 C -0.11 -3.16 4.79 29.73 0.14 -3.01 16 9 C -0.08 -2.30 2.79 -10.30 -0.03 -2.33 16 10 H 0.10 2.33 7.67 -2.39 -0.02 2.32 16 11 C 0.13 5.30 6.82 86.49 0.59 5.89 16 12 N -0.63 -31.71 3.38 -698.45 -2.36 -34.07 16 13 C -0.24 -13.46 10.25 84.03 0.86 -12.60 16 14 H 0.08 4.15 7.83 -2.91 -0.02 4.12 16 15 C -0.07 -3.71 5.48 84.86 0.47 -3.24 16 16 N -0.95 -55.62 10.16 21.65 0.22 -55.40 16 17 Si 0.98 45.56 29.55 68.60 2.03 47.59 16 18 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 19 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 20 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 21 C 0.18 8.26 5.13 86.70 0.44 8.71 16 22 C -0.09 -2.93 2.94 -9.86 -0.03 -2.96 16 23 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 24 C -0.12 -2.87 4.50 30.18 0.14 -2.73 16 25 C 0.11 1.67 6.04 85.75 0.52 2.19 16 26 C 0.09 1.82 5.85 41.40 0.24 2.06 16 27 C -0.27 -6.76 9.56 21.99 0.21 -6.55 16 28 C 0.03 0.77 12.03 85.24 1.03 1.79 16 29 N -0.32 -7.76 12.58 -57.02 -0.72 -8.48 16 30 N -0.37 -7.17 4.01 -356.02 -1.43 -8.59 16 31 C 0.08 0.77 11.27 127.77 1.44 2.21 16 32 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.08 1.54 7.68 -2.39 -0.02 1.52 16 36 H 0.07 1.80 7.00 -2.39 -0.02 1.78 16 37 H 0.05 1.65 5.87 -2.39 -0.01 1.63 16 38 H 0.07 1.91 7.53 -2.39 -0.02 1.89 16 39 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.02 0.62 7.40 -2.38 -0.02 0.60 16 41 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 42 H -0.02 -1.15 7.72 -2.39 -0.02 -1.17 16 43 H 0.05 2.79 6.19 -2.39 -0.01 2.78 16 44 H 0.06 1.61 5.47 -2.39 -0.01 1.60 16 45 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.12 0.96 5.66 -2.38 -0.01 0.95 16 47 H 0.10 1.28 7.82 -2.39 -0.02 1.26 16 48 H 0.15 4.19 6.14 -2.91 -0.02 4.18 16 49 H 0.20 3.30 8.06 -2.91 -0.02 3.28 16 50 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 51 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 52 H 0.11 0.40 6.97 -2.39 -0.02 0.38 16 Total: -1.00 -77.70 391.64 4.21 -73.49 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: 0.92 Total: 14.07 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: 7.73 Total: 3.37 kcal Atomic # 7 Polarization: -114.61 SS G_CDS: -6.43 Total: -121.04 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -0.04 Total: -17.47 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -77.70 4.21 -73.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946595124.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.023 kcal (2) G-P(sol) polarization free energy of solvation -77.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds