Wall clock time and date at job start Wed Apr 1 2020 05:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47405 * 2 1 4 4 C 1.53001 * 109.47204 * 120.00486 * 2 1 3 5 5 C 1.50702 * 109.46599 * 294.99819 * 4 2 1 6 6 O 1.21279 * 120.00408 * 0.02562 * 5 4 2 7 7 N 1.34788 * 119.99981 * 179.97438 * 5 4 2 8 8 C 1.43499 * 122.54657 * 179.97438 * 7 5 4 9 9 C 1.51734 * 114.25010 * 122.93572 * 8 7 5 10 10 C 1.51150 * 111.88163 * 82.62535 * 9 8 7 11 11 H 1.09004 * 110.70161 * 33.97295 * 10 9 8 12 12 C 1.53399 * 110.93947 * 156.72329 * 10 9 8 13 13 N 1.46606 * 108.09192 * 102.74776 * 12 10 9 14 14 C 1.36933 * 125.31785 * 178.69239 * 13 12 10 15 15 H 1.08000 * 119.99948 * 359.97438 * 14 13 12 16 16 C 1.38809 * 120.00358 * 179.97438 * 14 13 12 17 17 N 1.31621 * 119.99970 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00175 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47349 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47193 * 119.99878 * 18 16 14 21 21 H 1.48501 * 109.46679 * 239.99399 * 18 16 14 22 22 C 1.46659 * 109.36595 * 358.64813 * 13 12 10 23 23 C 1.54052 * 106.93554 * 18.29422 * 22 13 12 24 24 H 1.09009 * 110.61025 * 91.12190 * 23 22 13 25 25 C 1.51841 * 109.46371 * 214.13266 * 23 22 13 26 26 C 1.49549 * 122.54439 * 359.97438 * 7 5 4 27 27 N 1.46498 * 109.46870 * 239.99906 * 2 1 3 28 28 C 1.34945 * 126.04534 * 324.71579 * 27 2 1 29 29 C 1.35313 * 107.74958 * 179.83832 * 28 27 2 30 30 C 1.39864 * 107.91917 * 0.42452 * 29 28 27 31 31 N 1.30837 * 108.20615 * 359.73684 * 30 29 28 32 32 H 1.08997 * 109.47519 * 60.00241 * 1 2 3 33 33 H 1.09001 * 109.46915 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.47125 * 299.99376 * 1 2 3 35 35 H 1.08999 * 109.47444 * 175.00304 * 4 2 1 36 36 H 1.09002 * 109.47281 * 54.99250 * 4 2 1 37 37 H 1.08993 * 108.52910 * 1.69743 * 8 7 5 38 38 H 1.09001 * 108.52701 * 244.16448 * 8 7 5 39 39 H 1.08994 * 108.99640 * 322.00678 * 9 8 7 40 40 H 1.09000 * 108.93416 * 203.20246 * 9 8 7 41 41 H 1.09002 * 109.74633 * 343.08166 * 12 10 9 42 42 H 1.09000 * 109.74707 * 222.40825 * 12 10 9 43 43 H 0.96999 * 120.00549 * 179.97438 * 17 16 14 44 44 H 1.09001 * 109.96898 * 137.66646 * 22 13 12 45 45 H 1.09000 * 109.97200 * 258.92834 * 22 13 12 46 46 H 1.09004 * 109.00957 * 295.50439 * 25 23 22 47 47 H 1.08992 * 109.01033 * 54.29467 * 25 23 22 48 48 H 1.09006 * 110.26635 * 9.16553 * 26 7 5 49 49 H 1.08992 * 110.26451 * 131.11923 * 26 7 5 50 50 H 1.08007 * 126.12136 * 0.02562 * 28 27 2 51 51 H 1.08001 * 126.03992 * 180.15962 * 29 28 27 52 52 H 1.08004 * 125.89984 * 179.71568 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6413 0.0570 2.4765 6 8 1.0110 1.0868 2.3633 7 7 1.9844 -0.3920 3.7002 8 6 1.6341 0.3051 4.9046 9 6 0.8337 -0.5222 5.8932 10 6 1.7230 -1.4022 6.7413 11 1 2.6752 -0.9104 6.9400 12 6 1.0312 -1.7725 8.0595 13 7 0.5416 -3.1497 7.9455 14 6 -0.1087 -3.8428 8.9313 15 1 -0.2967 -3.3749 9.8864 16 6 -0.5263 -5.1468 8.7032 17 7 -0.2977 -5.7169 7.5391 18 14 -1.4127 -6.0925 10.0483 19 1 -1.5444 -5.2339 11.2527 20 1 -2.7626 -6.4853 9.5700 21 1 -0.6355 -7.3103 10.3916 22 6 0.8562 -3.6688 6.6104 23 6 1.9590 -2.7656 6.0262 24 1 2.9461 -3.1599 6.2683 25 6 1.7678 -2.6401 4.5251 26 6 2.7592 -1.6546 3.9059 27 7 2.0183 -0.6906 -1.1962 28 6 1.4432 -1.7592 -1.7864 29 6 2.1963 -2.0924 -2.8601 30 6 3.2738 -1.2028 -2.9227 31 7 3.1682 -0.3620 -1.9258 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3633 0.5137 0.8901 35 1 3.1263 -0.7995 1.2056 36 1 1.6053 -1.7199 1.2951 37 1 1.0505 1.1860 4.6376 38 1 2.5510 0.6361 5.3924 39 1 0.1324 -1.1505 5.3441 40 1 0.2737 0.1490 6.5443 41 1 0.1941 -1.0976 8.2382 42 1 1.7433 -1.7017 8.8816 43 1 -0.5891 -6.6282 7.3798 44 1 1.2161 -4.6949 6.6853 45 1 -0.0304 -3.6302 5.9776 46 1 1.9072 -3.6190 4.0663 47 1 0.7531 -2.2966 4.3240 48 1 3.1229 -2.0342 2.9510 49 1 3.5940 -1.4790 4.5843 50 1 0.5414 -2.2572 -1.4619 51 1 2.0023 -2.9046 -3.5450 52 1 4.0578 -1.2090 -3.6655 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000946848708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:56 Heat of formation + Delta-G solvation = 57.274944 kcal Electronic energy + Delta-G solvation = -31305.441472 eV Core-core repulsion = 27306.796982 eV Total energy + Delta-G solvation = -3998.644490 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.17869 -41.53521 -40.05461 -37.43741 -36.29484 -34.87312 -33.53211 -32.60693 -31.29207 -30.71325 -29.58344 -29.04008 -28.31562 -26.04020 -24.76478 -24.11504 -23.41620 -21.95427 -21.93312 -21.00342 -20.17833 -19.69982 -18.94052 -18.73338 -17.51980 -17.18149 -16.95839 -16.83424 -16.08447 -15.90341 -15.73580 -15.47605 -15.26806 -14.75519 -14.67891 -14.46422 -14.45118 -14.08825 -13.95525 -13.84476 -13.64391 -13.48357 -13.39284 -13.05487 -12.93452 -12.79402 -12.70966 -12.48148 -12.46975 -12.31000 -12.22945 -12.03658 -11.85698 -11.73080 -11.57796 -11.34710 -11.15984 -11.01652 -10.85267 -10.69879 -10.36756 -9.67008 -9.49387 -8.85701 -7.80124 -5.20905 1.00474 1.43132 1.45060 1.45280 1.54263 1.55729 2.01127 2.07967 2.48630 3.31008 3.38815 3.49052 3.61597 3.69367 3.77123 3.82654 3.99123 4.01353 4.07847 4.12781 4.14702 4.20997 4.29172 4.41942 4.47073 4.51075 4.65134 4.68633 4.70566 4.74795 4.75721 4.79160 4.83984 4.96002 4.97130 4.98111 5.06667 5.12620 5.16939 5.19304 5.21761 5.22485 5.31199 5.46125 5.56424 5.63899 5.78543 5.80841 5.86758 6.16125 6.30364 6.39158 6.83105 7.08857 7.13646 7.82791 8.43505 9.23559 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016512 B = 0.002332 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.346490 B =12006.006519 C =12918.980826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.180 3.820 3 H 0.091 0.909 4 C -0.142 4.142 5 C 0.528 3.472 6 O -0.573 6.573 7 N -0.604 5.604 8 C 0.117 3.883 9 C -0.114 4.114 10 C -0.079 4.079 11 H 0.099 0.901 12 C 0.133 3.867 13 N -0.626 5.626 14 C -0.240 4.240 15 H 0.077 0.923 16 C -0.066 4.066 17 N -0.947 5.947 18 Si 0.976 3.024 19 H -0.268 1.268 20 H -0.293 1.293 21 H -0.290 1.290 22 C 0.178 3.822 23 C -0.095 4.095 24 H 0.078 0.922 25 C -0.119 4.119 26 C 0.115 3.885 27 N -0.374 5.374 28 C 0.053 3.947 29 C -0.284 4.284 30 C 0.038 3.962 31 N -0.341 5.341 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.110 0.890 36 H 0.117 0.883 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.050 0.950 40 H 0.071 0.929 41 H 0.018 0.982 42 H 0.023 0.977 43 H 0.246 0.754 44 H 0.051 0.949 45 H -0.021 1.021 46 H 0.073 0.927 47 H 0.059 0.941 48 H 0.109 0.891 49 H 0.100 0.900 50 H 0.196 0.804 51 H 0.167 0.833 52 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.089 9.021 -18.256 21.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.078 3.922 3 H 0.109 0.891 4 C -0.182 4.182 5 C 0.317 3.683 6 O -0.454 6.454 7 N -0.336 5.336 8 C -0.007 4.007 9 C -0.152 4.152 10 C -0.097 4.097 11 H 0.117 0.883 12 C 0.008 3.992 13 N -0.352 5.352 14 C -0.370 4.370 15 H 0.095 0.905 16 C -0.259 4.259 17 N -0.596 5.596 18 Si 0.805 3.195 19 H -0.193 1.193 20 H -0.220 1.220 21 H -0.217 1.217 22 C 0.052 3.948 23 C -0.115 4.115 24 H 0.096 0.904 25 C -0.158 4.158 26 C -0.006 4.006 27 N -0.157 5.157 28 C -0.093 4.093 29 C -0.313 4.313 30 C -0.147 4.147 31 N -0.162 5.162 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.129 0.871 36 H 0.136 0.864 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.069 0.931 40 H 0.090 0.910 41 H 0.036 0.964 42 H 0.041 0.959 43 H 0.056 0.944 44 H 0.069 0.931 45 H -0.003 1.003 46 H 0.092 0.908 47 H 0.077 0.923 48 H 0.128 0.872 49 H 0.118 0.882 50 H 0.213 0.787 51 H 0.184 0.816 52 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 8.129 10.497 -17.573 22.024 hybrid contribution -1.269 -1.565 0.649 2.117 sum 6.860 8.932 -16.923 20.328 Atomic orbital electron populations 1.22240 0.91599 1.03966 1.04167 1.20817 0.95619 0.95985 0.79818 0.89120 1.22009 1.04529 1.01027 0.90655 1.20443 0.78357 0.84958 0.84548 1.90672 1.41978 1.26200 1.86511 1.48032 1.54211 1.26208 1.05138 1.20508 1.00323 0.94870 0.85008 1.21330 0.98290 0.98179 0.97428 1.21760 0.98951 0.95534 0.93499 0.88261 1.21376 0.95478 0.85706 0.96630 1.44560 1.67190 1.11064 1.12396 1.19468 1.28655 0.95162 0.93672 0.90481 1.25604 1.02657 0.98180 0.99457 1.70143 1.52692 1.13561 1.23236 0.85033 0.77439 0.78392 0.78624 1.19293 1.22030 1.21655 1.21198 0.92828 0.96872 0.83856 1.22276 0.99018 0.95167 0.95011 0.90391 1.21756 0.99903 1.00112 0.93982 1.22534 0.93712 0.81566 1.02827 1.48962 1.19531 1.24488 1.22694 1.23050 1.00564 0.90504 0.95195 1.21863 0.99040 1.06939 1.03450 1.24410 0.99974 0.93399 0.96962 1.77341 1.04163 1.25564 1.09141 0.91556 0.90331 0.89689 0.87139 0.86442 0.90820 0.90156 0.93097 0.91011 0.96446 0.95914 0.94450 0.93118 1.00307 0.90806 0.92268 0.87232 0.88223 0.78733 0.81572 0.77871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.74 8.58 71.98 0.62 -2.13 16 2 C 0.18 3.34 3.05 44.99 0.14 3.47 16 3 H 0.09 2.03 7.96 -2.39 -0.02 2.01 16 4 C -0.14 -2.33 3.96 29.85 0.12 -2.21 16 5 C 0.53 11.56 7.47 87.66 0.65 12.21 16 6 O -0.57 -16.13 13.46 -3.02 -0.04 -16.17 16 7 N -0.60 -12.51 2.61 -823.83 -2.15 -14.66 16 8 C 0.12 2.62 5.74 86.52 0.50 3.11 16 9 C -0.11 -3.11 4.77 29.57 0.14 -2.97 16 10 C -0.08 -2.34 2.77 -10.31 -0.03 -2.37 16 11 H 0.10 2.38 7.70 -2.38 -0.02 2.36 16 12 C 0.13 5.31 6.82 86.49 0.59 5.90 16 13 N -0.63 -31.89 3.38 -698.50 -2.36 -34.25 16 14 C -0.24 -13.52 10.25 84.03 0.86 -12.65 16 15 H 0.08 4.20 7.83 -2.91 -0.02 4.17 16 16 C -0.07 -3.76 5.48 84.86 0.47 -3.29 16 17 N -0.95 -55.98 10.16 21.65 0.22 -55.76 16 18 Si 0.98 45.65 29.55 68.60 2.03 47.68 16 19 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 20 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 21 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 22 C 0.18 8.38 5.13 86.70 0.44 8.83 16 23 C -0.10 -3.07 2.94 -9.87 -0.03 -3.10 16 24 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 25 C -0.12 -2.98 4.50 30.18 0.14 -2.85 16 26 C 0.11 1.97 6.07 85.75 0.52 2.49 16 27 N -0.37 -7.18 3.52 -327.49 -1.15 -8.33 16 28 C 0.05 0.81 10.59 83.54 0.89 1.69 16 29 C -0.28 -4.20 10.80 21.99 0.24 -3.96 16 30 C 0.04 0.65 12.02 85.23 1.02 1.67 16 31 N -0.34 -7.62 12.58 -57.02 -0.72 -8.34 16 32 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.08 1.05 7.16 -2.39 -0.02 1.03 16 34 H 0.08 1.80 5.95 -2.39 -0.01 1.79 16 35 H 0.11 1.66 7.77 -2.39 -0.02 1.65 16 36 H 0.12 1.60 8.08 -2.39 -0.02 1.58 16 37 H 0.07 1.83 6.99 -2.39 -0.02 1.81 16 38 H 0.08 1.51 7.69 -2.39 -0.02 1.49 16 39 H 0.05 1.65 5.87 -2.39 -0.01 1.64 16 40 H 0.07 1.95 7.53 -2.39 -0.02 1.94 16 41 H 0.02 0.71 7.40 -2.39 -0.02 0.69 16 42 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 44 H 0.05 2.77 6.19 -2.39 -0.01 2.76 16 45 H -0.02 -1.11 7.72 -2.39 -0.02 -1.13 16 46 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 47 H 0.06 1.73 5.47 -2.39 -0.01 1.71 16 48 H 0.11 1.33 6.42 -2.38 -0.02 1.32 16 49 H 0.10 1.49 7.82 -2.39 -0.02 1.47 16 50 H 0.20 1.85 7.27 -2.91 -0.02 1.82 16 51 H 0.17 1.65 8.06 -2.91 -0.02 1.63 16 52 H 0.20 2.14 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -73.62 393.34 4.01 -69.61 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: 0.91 Total: 16.37 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: 7.27 Total: 3.86 kcal Atomic # 7 Polarization: -115.18 SS G_CDS: -6.16 Total: -121.35 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: -0.04 Total: -16.17 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -73.62 4.01 -69.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946848708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.887 kcal (2) G-P(sol) polarization free energy of solvation -73.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds