Wall clock time and date at job start Wed Apr 1 2020 05:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09006 * 109.46755 * 2 1 4 4 C 1.50698 * 109.47196 * 119.99938 * 2 1 3 5 5 O 1.21283 * 119.99840 * 94.59499 * 4 2 1 6 6 N 1.34779 * 120.00121 * 274.59771 * 4 2 1 7 7 C 1.46927 * 120.64211 * 4.79144 * 6 4 2 8 8 C 1.53616 * 108.54044 * 126.32418 * 7 6 4 9 9 C 1.53045 * 109.26372 * 54.86622 * 8 7 6 10 10 C 1.53023 * 109.44220 * 58.57180 * 9 8 7 11 11 C 1.53189 * 109.34134 * 181.23948 * 10 9 8 12 12 N 1.46931 * 108.77408 * 305.37333 * 11 10 9 13 13 C 1.36944 * 120.64319 * 233.61215 * 12 11 10 14 14 H 1.07998 * 119.99532 * 31.64393 * 13 12 11 15 15 C 1.38814 * 120.00259 * 211.64352 * 13 12 11 16 16 N 1.31616 * 119.99640 * 10.12935 * 15 13 12 17 17 Si 1.86790 * 120.00077 * 190.13187 * 15 13 12 18 18 H 1.48501 * 109.47315 * 59.99535 * 17 15 13 19 19 H 1.48495 * 109.47498 * 180.02562 * 17 15 13 20 20 H 1.48508 * 109.46837 * 299.99827 * 17 15 13 21 21 C 1.46929 * 118.71959 * 53.63507 * 12 11 10 22 22 C 1.53039 * 109.39445 * 178.60167 * 9 8 7 23 23 C 1.53029 * 109.54398 * 298.56240 * 9 8 7 24 24 C 1.46928 * 120.64086 * 185.06344 * 6 4 2 25 25 N 1.46499 * 109.47265 * 240.00628 * 2 1 3 26 26 C 1.34948 * 126.03767 * 324.99136 * 25 2 1 27 27 C 1.35306 * 107.75035 * 179.97438 * 26 25 2 28 28 C 1.39871 * 107.91843 * 0.02562 * 27 26 25 29 29 N 1.30833 * 108.20172 * 359.73852 * 28 27 26 30 30 H 1.08997 * 109.47335 * 295.23558 * 1 2 3 31 31 H 1.09002 * 109.46868 * 55.24035 * 1 2 3 32 32 H 1.09004 * 109.46823 * 175.23496 * 1 2 3 33 33 H 1.09001 * 109.58235 * 246.15250 * 7 6 4 34 34 H 1.09002 * 109.58858 * 6.57850 * 7 6 4 35 35 H 1.08996 * 109.63326 * 294.86386 * 8 7 6 36 36 H 1.09000 * 109.43041 * 174.73511 * 8 7 6 37 37 H 1.09002 * 109.49345 * 301.19568 * 10 9 8 38 38 H 1.09003 * 109.49542 * 61.27471 * 10 9 8 39 39 H 1.08999 * 109.58923 * 185.58598 * 11 10 9 40 40 H 1.08993 * 109.70458 * 65.22601 * 11 10 9 41 41 H 0.97003 * 119.99883 * 179.97438 * 16 15 13 42 42 H 1.08993 * 109.59050 * 186.57080 * 21 12 11 43 43 H 1.09009 * 109.69876 * 66.21262 * 21 12 11 44 44 H 1.08999 * 109.49283 * 298.68409 * 22 9 8 45 45 H 1.08998 * 109.49598 * 58.77135 * 22 9 8 46 46 H 1.09002 * 109.49894 * 301.34167 * 23 9 8 47 47 H 1.09002 * 109.49553 * 181.25487 * 23 9 8 48 48 H 1.08997 * 109.59029 * 353.41438 * 24 6 4 49 49 H 1.09008 * 109.58060 * 113.69026 * 24 6 4 50 50 H 1.08007 * 126.12235 * 359.96272 * 26 25 2 51 51 H 1.08005 * 126.04330 * 180.02562 * 27 26 25 52 52 H 1.08002 * 125.89943 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.3139 -1.8889 1.1778 6 7 2.1688 -0.0361 2.3894 7 6 1.7342 1.3633 2.4973 8 6 0.7755 1.4863 3.6912 9 6 1.4610 0.9433 4.9473 10 6 2.7497 1.7276 5.2036 11 6 3.4497 1.1621 6.4433 12 7 2.5032 1.1730 7.5671 13 6 2.8329 1.7763 8.7514 14 1 3.4841 2.6378 8.7556 15 6 2.3300 1.2805 9.9465 16 7 1.7043 0.1227 9.9672 17 14 2.5413 2.2564 11.5252 18 1 1.8836 3.5799 11.3808 19 1 1.9208 1.5150 12.6523 20 1 3.9883 2.4498 11.7975 21 6 1.1963 0.5238 7.3958 22 6 0.5214 1.0965 6.1455 23 6 1.7958 -0.5366 4.7485 24 6 2.7606 -0.6843 3.5677 25 7 2.0184 -0.6905 -1.1962 26 6 1.4404 -1.7558 -1.7896 27 6 2.1962 -2.0920 -2.8603 28 6 3.2734 -1.2021 -2.9232 29 7 3.1650 -0.3582 -1.9293 30 1 -0.3634 0.4381 0.9295 31 1 -0.3633 0.5859 -0.8443 32 1 -0.3633 -1.0242 -0.0854 33 1 2.6017 2.0043 2.6542 34 1 1.2202 1.6579 1.5823 35 1 -0.1302 0.9127 3.4943 36 1 0.5171 2.5344 3.8423 37 1 3.4089 1.6362 4.3403 38 1 2.5096 2.7779 5.3688 39 1 4.3145 1.7788 6.6879 40 1 3.7734 0.1397 6.2482 41 1 1.3532 -0.2239 10.8024 42 1 0.5740 0.7192 8.2690 43 1 1.3328 -0.5512 7.2774 44 1 0.3013 2.1525 6.3025 45 1 -0.4053 0.5561 5.9526 46 1 0.8810 -1.0921 4.5423 47 1 2.2638 -0.9281 5.6517 48 1 2.9243 -1.7416 3.3596 49 1 3.7111 -0.2078 3.8080 50 1 0.5365 -2.2514 -1.4673 51 1 2.0021 -2.9041 -3.5454 52 1 4.0567 -1.2074 -3.6668 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957506892.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:59:46 Heat of formation + Delta-G solvation = 72.205215 kcal Electronic energy + Delta-G solvation = -31970.711661 eV Core-core repulsion = 27972.714596 eV Total energy + Delta-G solvation = -3997.997065 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.57390 -40.54386 -38.85043 -36.03303 -34.92921 -33.56652 -31.42512 -31.06926 -30.26221 -30.07004 -29.60825 -28.07358 -25.52992 -24.87944 -23.44852 -23.24678 -22.02697 -21.43924 -21.17949 -20.45683 -19.30431 -17.93424 -17.58048 -17.44216 -16.50630 -15.92923 -15.41032 -14.96337 -14.89194 -14.68001 -14.41269 -14.10575 -14.05299 -13.96079 -13.71825 -13.55546 -13.32492 -13.10834 -12.94995 -12.81573 -12.75792 -12.61184 -12.27608 -11.98610 -11.68316 -11.45611 -11.38232 -11.22349 -11.07228 -10.87648 -10.76545 -10.57777 -10.46194 -10.26890 -10.12363 -10.05117 -9.77451 -9.54314 -9.49299 -9.43834 -8.73912 -8.63138 -8.46873 -6.59619 -5.79237 -3.27154 1.64890 2.05669 2.39150 2.71878 2.91034 3.36232 3.41847 3.42455 4.01546 4.18494 4.36429 4.47333 4.63877 4.66125 4.76621 4.88398 4.95343 5.00583 5.10793 5.19858 5.26326 5.31460 5.35019 5.39889 5.43559 5.47087 5.58912 5.64042 5.73168 5.79799 5.85308 5.87250 5.95400 6.03975 6.04636 6.16769 6.31417 6.34082 6.45342 6.50421 6.52475 6.64246 6.66428 6.76816 6.82035 6.88921 6.98630 7.21172 7.38297 7.52621 7.70086 7.77895 7.90857 8.47620 9.22322 9.83832 10.42165 11.28482 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.032763 B = 0.002259 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.410521 B =12393.477624 C =12472.092800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.143 3.857 3 H 0.123 0.877 4 C 0.504 3.496 5 O -0.530 6.530 6 N -0.599 5.599 7 C 0.100 3.900 8 C -0.124 4.124 9 C -0.046 4.046 10 C -0.126 4.126 11 C 0.145 3.855 12 N -0.591 5.591 13 C -0.252 4.252 14 H 0.062 0.938 15 C 0.004 3.996 16 N -0.905 5.905 17 Si 0.904 3.096 18 H -0.284 1.284 19 H -0.291 1.291 20 H -0.283 1.283 21 C 0.171 3.829 22 C -0.130 4.130 23 C -0.123 4.123 24 C 0.112 3.888 25 N -0.357 5.357 26 C 0.076 3.924 27 C -0.279 4.279 28 C 0.048 3.952 29 N -0.298 5.298 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.050 0.950 38 H 0.058 0.942 39 H 0.050 0.950 40 H 0.018 0.982 41 H 0.254 0.746 42 H 0.086 0.914 43 H 0.019 0.981 44 H 0.054 0.946 45 H 0.046 0.954 46 H 0.059 0.941 47 H 0.092 0.908 48 H 0.087 0.913 49 H 0.073 0.927 50 H 0.170 0.830 51 H 0.147 0.853 52 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.315 0.533 -22.908 23.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.037 3.963 3 H 0.141 0.859 4 C 0.289 3.711 5 O -0.405 6.405 6 N -0.332 5.332 7 C -0.023 4.023 8 C -0.162 4.162 9 C -0.046 4.046 10 C -0.165 4.165 11 C 0.018 3.982 12 N -0.313 5.313 13 C -0.382 4.382 14 H 0.080 0.920 15 C -0.195 4.195 16 N -0.550 5.550 17 Si 0.734 3.266 18 H -0.210 1.210 19 H -0.216 1.216 20 H -0.209 1.209 21 C 0.046 3.954 22 C -0.169 4.169 23 C -0.161 4.161 24 C -0.009 4.009 25 N -0.139 5.139 26 C -0.069 4.069 27 C -0.308 4.308 28 C -0.139 4.139 29 N -0.118 5.118 30 H 0.109 0.891 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.036 0.964 41 H 0.064 0.936 42 H 0.104 0.896 43 H 0.037 0.963 44 H 0.073 0.927 45 H 0.064 0.936 46 H 0.077 0.923 47 H 0.110 0.890 48 H 0.105 0.895 49 H 0.092 0.908 50 H 0.187 0.813 51 H 0.165 0.835 52 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -3.754 0.887 -22.046 22.380 hybrid contribution -0.283 -0.238 0.543 0.657 sum -4.037 0.649 -21.502 21.888 Atomic orbital electron populations 1.22169 0.90361 1.04604 1.04806 1.21138 0.96420 0.97420 0.81344 0.85914 1.20599 0.78655 0.87439 0.84394 1.90732 1.50131 1.15302 1.84374 1.48108 1.60952 1.13221 1.10949 1.22049 0.99157 0.81723 0.99354 1.22107 0.97782 1.01858 0.94439 1.20378 0.96158 0.94240 0.93864 1.22149 0.95977 0.99541 0.98795 1.20923 0.92401 0.97148 0.87710 1.43971 1.11548 1.65622 1.10204 1.19115 1.28497 1.07085 0.83476 0.92033 1.25161 1.00911 0.95662 0.97729 1.69955 1.41457 1.17634 1.25909 0.86355 0.77900 0.79306 0.83059 1.21043 1.21638 1.20899 1.20790 0.86853 0.93565 0.94205 1.22239 0.96863 1.01029 0.96776 1.22027 0.99218 0.96832 0.98004 1.21767 0.96456 0.98922 0.83803 1.48256 1.19908 1.24525 1.21258 1.22423 0.99783 0.90445 0.94298 1.21462 0.99357 1.06492 1.03523 1.23874 0.99072 0.93872 0.97070 1.77360 1.02359 1.24496 1.07600 0.89068 0.90042 0.90612 0.90386 0.90435 0.91815 0.90658 0.93146 0.92336 0.93187 0.96395 0.93585 0.89605 0.96262 0.92709 0.93574 0.92263 0.89015 0.89481 0.90838 0.81294 0.83526 0.80029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.08 8.63 37.16 0.32 -0.76 16 2 C 0.14 1.42 2.85 -69.08 -0.20 1.23 16 3 H 0.12 1.06 6.71 -51.93 -0.35 0.72 16 4 C 0.50 6.57 6.90 -10.99 -0.08 6.50 16 5 O -0.53 -8.97 15.78 5.55 0.09 -8.88 16 6 N -0.60 -7.22 2.97 -172.50 -0.51 -7.73 16 7 C 0.10 0.95 5.49 -3.49 -0.02 0.93 16 8 C -0.12 -1.35 4.92 -26.39 -0.13 -1.48 16 9 C -0.05 -0.67 0.51 -154.44 -0.08 -0.74 16 10 C -0.13 -1.95 4.14 -26.62 -0.11 -2.06 16 11 C 0.14 2.85 6.04 -3.71 -0.02 2.83 16 12 N -0.59 -14.11 2.99 -172.32 -0.51 -14.62 16 13 C -0.25 -6.73 9.58 -15.06 -0.14 -6.88 16 14 H 0.06 1.63 7.85 -52.49 -0.41 1.21 16 15 C 0.00 0.11 5.06 -17.43 -0.09 0.02 16 16 N -0.91 -25.75 11.04 55.49 0.61 -25.13 16 17 Si 0.90 21.41 29.56 -169.99 -5.03 16.38 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 C 0.17 3.87 4.78 -3.71 -0.02 3.85 16 22 C -0.13 -2.26 4.90 -26.61 -0.13 -2.40 16 23 C -0.12 -1.82 4.14 -26.62 -0.11 -1.93 16 24 C 0.11 1.54 5.97 -3.71 -0.02 1.52 16 25 N -0.36 -4.23 3.24 -55.99 -0.18 -4.41 16 26 C 0.08 0.80 10.27 -17.23 -0.18 0.62 16 27 C -0.28 -2.75 10.80 -40.02 -0.43 -3.19 16 28 C 0.05 0.51 12.03 -17.37 -0.21 0.30 16 29 N -0.30 -3.90 12.58 30.62 0.39 -3.51 16 30 H 0.09 0.53 7.22 -51.93 -0.37 0.15 16 31 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.52 6.91 -51.93 -0.36 0.16 16 33 H 0.08 0.74 6.66 -51.93 -0.35 0.40 16 34 H 0.08 0.53 4.90 -51.93 -0.25 0.28 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.05 0.69 4.98 -51.93 -0.26 0.43 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.05 1.00 7.93 -51.93 -0.41 0.58 16 40 H 0.02 0.36 6.73 -51.93 -0.35 0.01 16 41 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 42 H 0.09 2.23 6.10 -51.93 -0.32 1.91 16 43 H 0.02 0.46 6.67 -51.92 -0.35 0.11 16 44 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 45 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 47 H 0.09 1.60 4.99 -51.93 -0.26 1.34 16 48 H 0.09 1.32 7.00 -51.93 -0.36 0.95 16 49 H 0.07 1.01 6.74 -51.92 -0.35 0.66 16 50 H 0.17 1.34 7.14 -52.48 -0.37 0.96 16 51 H 0.15 1.07 8.06 -52.48 -0.42 0.65 16 52 H 0.18 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 386.46 15.07 5.82 5.82 Total: -1.00 -33.13 386.46 -9.03 -42.16 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -8.07 Total: 1.56 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: -1.64 Total: -1.64 kcal Atomic # 7 Polarization: -55.19 SS G_CDS: -0.21 Total: -55.40 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: 0.09 Total: -8.88 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.13 -9.03 -42.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957506892.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.368 kcal (2) G-P(sol) polarization free energy of solvation -33.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds