Wall clock time and date at job start Wed Apr 1 2020 05:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09006 * 109.46755 * 2 1 4 4 C 1.50698 * 109.47196 * 119.99938 * 2 1 3 5 5 O 1.21283 * 119.99840 * 94.59499 * 4 2 1 6 6 N 1.34779 * 120.00121 * 274.59771 * 4 2 1 7 7 C 1.46927 * 120.64211 * 4.79144 * 6 4 2 8 8 C 1.53616 * 108.54044 * 126.32418 * 7 6 4 9 9 C 1.53045 * 109.26372 * 54.86622 * 8 7 6 10 10 C 1.53023 * 109.44220 * 58.57180 * 9 8 7 11 11 C 1.53189 * 109.34134 * 181.23948 * 10 9 8 12 12 N 1.46931 * 108.77408 * 305.37333 * 11 10 9 13 13 C 1.36944 * 120.64319 * 233.61215 * 12 11 10 14 14 H 1.07998 * 119.99532 * 31.64393 * 13 12 11 15 15 C 1.38814 * 120.00259 * 211.64352 * 13 12 11 16 16 N 1.31616 * 119.99640 * 10.12935 * 15 13 12 17 17 Si 1.86790 * 120.00077 * 190.13187 * 15 13 12 18 18 H 1.48501 * 109.47315 * 59.99535 * 17 15 13 19 19 H 1.48495 * 109.47498 * 180.02562 * 17 15 13 20 20 H 1.48508 * 109.46837 * 299.99827 * 17 15 13 21 21 C 1.46929 * 118.71959 * 53.63507 * 12 11 10 22 22 C 1.53039 * 109.39445 * 178.60167 * 9 8 7 23 23 C 1.53029 * 109.54398 * 298.56240 * 9 8 7 24 24 C 1.46928 * 120.64086 * 185.06344 * 6 4 2 25 25 N 1.46499 * 109.47265 * 240.00628 * 2 1 3 26 26 C 1.34948 * 126.03767 * 324.99136 * 25 2 1 27 27 C 1.35306 * 107.75035 * 179.97438 * 26 25 2 28 28 C 1.39871 * 107.91843 * 0.02562 * 27 26 25 29 29 N 1.30833 * 108.20172 * 359.73852 * 28 27 26 30 30 H 1.08997 * 109.47335 * 295.23558 * 1 2 3 31 31 H 1.09002 * 109.46868 * 55.24035 * 1 2 3 32 32 H 1.09004 * 109.46823 * 175.23496 * 1 2 3 33 33 H 1.09001 * 109.58235 * 246.15250 * 7 6 4 34 34 H 1.09002 * 109.58858 * 6.57850 * 7 6 4 35 35 H 1.08996 * 109.63326 * 294.86386 * 8 7 6 36 36 H 1.09000 * 109.43041 * 174.73511 * 8 7 6 37 37 H 1.09002 * 109.49345 * 301.19568 * 10 9 8 38 38 H 1.09003 * 109.49542 * 61.27471 * 10 9 8 39 39 H 1.08999 * 109.58923 * 185.58598 * 11 10 9 40 40 H 1.08993 * 109.70458 * 65.22601 * 11 10 9 41 41 H 0.97003 * 119.99883 * 179.97438 * 16 15 13 42 42 H 1.08993 * 109.59050 * 186.57080 * 21 12 11 43 43 H 1.09009 * 109.69876 * 66.21262 * 21 12 11 44 44 H 1.08999 * 109.49283 * 298.68409 * 22 9 8 45 45 H 1.08998 * 109.49598 * 58.77135 * 22 9 8 46 46 H 1.09002 * 109.49894 * 301.34167 * 23 9 8 47 47 H 1.09002 * 109.49553 * 181.25487 * 23 9 8 48 48 H 1.08997 * 109.59029 * 353.41438 * 24 6 4 49 49 H 1.09008 * 109.58060 * 113.69026 * 24 6 4 50 50 H 1.08007 * 126.12235 * 359.96272 * 26 25 2 51 51 H 1.08005 * 126.04330 * 180.02562 * 27 26 25 52 52 H 1.08002 * 125.89943 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.3139 -1.8889 1.1778 6 7 2.1688 -0.0361 2.3894 7 6 1.7342 1.3633 2.4973 8 6 0.7755 1.4863 3.6912 9 6 1.4610 0.9433 4.9473 10 6 2.7497 1.7276 5.2036 11 6 3.4497 1.1621 6.4433 12 7 2.5032 1.1730 7.5671 13 6 2.8329 1.7763 8.7514 14 1 3.4841 2.6378 8.7556 15 6 2.3300 1.2805 9.9465 16 7 1.7043 0.1227 9.9672 17 14 2.5413 2.2564 11.5252 18 1 1.8836 3.5799 11.3808 19 1 1.9208 1.5150 12.6523 20 1 3.9883 2.4498 11.7975 21 6 1.1963 0.5238 7.3958 22 6 0.5214 1.0965 6.1455 23 6 1.7958 -0.5366 4.7485 24 6 2.7606 -0.6843 3.5677 25 7 2.0184 -0.6905 -1.1962 26 6 1.4404 -1.7558 -1.7896 27 6 2.1962 -2.0920 -2.8603 28 6 3.2734 -1.2021 -2.9232 29 7 3.1650 -0.3582 -1.9293 30 1 -0.3634 0.4381 0.9295 31 1 -0.3633 0.5859 -0.8443 32 1 -0.3633 -1.0242 -0.0854 33 1 2.6017 2.0043 2.6542 34 1 1.2202 1.6579 1.5823 35 1 -0.1302 0.9127 3.4943 36 1 0.5171 2.5344 3.8423 37 1 3.4089 1.6362 4.3403 38 1 2.5096 2.7779 5.3688 39 1 4.3145 1.7788 6.6879 40 1 3.7734 0.1397 6.2482 41 1 1.3532 -0.2239 10.8024 42 1 0.5740 0.7192 8.2690 43 1 1.3328 -0.5512 7.2774 44 1 0.3013 2.1525 6.3025 45 1 -0.4053 0.5561 5.9526 46 1 0.8810 -1.0921 4.5423 47 1 2.2638 -0.9281 5.6517 48 1 2.9243 -1.7416 3.3596 49 1 3.7111 -0.2078 3.8080 50 1 0.5365 -2.2514 -1.4673 51 1 2.0021 -2.9041 -3.5454 52 1 4.0567 -1.2074 -3.6668 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957506892.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:59:45 Heat of formation + Delta-G solvation = 52.117219 kcal Electronic energy + Delta-G solvation = -31971.582742 eV Core-core repulsion = 27972.714596 eV Total energy + Delta-G solvation = -3998.868146 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.39004 -41.57167 -40.05025 -37.43100 -35.76579 -35.04720 -33.03711 -32.21701 -31.62269 -31.01150 -30.38154 -29.48109 -26.86571 -25.96555 -24.78616 -24.30413 -23.52462 -22.51664 -22.00031 -21.65519 -20.33607 -19.23839 -18.74253 -18.28101 -18.03629 -16.90966 -16.82530 -16.38476 -15.84236 -15.72914 -15.66137 -15.27787 -15.22814 -15.09531 -14.89146 -14.68294 -14.55150 -14.42830 -14.15348 -13.71138 -13.51344 -13.41431 -13.20302 -13.07828 -13.00710 -12.86729 -12.73521 -12.65951 -12.53690 -12.29101 -12.15250 -12.10614 -11.77703 -11.68044 -11.66363 -11.28351 -11.07584 -11.02426 -10.89439 -10.49267 -10.35186 -9.68825 -9.50693 -8.55600 -7.84556 -5.35419 0.84880 1.26055 1.46049 1.47295 1.52697 1.54166 1.97326 2.01604 2.50855 3.21360 3.30039 3.51765 3.70540 3.73831 3.80850 3.82880 3.84654 3.98262 4.11299 4.13142 4.23905 4.29198 4.45679 4.51655 4.54164 4.58538 4.63394 4.67939 4.73011 4.74018 4.79778 4.81417 4.85949 4.89894 5.00208 5.05251 5.07824 5.11005 5.16754 5.18898 5.30247 5.33391 5.43323 5.49981 5.57773 5.61308 5.68694 5.74868 5.87287 6.04747 6.28869 6.43745 6.75200 6.94738 7.19030 7.90480 8.42313 9.19890 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.032763 B = 0.002259 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.410521 B =12393.477624 C =12472.092800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.145 3.855 3 H 0.139 0.861 4 C 0.501 3.499 5 O -0.577 6.577 6 N -0.596 5.596 7 C 0.098 3.902 8 C -0.115 4.115 9 C -0.042 4.042 10 C -0.111 4.111 11 C 0.139 3.861 12 N -0.608 5.608 13 C -0.260 4.260 14 H 0.063 0.937 15 C -0.051 4.051 16 N -0.936 5.936 17 Si 0.967 3.033 18 H -0.276 1.276 19 H -0.296 1.296 20 H -0.277 1.277 21 C 0.179 3.821 22 C -0.117 4.117 23 C -0.112 4.112 24 C 0.120 3.880 25 N -0.368 5.368 26 C 0.065 3.935 27 C -0.286 4.286 28 C 0.042 3.958 29 N -0.338 5.338 30 H 0.106 0.894 31 H 0.100 0.900 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.115 0.885 35 H 0.075 0.925 36 H 0.095 0.905 37 H 0.077 0.923 38 H 0.060 0.940 39 H 0.044 0.956 40 H 0.011 0.989 41 H 0.248 0.752 42 H 0.046 0.954 43 H -0.005 1.005 44 H 0.054 0.946 45 H 0.061 0.939 46 H 0.058 0.942 47 H 0.056 0.944 48 H 0.068 0.932 49 H 0.074 0.926 50 H 0.189 0.811 51 H 0.169 0.831 52 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.231 2.463 -25.565 26.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.039 3.961 3 H 0.157 0.843 4 C 0.288 3.712 5 O -0.456 6.456 6 N -0.328 5.328 7 C -0.024 4.024 8 C -0.153 4.153 9 C -0.042 4.042 10 C -0.150 4.150 11 C 0.014 3.986 12 N -0.332 5.332 13 C -0.391 4.391 14 H 0.080 0.920 15 C -0.246 4.246 16 N -0.583 5.583 17 Si 0.795 3.205 18 H -0.202 1.202 19 H -0.222 1.222 20 H -0.203 1.203 21 C 0.053 3.947 22 C -0.156 4.156 23 C -0.150 4.150 24 C -0.002 4.002 25 N -0.151 5.151 26 C -0.080 4.080 27 C -0.315 4.315 28 C -0.144 4.144 29 N -0.159 5.159 30 H 0.125 0.875 31 H 0.119 0.881 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.133 0.867 35 H 0.093 0.907 36 H 0.113 0.887 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.062 0.938 40 H 0.028 0.972 41 H 0.057 0.943 42 H 0.064 0.936 43 H 0.013 0.987 44 H 0.072 0.928 45 H 0.080 0.920 46 H 0.077 0.923 47 H 0.075 0.925 48 H 0.086 0.914 49 H 0.092 0.908 50 H 0.206 0.794 51 H 0.187 0.813 52 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -4.667 2.861 -24.733 25.332 hybrid contribution 0.069 -0.921 1.362 1.646 sum -4.598 1.940 -23.371 23.898 Atomic orbital electron populations 1.22223 0.87705 1.05039 1.06447 1.21337 0.98299 0.97271 0.79195 0.84307 1.21260 0.77676 0.86991 0.85299 1.90710 1.52204 1.17527 1.85162 1.48160 1.60387 1.14169 1.10084 1.22291 0.99534 0.80028 1.00497 1.22030 0.97982 1.02910 0.92385 1.20328 0.95322 0.93838 0.94696 1.21990 0.96488 0.99251 0.97255 1.21075 0.92143 0.96976 0.88382 1.44227 1.12858 1.65517 1.10595 1.19450 1.27809 1.07050 0.84759 0.91963 1.25904 1.01349 0.96669 1.00715 1.70138 1.42816 1.19232 1.26071 0.85354 0.77865 0.78056 0.79221 1.20190 1.22189 1.20337 1.20566 0.86378 0.92486 0.95230 1.22036 0.97603 1.00534 0.95422 1.21851 0.99086 0.97159 0.96951 1.21498 0.96256 0.98233 0.84240 1.48452 1.19835 1.25143 1.21641 1.22908 1.00516 0.90235 0.94370 1.21846 0.98966 1.06857 1.03823 1.24424 0.99741 0.93332 0.96921 1.77287 1.03613 1.26129 1.08900 0.87539 0.88091 0.90951 0.89593 0.86679 0.90650 0.88700 0.90497 0.92083 0.93757 0.97156 0.94264 0.93564 0.98732 0.92751 0.92048 0.92290 0.92544 0.91393 0.90797 0.79368 0.81345 0.77554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 8.63 71.98 0.62 -0.88 16 2 C 0.14 2.46 2.85 44.25 0.13 2.59 16 3 H 0.14 1.86 6.71 -2.38 -0.02 1.84 16 4 C 0.50 12.14 6.90 87.66 0.60 12.74 16 5 O -0.58 -19.35 15.78 -3.04 -0.05 -19.39 16 6 N -0.60 -12.94 2.97 -818.06 -2.43 -15.37 16 7 C 0.10 1.43 5.49 86.51 0.47 1.91 16 8 C -0.12 -2.02 4.92 30.82 0.15 -1.87 16 9 C -0.04 -1.12 0.51 -52.14 -0.03 -1.15 16 10 C -0.11 -3.24 4.14 30.67 0.13 -3.11 16 11 C 0.14 5.55 6.04 86.36 0.52 6.07 16 12 N -0.61 -29.82 2.99 -699.08 -2.09 -31.90 16 13 C -0.26 -14.20 9.58 84.03 0.81 -13.40 16 14 H 0.06 3.32 7.85 -2.91 -0.02 3.30 16 15 C -0.05 -2.86 5.06 84.86 0.43 -2.43 16 16 N -0.94 -55.51 11.04 21.65 0.24 -55.27 16 17 Si 0.97 44.87 29.56 68.60 2.03 46.89 16 18 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 19 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 20 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 21 C 0.18 8.38 4.78 86.36 0.41 8.79 16 22 C -0.12 -3.99 4.90 30.67 0.15 -3.84 16 23 C -0.11 -3.31 4.14 30.67 0.13 -3.18 16 24 C 0.12 3.25 5.97 86.36 0.52 3.76 16 25 N -0.37 -8.00 3.24 -331.06 -1.07 -9.07 16 26 C 0.07 1.24 10.27 83.54 0.86 2.10 16 27 C -0.29 -5.12 10.80 21.99 0.24 -4.88 16 28 C 0.04 0.82 12.03 85.24 1.03 1.85 16 29 N -0.34 -8.37 12.58 -57.02 -0.72 -9.09 16 30 H 0.11 0.71 7.22 -2.39 -0.02 0.70 16 31 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.07 0.78 6.91 -2.39 -0.02 0.76 16 33 H 0.09 1.21 6.66 -2.39 -0.02 1.20 16 34 H 0.12 0.91 4.90 -2.39 -0.01 0.90 16 35 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.08 1.87 4.98 -2.39 -0.01 1.86 16 38 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.04 1.77 7.93 -2.39 -0.02 1.75 16 40 H 0.01 0.43 6.73 -2.39 -0.02 0.42 16 41 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 42 H 0.05 2.51 6.10 -2.39 -0.01 2.50 16 43 H -0.01 -0.27 6.67 -2.38 -0.02 -0.29 16 44 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 46 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 47 H 0.06 2.07 4.99 -2.39 -0.01 2.06 16 48 H 0.07 2.11 7.00 -2.39 -0.02 2.09 16 49 H 0.07 1.98 6.74 -2.38 -0.02 1.96 16 50 H 0.19 2.60 7.14 -2.91 -0.02 2.58 16 51 H 0.17 2.08 8.06 -2.91 -0.02 2.05 16 52 H 0.21 2.60 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -76.43 386.46 4.00 -72.43 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: 0.92 Total: 15.69 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: 7.16 Total: 5.07 kcal Atomic # 7 Polarization: -114.63 SS G_CDS: -6.06 Total: -120.70 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -0.05 Total: -19.39 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Total: -76.43 4.00 -72.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957506892.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.547 kcal (2) G-P(sol) polarization free energy of solvation -76.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds