Wall clock time and date at job start Wed Apr 1 2020 05:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47405 * 2 1 4 4 C 1.53001 * 109.47204 * 120.00486 * 2 1 3 5 5 C 1.50702 * 109.46599 * 294.99819 * 4 2 1 6 6 O 1.21279 * 120.00408 * 0.02562 * 5 4 2 7 7 N 1.34788 * 119.99981 * 179.97438 * 5 4 2 8 8 C 1.43499 * 122.54657 * 179.97438 * 7 5 4 9 9 C 1.51734 * 114.25010 * 122.93572 * 8 7 5 10 10 C 1.51150 * 111.88163 * 82.62535 * 9 8 7 11 11 H 1.09004 * 110.70161 * 33.97295 * 10 9 8 12 12 C 1.53399 * 110.93947 * 156.72329 * 10 9 8 13 13 N 1.46606 * 108.09192 * 102.74776 * 12 10 9 14 14 C 1.36933 * 125.31785 * 178.69239 * 13 12 10 15 15 H 1.08000 * 119.99948 * 359.97438 * 14 13 12 16 16 C 1.38809 * 120.00358 * 179.97438 * 14 13 12 17 17 N 1.31621 * 119.99970 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00175 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47349 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47193 * 119.99878 * 18 16 14 21 21 H 1.48501 * 109.46679 * 239.99399 * 18 16 14 22 22 C 1.46659 * 109.36595 * 358.64813 * 13 12 10 23 23 C 1.54052 * 106.93554 * 18.29422 * 22 13 12 24 24 H 1.09009 * 110.61025 * 91.12190 * 23 22 13 25 25 C 1.51841 * 109.46371 * 214.13266 * 23 22 13 26 26 C 1.49549 * 122.54439 * 359.97438 * 7 5 4 27 27 N 1.46498 * 109.46870 * 239.99906 * 2 1 3 28 28 C 1.34945 * 126.04534 * 324.71579 * 27 2 1 29 29 C 1.35313 * 107.74958 * 179.83832 * 28 27 2 30 30 C 1.39864 * 107.91917 * 0.42452 * 29 28 27 31 31 N 1.30837 * 108.20615 * 359.73684 * 30 29 28 32 32 H 1.08997 * 109.47519 * 60.00241 * 1 2 3 33 33 H 1.09001 * 109.46915 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.47125 * 299.99376 * 1 2 3 35 35 H 1.08999 * 109.47444 * 175.00304 * 4 2 1 36 36 H 1.09002 * 109.47281 * 54.99250 * 4 2 1 37 37 H 1.08993 * 108.52910 * 1.69743 * 8 7 5 38 38 H 1.09001 * 108.52701 * 244.16448 * 8 7 5 39 39 H 1.08994 * 108.99640 * 322.00678 * 9 8 7 40 40 H 1.09000 * 108.93416 * 203.20246 * 9 8 7 41 41 H 1.09002 * 109.74633 * 343.08166 * 12 10 9 42 42 H 1.09000 * 109.74707 * 222.40825 * 12 10 9 43 43 H 0.96999 * 120.00549 * 179.97438 * 17 16 14 44 44 H 1.09001 * 109.96898 * 137.66646 * 22 13 12 45 45 H 1.09000 * 109.97200 * 258.92834 * 22 13 12 46 46 H 1.09004 * 109.00957 * 295.50439 * 25 23 22 47 47 H 1.08992 * 109.01033 * 54.29467 * 25 23 22 48 48 H 1.09006 * 110.26635 * 9.16553 * 26 7 5 49 49 H 1.08992 * 110.26451 * 131.11923 * 26 7 5 50 50 H 1.08007 * 126.12136 * 0.02562 * 28 27 2 51 51 H 1.08001 * 126.03992 * 180.15962 * 29 28 27 52 52 H 1.08004 * 125.89984 * 179.71568 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6413 0.0570 2.4765 6 8 1.0110 1.0868 2.3633 7 7 1.9844 -0.3920 3.7002 8 6 1.6341 0.3051 4.9046 9 6 0.8337 -0.5222 5.8932 10 6 1.7230 -1.4022 6.7413 11 1 2.6752 -0.9104 6.9400 12 6 1.0312 -1.7725 8.0595 13 7 0.5416 -3.1497 7.9455 14 6 -0.1087 -3.8428 8.9313 15 1 -0.2967 -3.3749 9.8864 16 6 -0.5263 -5.1468 8.7032 17 7 -0.2977 -5.7169 7.5391 18 14 -1.4127 -6.0925 10.0483 19 1 -1.5444 -5.2339 11.2527 20 1 -2.7626 -6.4853 9.5700 21 1 -0.6355 -7.3103 10.3916 22 6 0.8562 -3.6688 6.6104 23 6 1.9590 -2.7656 6.0262 24 1 2.9461 -3.1599 6.2683 25 6 1.7678 -2.6401 4.5251 26 6 2.7592 -1.6546 3.9059 27 7 2.0183 -0.6906 -1.1962 28 6 1.4432 -1.7592 -1.7864 29 6 2.1963 -2.0924 -2.8601 30 6 3.2738 -1.2028 -2.9227 31 7 3.1682 -0.3620 -1.9258 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3633 0.5137 0.8901 35 1 3.1263 -0.7995 1.2056 36 1 1.6053 -1.7199 1.2951 37 1 1.0505 1.1860 4.6376 38 1 2.5510 0.6361 5.3924 39 1 0.1324 -1.1505 5.3441 40 1 0.2737 0.1490 6.5443 41 1 0.1941 -1.0976 8.2382 42 1 1.7433 -1.7017 8.8816 43 1 -0.5891 -6.6282 7.3798 44 1 1.2161 -4.6949 6.6853 45 1 -0.0304 -3.6302 5.9776 46 1 1.9072 -3.6190 4.0663 47 1 0.7531 -2.2966 4.3240 48 1 3.1229 -2.0342 2.9510 49 1 3.5940 -1.4790 4.5843 50 1 0.5414 -2.2572 -1.4619 51 1 2.0023 -2.9046 -3.5450 52 1 4.0578 -1.2090 -3.6655 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000946848708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:57 Heat of formation + Delta-G solvation = 75.715535 kcal Electronic energy + Delta-G solvation = -31304.641828 eV Core-core repulsion = 27306.796982 eV Total energy + Delta-G solvation = -3997.844846 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.46755 -40.53265 -38.80259 -36.19047 -35.44164 -33.20207 -32.38933 -30.99402 -30.45725 -29.98503 -28.57400 -27.60970 -27.03310 -24.43399 -23.78562 -22.90506 -22.43488 -21.26719 -20.26200 -20.15830 -19.29786 -18.35739 -17.93994 -17.00598 -16.70235 -16.28036 -15.92501 -15.18392 -15.03657 -14.95150 -14.49526 -14.27215 -14.02559 -13.85726 -13.63720 -13.33765 -13.21355 -13.03526 -13.02917 -12.92214 -12.68498 -12.26392 -12.06963 -11.82034 -11.69141 -11.52354 -11.45104 -11.29525 -11.17313 -10.88617 -10.87307 -10.78912 -10.75044 -10.11550 -10.05597 -9.95667 -9.79129 -9.68360 -9.63396 -9.47362 -8.82468 -8.73113 -8.60086 -6.83948 -5.70580 -3.08895 1.68193 2.16627 2.42619 2.65556 2.94249 3.36874 3.42850 3.45014 4.15612 4.28308 4.34938 4.46893 4.62895 4.73916 4.78794 4.86176 4.98966 5.05135 5.12591 5.13540 5.16163 5.28143 5.33262 5.39434 5.45800 5.47441 5.48829 5.55545 5.64671 5.66274 5.72643 5.80805 5.85100 5.91267 5.93817 6.06318 6.12514 6.25164 6.35354 6.44233 6.46454 6.52391 6.56170 6.63329 6.76052 6.81024 6.99960 7.29607 7.51112 7.51436 7.62976 7.82205 7.99624 8.31787 9.21274 9.82117 10.45810 11.35532 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016512 B = 0.002332 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.346490 B =12006.006519 C =12918.980826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.177 3.823 3 H 0.110 0.890 4 C -0.152 4.152 5 C 0.529 3.471 6 O -0.544 6.544 7 N -0.603 5.603 8 C 0.110 3.890 9 C -0.124 4.124 10 C -0.092 4.092 11 H 0.066 0.934 12 C 0.141 3.859 13 N -0.603 5.603 14 C -0.223 4.223 15 H 0.077 0.923 16 C -0.011 4.011 17 N -0.922 5.922 18 Si 0.913 3.087 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.290 1.290 22 C 0.170 3.830 23 C -0.109 4.109 24 H 0.068 0.932 25 C -0.128 4.128 26 C 0.106 3.894 27 N -0.366 5.366 28 C 0.057 3.943 29 C -0.278 4.278 30 C 0.042 3.958 31 N -0.299 5.299 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.082 0.918 38 H 0.059 0.941 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.021 0.979 42 H 0.020 0.980 43 H 0.251 0.749 44 H 0.089 0.911 45 H 0.013 0.987 46 H 0.068 0.932 47 H 0.076 0.924 48 H 0.080 0.920 49 H 0.083 0.917 50 H 0.172 0.828 51 H 0.146 0.854 52 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.744 8.847 -17.348 20.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.075 3.925 3 H 0.128 0.872 4 C -0.193 4.193 5 C 0.317 3.683 6 O -0.423 6.423 7 N -0.335 5.335 8 C -0.014 4.014 9 C -0.162 4.162 10 C -0.111 4.111 11 H 0.084 0.916 12 C 0.015 3.985 13 N -0.328 5.328 14 C -0.351 4.351 15 H 0.095 0.905 16 C -0.207 4.207 17 N -0.571 5.571 18 Si 0.743 3.257 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.217 1.217 22 C 0.045 3.955 23 C -0.129 4.129 24 H 0.087 0.913 25 C -0.166 4.166 26 C -0.016 4.016 27 N -0.149 5.149 28 C -0.089 4.089 29 C -0.307 4.307 30 C -0.144 4.144 31 N -0.120 5.120 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.101 0.899 38 H 0.078 0.922 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.039 0.961 42 H 0.038 0.962 43 H 0.061 0.939 44 H 0.107 0.893 45 H 0.031 0.969 46 H 0.087 0.913 47 H 0.094 0.906 48 H 0.099 0.901 49 H 0.101 0.899 50 H 0.189 0.811 51 H 0.164 0.836 52 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 6.764 10.301 -16.667 20.728 hybrid contribution -0.801 -1.507 0.358 1.744 sum 5.963 8.794 -16.309 19.465 Atomic orbital electron populations 1.22332 0.92051 1.03213 1.05073 1.20940 0.95357 0.96811 0.79434 0.87174 1.22073 1.03991 1.00974 0.92283 1.20045 0.79099 0.85239 0.83949 1.90675 1.40739 1.24767 1.86090 1.47974 1.54248 1.25929 1.05397 1.20644 0.99920 0.95744 0.85053 1.21447 0.98732 0.98674 0.97365 1.21801 0.97791 0.95703 0.95824 0.91587 1.21136 0.95333 0.88042 0.93947 1.44210 1.67284 1.09087 1.12263 1.19121 1.28539 0.94592 0.92897 0.90469 1.24788 1.01424 0.97188 0.97266 1.69894 1.51837 1.13703 1.21664 0.86023 0.79021 0.79843 0.80779 1.20533 1.21777 1.21749 1.21432 0.92302 0.97201 0.84597 1.22415 1.01265 0.96276 0.92952 0.91349 1.21869 0.99703 0.98698 0.96331 1.22494 0.94710 0.83205 1.01179 1.48962 1.19455 1.23915 1.22537 1.22551 0.99962 0.91070 0.95326 1.21517 0.99458 1.06584 1.03175 1.23888 0.99284 0.94006 0.97253 1.77381 1.02876 1.23964 1.07759 0.91640 0.91944 0.87870 0.88048 0.87987 0.89928 0.92247 0.90667 0.91028 0.96137 0.96226 0.93871 0.89298 0.96896 0.91296 0.90562 0.90131 0.89859 0.81078 0.83638 0.80194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.51 8.58 37.16 0.32 -1.19 16 2 C 0.18 1.73 3.05 -67.93 -0.21 1.52 16 3 H 0.11 1.23 7.96 -51.93 -0.41 0.81 16 4 C -0.15 -1.42 3.96 -27.88 -0.11 -1.53 16 5 C 0.53 6.23 7.47 -10.98 -0.08 6.15 16 6 O -0.54 -7.82 13.46 5.56 0.07 -7.74 16 7 N -0.60 -6.98 2.61 -174.33 -0.46 -7.43 16 8 C 0.11 1.35 5.74 -6.27 -0.04 1.32 16 9 C -0.12 -1.76 4.77 -28.30 -0.13 -1.90 16 10 C -0.09 -1.45 2.77 -89.88 -0.25 -1.70 16 11 H 0.07 0.92 7.70 -51.93 -0.40 0.52 16 12 C 0.14 2.84 6.82 -3.78 -0.03 2.82 16 13 N -0.60 -15.01 3.38 -172.13 -0.58 -15.59 16 14 C -0.22 -6.14 10.25 -15.06 -0.15 -6.29 16 15 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 16 C -0.01 -0.31 5.48 -17.43 -0.10 -0.41 16 17 N -0.92 -26.38 10.16 55.49 0.56 -25.81 16 18 Si 0.91 21.85 29.55 -169.99 -5.02 16.82 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 C 0.17 3.88 5.13 -3.41 -0.02 3.87 16 23 C -0.11 -1.83 2.94 -89.19 -0.26 -2.09 16 24 H 0.07 1.13 8.14 -51.92 -0.42 0.70 16 25 C -0.13 -1.70 4.50 -27.38 -0.12 -1.83 16 26 C 0.11 1.10 6.07 -2.40 -0.01 1.08 16 27 N -0.37 -3.79 3.52 -54.86 -0.19 -3.98 16 28 C 0.06 0.50 10.59 -17.23 -0.18 0.32 16 29 C -0.28 -2.38 10.80 -40.02 -0.43 -2.81 16 30 C 0.04 0.39 12.02 -17.37 -0.21 0.18 16 31 N -0.30 -3.51 12.58 30.62 0.39 -3.13 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.47 7.16 -51.93 -0.37 0.10 16 34 H 0.10 1.10 5.95 -51.93 -0.31 0.79 16 35 H 0.10 0.91 7.77 -51.93 -0.40 0.51 16 36 H 0.10 0.85 8.08 -51.93 -0.42 0.43 16 37 H 0.08 1.08 6.99 -51.93 -0.36 0.72 16 38 H 0.06 0.67 7.69 -51.93 -0.40 0.27 16 39 H 0.07 1.22 5.87 -51.93 -0.30 0.92 16 40 H 0.07 1.01 7.53 -51.93 -0.39 0.61 16 41 H 0.02 0.42 7.40 -51.93 -0.38 0.03 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 44 H 0.09 2.33 6.19 -51.93 -0.32 2.01 16 45 H 0.01 0.33 7.72 -51.93 -0.40 -0.07 16 46 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.08 1.13 5.47 -51.93 -0.28 0.85 16 48 H 0.08 0.67 6.42 -51.93 -0.33 0.33 16 49 H 0.08 0.83 7.82 -51.93 -0.41 0.42 16 50 H 0.17 1.06 7.27 -52.48 -0.38 0.68 16 51 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 52 H 0.18 1.13 8.06 -52.48 -0.42 0.71 16 LS Contribution 393.34 15.07 5.93 5.93 Total: -1.00 -32.33 393.34 -9.69 -42.02 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -8.37 Total: 1.40 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: -2.02 Total: -2.48 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: -0.28 Total: -55.94 kcal Atomic # 8 Polarization: -7.82 SS G_CDS: 0.07 Total: -7.74 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.33 -9.69 -42.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946848708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.735 kcal (2) G-P(sol) polarization free energy of solvation -32.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds