Wall clock time and date at job start Wed Apr 1 2020 04:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47062 * 2 1 4 4 C 1.53003 * 109.46910 * 240.00077 * 2 1 3 5 5 C 1.50700 * 109.46965 * 64.99975 * 4 2 1 6 6 C 1.34673 * 126.59093 * 85.03280 * 5 4 2 7 7 N 1.34122 * 108.02013 * 179.97438 * 6 5 4 8 8 C 1.30498 * 109.25700 * 359.97438 * 7 6 5 9 9 N 1.35039 * 108.70077 * 359.77351 * 8 7 6 10 10 H 0.97000 * 126.39994 * 180.26709 * 9 8 7 11 11 C 1.50694 * 109.47198 * 119.99913 * 2 1 3 12 12 O 1.21287 * 119.99764 * 112.27040 * 11 2 1 13 13 N 1.34776 * 120.00439 * 292.27389 * 11 2 1 14 14 C 1.49725 * 122.75258 * 5.36302 * 13 11 2 15 15 C 1.53168 * 105.59976 * 111.58843 * 14 13 11 16 16 C 1.50960 * 111.95650 * 99.83213 * 15 14 13 17 17 H 1.08998 * 109.52103 * 58.24672 * 16 15 14 18 18 C 1.53592 * 111.30392 * 178.50909 * 16 15 14 19 19 N 1.47175 * 105.65203 * 150.29146 * 18 16 15 20 20 C 1.36936 * 126.09915 * 149.75886 * 19 18 16 21 21 H 1.07995 * 120.00301 * 344.75004 * 20 19 18 22 22 C 1.38812 * 119.99822 * 164.74787 * 20 19 18 23 23 N 1.31622 * 119.99851 * 352.31741 * 22 20 19 24 24 Si 1.86794 * 119.99926 * 172.31208 * 22 20 19 25 25 H 1.48505 * 109.47155 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46950 * 120.00056 * 24 22 20 27 27 H 1.48501 * 109.47157 * 240.00162 * 24 22 20 28 28 C 1.46776 * 107.79686 * 329.73581 * 19 18 16 29 29 C 1.53832 * 107.91261 * 20.29594 * 28 19 18 30 30 H 1.09010 * 111.54879 * 118.11354 * 29 28 19 31 31 C 1.51849 * 109.23609 * 241.12790 * 29 28 19 32 32 C 1.43634 * 122.75908 * 185.06764 * 13 11 2 33 33 H 1.08998 * 109.47482 * 188.27027 * 1 2 3 34 34 H 1.09001 * 109.47035 * 308.27185 * 1 2 3 35 35 H 1.09002 * 109.47419 * 68.26629 * 1 2 3 36 36 H 1.09000 * 109.47153 * 184.99998 * 4 2 1 37 37 H 1.08999 * 109.47058 * 305.00255 * 4 2 1 38 38 H 1.08002 * 125.98640 * 359.95395 * 6 5 4 39 39 H 1.08000 * 125.65041 * 180.02562 * 8 7 6 40 40 H 1.09005 * 110.21384 * 230.60890 * 14 13 11 41 41 H 1.09007 * 110.21467 * 352.43238 * 14 13 11 42 42 H 1.09001 * 108.98354 * 220.47080 * 15 14 13 43 43 H 1.09000 * 108.98292 * 339.27997 * 15 14 13 44 44 H 1.09002 * 110.20619 * 269.33418 * 18 16 15 45 45 H 1.08993 * 110.21436 * 31.24105 * 18 16 15 46 46 H 0.97007 * 119.99599 * 179.97438 * 23 22 20 47 47 H 1.08999 * 109.77801 * 260.68041 * 28 19 18 48 48 H 1.09010 * 109.77369 * 139.90833 * 28 19 18 49 49 H 1.09003 * 108.91601 * 320.65700 * 31 29 28 50 50 H 1.09002 * 108.91601 * 79.29116 * 31 29 28 51 51 H 1.09000 * 108.42499 * 359.36032 * 32 13 11 52 52 H 1.09008 * 108.42476 * 116.62078 * 32 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6412 0.0571 -2.4766 6 6 2.3074 1.0926 -3.0221 7 7 1.6243 1.5036 -4.1006 8 6 0.5603 0.7619 -4.2445 9 7 0.5357 -0.1567 -3.2550 10 1 -0.1401 -0.8393 -3.1198 11 6 2.0323 -0.7104 1.2304 12 8 2.6098 -1.7717 1.1246 13 7 1.8399 -0.1664 2.4484 14 6 1.0356 1.0783 2.6618 15 6 -0.2219 0.6323 3.4141 16 6 -0.1196 0.9040 4.8955 17 1 0.0461 1.9687 5.0599 18 6 -1.4021 0.4852 5.6295 19 7 -0.9767 0.1034 6.9857 20 6 -1.7236 0.2182 8.1278 21 1 -2.6103 0.8346 8.1335 22 6 -1.3409 -0.4579 9.2781 23 7 -0.3519 -1.3253 9.2334 24 14 -2.2293 -0.1365 10.8896 25 1 -3.2953 0.8747 10.6740 26 1 -2.8375 -1.3994 11.3799 27 1 -1.2617 0.3703 11.8957 28 6 0.3905 -0.4227 6.8957 29 6 1.0097 0.0909 5.5845 30 1 1.8828 0.7160 5.7719 31 6 1.3685 -1.0926 4.7034 32 6 2.3844 -0.7366 3.6491 33 1 -0.3634 -1.0169 0.1478 34 1 -0.3633 0.6365 0.8068 35 1 -0.3634 0.3805 -0.9546 36 1 3.1263 -0.7995 -1.2057 37 1 1.6053 -1.7198 -1.2952 38 1 3.2300 1.5177 -2.6551 39 1 -0.1763 0.8630 -5.0279 40 1 1.5996 1.7930 3.2614 41 1 0.7662 1.5216 1.7031 42 1 -1.0830 1.1676 3.0140 43 1 -0.3666 -0.4370 3.2601 44 1 -2.0999 1.3213 5.6750 45 1 -1.8636 -0.3644 5.1264 46 1 -0.0843 -1.7975 10.0375 47 1 0.3668 -1.5124 6.8904 48 1 0.9778 -0.0705 7.7438 49 1 1.7719 -1.8892 5.3286 50 1 0.4654 -1.4534 4.2112 51 1 2.9332 -1.6401 3.3833 52 1 3.0886 -0.0248 4.0799 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000946815695.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:20 Heat of formation + Delta-G solvation = 26.399341 kcal Electronic energy + Delta-G solvation = -31309.693251 eV Core-core repulsion = 27309.709894 eV Total energy + Delta-G solvation = -3999.983357 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.95485 -41.64276 -40.02348 -37.29864 -36.15290 -34.81995 -33.60434 -33.17840 -32.51384 -30.98582 -29.12030 -28.83430 -27.32809 -26.28454 -24.88733 -24.03894 -23.05309 -22.40196 -22.12844 -21.50456 -20.06321 -19.67224 -18.95535 -18.76842 -17.95942 -17.18844 -16.87959 -16.60291 -16.22461 -15.93791 -15.77541 -15.39291 -15.15099 -14.96862 -14.64908 -14.55108 -14.39966 -14.31309 -14.02722 -13.66387 -13.64466 -13.49065 -13.23915 -13.13143 -13.08046 -12.94003 -12.77317 -12.42235 -12.31699 -12.13141 -12.06073 -12.02633 -11.79537 -11.74681 -11.28752 -11.24666 -10.96553 -10.89191 -10.88904 -10.70100 -10.68549 -9.63753 -9.26035 -8.84261 -7.90115 -5.26941 1.14318 1.44226 1.44760 1.55661 1.61439 2.00376 2.27500 2.36065 2.47961 3.29115 3.37015 3.67257 3.74234 3.84564 3.88637 3.93833 3.94589 3.99737 4.06151 4.19511 4.23608 4.26388 4.35740 4.46128 4.57126 4.63654 4.66722 4.68780 4.71639 4.74489 4.80104 4.82915 4.88615 4.91105 5.00034 5.01254 5.07393 5.13176 5.16939 5.26017 5.29721 5.31418 5.41186 5.46400 5.57680 5.61295 5.75347 5.79075 5.83985 6.21425 6.48499 6.61377 7.08282 7.17531 7.19959 7.76974 8.45908 9.22372 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.027731 B = 0.002095 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.449483 B =13362.854756 C =13917.591139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 H 0.119 0.881 4 C -0.018 4.018 5 C -0.012 4.012 6 C -0.046 4.046 7 N -0.538 5.538 8 C 0.189 3.811 9 N -0.557 5.557 10 H 0.433 0.567 11 C 0.523 3.477 12 O -0.586 6.586 13 N -0.604 5.604 14 C 0.107 3.893 15 C -0.122 4.122 16 C -0.081 4.081 17 H 0.078 0.922 18 C 0.132 3.868 19 N -0.623 5.623 20 C -0.242 4.242 21 H 0.080 0.920 22 C -0.066 4.066 23 N -0.948 5.948 24 Si 0.977 3.023 25 H -0.263 1.263 26 H -0.294 1.294 27 H -0.291 1.291 28 C 0.187 3.813 29 C -0.091 4.091 30 H 0.084 0.916 31 C -0.112 4.112 32 C 0.118 3.882 33 H 0.053 0.947 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.171 0.829 39 H 0.240 0.760 40 H 0.093 0.907 41 H 0.120 0.880 42 H 0.093 0.907 43 H 0.061 0.939 44 H 0.047 0.953 45 H 0.008 0.992 46 H 0.247 0.753 47 H -0.004 1.004 48 H 0.009 0.991 49 H 0.054 0.946 50 H 0.059 0.941 51 H 0.066 0.934 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.915 6.127 -25.890 26.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.114 4.114 3 H 0.136 0.864 4 C -0.057 4.057 5 C -0.128 4.128 6 C -0.193 4.193 7 N -0.258 5.258 8 C -0.095 4.095 9 N -0.161 5.161 10 H 0.273 0.727 11 C 0.313 3.687 12 O -0.466 6.466 13 N -0.335 5.335 14 C -0.013 4.013 15 C -0.160 4.160 16 C -0.101 4.101 17 H 0.097 0.903 18 C 0.007 3.993 19 N -0.348 5.348 20 C -0.371 4.371 21 H 0.098 0.902 22 C -0.260 4.260 23 N -0.597 5.597 24 Si 0.805 3.195 25 H -0.187 1.187 26 H -0.221 1.221 27 H -0.218 1.218 28 C 0.062 3.938 29 C -0.110 4.110 30 H 0.102 0.898 31 C -0.151 4.151 32 C -0.006 4.006 33 H 0.072 0.928 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.092 0.908 38 H 0.188 0.812 39 H 0.256 0.744 40 H 0.111 0.889 41 H 0.138 0.862 42 H 0.111 0.889 43 H 0.080 0.920 44 H 0.066 0.934 45 H 0.026 0.974 46 H 0.056 0.944 47 H 0.014 0.986 48 H 0.028 0.972 49 H 0.073 0.927 50 H 0.078 0.922 51 H 0.084 0.916 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.466 6.167 -26.283 27.109 hybrid contribution -0.822 -1.524 2.278 2.861 sum 1.644 4.642 -24.005 24.505 Atomic orbital electron populations 1.21986 0.91598 1.02920 1.04016 1.21245 0.98545 1.01327 0.90261 0.86352 1.19717 1.02001 0.96975 0.87032 1.21069 0.91659 1.02050 0.98014 1.22320 1.02622 0.98571 0.95763 1.70271 1.07159 1.28747 1.19611 1.25633 0.99404 0.89099 0.95398 1.43346 1.21286 1.28821 1.22691 0.72696 1.21016 0.78178 0.84618 0.84852 1.90688 1.45045 1.24082 1.86782 1.48107 1.52666 1.27315 1.05454 1.22767 0.90897 0.85324 1.02359 1.21684 0.99044 1.02306 0.92960 1.21695 0.93861 0.99883 0.94641 0.90328 1.21514 0.96088 0.96583 0.85098 1.44677 1.12762 1.74391 1.02931 1.19444 1.07031 1.22199 0.88471 0.90223 1.25778 1.00246 0.97874 1.02100 1.70182 1.32154 1.29508 1.27819 0.85035 0.77850 0.77261 0.79339 1.18677 1.22072 1.21841 1.20830 0.84903 0.94537 0.93543 1.22078 0.98029 0.96464 0.94476 0.89810 1.21276 0.99531 0.97750 0.96499 1.20207 0.95468 0.99741 0.85225 0.92812 0.90030 0.90620 0.89585 0.90761 0.81189 0.74368 0.88886 0.86210 0.88859 0.92002 0.93426 0.97425 0.94412 0.98579 0.97216 0.92684 0.92233 0.91594 0.90837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 8.75 71.98 0.63 -0.98 16 2 C -0.09 -1.26 1.90 -11.54 -0.02 -1.28 16 3 H 0.12 1.25 7.66 -2.39 -0.02 1.23 16 4 C -0.02 -0.26 4.55 29.85 0.14 -0.12 16 5 C -0.01 -0.15 5.55 40.95 0.23 0.07 16 6 C -0.05 -0.78 11.79 83.53 0.98 0.21 16 7 N -0.54 -10.12 11.25 -200.31 -2.25 -12.37 16 8 C 0.19 2.10 13.04 180.26 2.35 4.45 16 9 N -0.56 -5.07 5.56 -186.49 -1.04 -6.11 16 10 H 0.43 1.51 8.96 -92.71 -0.83 0.68 16 11 C 0.52 11.35 7.05 87.66 0.62 11.97 16 12 O -0.59 -17.61 15.53 -3.05 -0.05 -17.65 16 13 N -0.60 -12.46 2.67 -824.48 -2.21 -14.67 16 14 C 0.11 1.61 5.46 85.81 0.47 2.08 16 15 C -0.12 -2.44 3.92 29.99 0.12 -2.32 16 16 C -0.08 -2.34 2.61 -10.48 -0.03 -2.37 16 17 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 18 C 0.13 5.14 6.71 86.45 0.58 5.72 16 19 N -0.62 -31.79 3.37 -696.82 -2.35 -34.14 16 20 C -0.24 -13.59 10.24 84.03 0.86 -12.73 16 21 H 0.08 4.27 7.84 -2.91 -0.02 4.24 16 22 C -0.07 -3.82 5.41 84.86 0.46 -3.36 16 23 N -0.95 -57.98 10.85 21.65 0.23 -57.74 16 24 Si 0.98 45.87 29.56 68.60 2.03 47.90 16 25 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 26 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 27 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 28 C 0.19 9.13 4.96 86.61 0.43 9.56 16 29 C -0.09 -3.08 3.14 -10.11 -0.03 -3.11 16 30 H 0.08 2.59 7.76 -2.38 -0.02 2.57 16 31 C -0.11 -3.44 4.51 29.46 0.13 -3.31 16 32 C 0.12 2.97 5.67 86.15 0.49 3.46 16 33 H 0.05 0.70 8.12 -2.39 -0.02 0.68 16 34 H 0.08 0.78 4.95 -2.39 -0.01 0.77 16 35 H 0.07 0.66 6.67 -2.39 -0.02 0.64 16 36 H 0.09 1.40 8.07 -2.39 -0.02 1.38 16 37 H 0.07 1.14 8.13 -2.39 -0.02 1.12 16 38 H 0.17 2.54 8.06 -2.91 -0.02 2.52 16 39 H 0.24 0.65 8.06 -2.91 -0.02 0.63 16 40 H 0.09 1.30 7.85 -2.38 -0.02 1.28 16 41 H 0.12 1.09 4.81 -2.38 -0.01 1.08 16 42 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.06 1.50 5.57 -2.39 -0.01 1.48 16 44 H 0.05 1.75 8.14 -2.39 -0.02 1.74 16 45 H 0.01 0.32 7.96 -2.39 -0.02 0.30 16 46 H 0.25 14.64 8.31 -92.70 -0.77 13.87 16 47 H 0.00 -0.21 7.00 -2.39 -0.02 -0.23 16 48 H 0.01 0.52 7.44 -2.38 -0.02 0.50 16 49 H 0.05 1.89 7.66 -2.39 -0.02 1.87 16 50 H 0.06 1.94 5.78 -2.39 -0.01 1.93 16 51 H 0.07 1.88 7.01 -2.39 -0.02 1.86 16 52 H 0.07 1.67 7.70 -2.38 -0.02 1.65 16 Total: -1.00 -79.28 391.17 2.88 -76.40 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: 0.10 Total: 10.46 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: 8.40 Total: 7.92 kcal Atomic # 7 Polarization: -117.42 SS G_CDS: -7.61 Total: -125.03 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -0.05 Total: -17.65 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -79.28 2.88 -76.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946815695.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.803 kcal (2) G-P(sol) polarization free energy of solvation -79.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds