Wall clock time and date at job start Wed Apr 1 2020 05:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47520 * 2 1 4 4 C 1.50705 * 109.46948 * 240.00289 * 2 1 3 5 5 O 1.21282 * 120.00135 * 249.36619 * 4 2 1 6 6 N 1.34775 * 119.99995 * 69.36485 * 4 2 1 7 7 C 1.46930 * 120.64384 * 3.07406 * 6 4 2 8 8 C 1.53621 * 108.53759 * 126.32888 * 7 6 4 9 9 C 1.53040 * 109.26057 * 54.86737 * 8 7 6 10 10 C 1.53034 * 109.44169 * 58.57611 * 9 8 7 11 11 C 1.53183 * 109.33931 * 181.23072 * 10 9 8 12 12 N 1.46937 * 108.77899 * 305.37408 * 11 10 9 13 13 C 1.36931 * 120.64013 * 233.61471 * 12 11 10 14 14 H 1.08004 * 119.99978 * 151.33465 * 13 12 11 15 15 C 1.38811 * 120.00462 * 331.33243 * 13 12 11 16 16 N 1.31625 * 119.99532 * 346.73432 * 15 13 12 17 17 Si 1.86800 * 120.00457 * 166.73487 * 15 13 12 18 18 H 1.48500 * 109.47296 * 94.94484 * 17 15 13 19 19 H 1.48499 * 109.47133 * 214.94558 * 17 15 13 20 20 H 1.48498 * 109.46803 * 334.94195 * 17 15 13 21 21 C 1.46924 * 118.71568 * 53.63536 * 12 11 10 22 22 C 1.53053 * 109.39233 * 178.59943 * 9 8 7 23 23 C 1.53036 * 109.55082 * 298.56351 * 9 8 7 24 24 C 1.46931 * 120.64465 * 183.36520 * 6 4 2 25 25 N 1.46496 * 109.47210 * 120.00610 * 2 1 3 26 26 C 1.34947 * 126.03689 * 34.99810 * 25 2 1 27 27 C 1.35320 * 107.74789 * 180.02562 * 26 25 2 28 28 C 1.39872 * 107.91567 * 359.97438 * 27 26 25 29 29 N 1.30840 * 108.20480 * 0.27246 * 28 27 26 30 30 H 1.09002 * 109.47037 * 293.70003 * 1 2 3 31 31 H 1.08998 * 109.47500 * 53.69591 * 1 2 3 32 32 H 1.08996 * 109.47557 * 173.69801 * 1 2 3 33 33 H 1.09000 * 109.59233 * 246.15935 * 7 6 4 34 34 H 1.09005 * 109.58426 * 6.59198 * 7 6 4 35 35 H 1.09002 * 109.62964 * 294.87394 * 8 7 6 36 36 H 1.08998 * 109.42740 * 174.74286 * 8 7 6 37 37 H 1.09004 * 109.48928 * 301.19449 * 10 9 8 38 38 H 1.09005 * 109.48817 * 61.27108 * 10 9 8 39 39 H 1.09003 * 109.58915 * 185.58654 * 11 10 9 40 40 H 1.09000 * 109.70428 * 65.22965 * 11 10 9 41 41 H 0.97000 * 119.99612 * 180.02562 * 16 15 13 42 42 H 1.08996 * 109.58563 * 186.56709 * 21 12 11 43 43 H 1.09000 * 109.70090 * 66.21837 * 21 12 11 44 44 H 1.08998 * 109.49617 * 298.69395 * 22 9 8 45 45 H 1.09007 * 109.48931 * 58.78137 * 22 9 8 46 46 H 1.08991 * 109.49099 * 301.34137 * 23 9 8 47 47 H 1.09001 * 109.49010 * 181.25829 * 23 9 8 48 48 H 1.08996 * 109.58584 * 353.39952 * 24 6 4 49 49 H 1.09002 * 109.59032 * 113.68521 * 24 6 4 50 50 H 1.07998 * 126.13111 * 359.96462 * 26 25 2 51 51 H 1.07999 * 126.04611 * 180.02562 * 27 26 25 52 52 H 1.08001 * 125.89395 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 8 2.5833 -1.7858 -1.1275 6 7 1.8690 -0.1506 -2.4456 7 6 1.2641 1.1815 -2.5813 8 6 2.2145 2.0684 -3.3999 9 6 2.5247 1.3812 -4.7317 10 6 1.2208 1.1357 -5.4941 11 6 1.5310 0.4203 -6.8126 12 7 2.5250 1.2073 -7.5553 13 6 2.2876 1.5898 -8.8484 14 1 2.7333 2.4946 -9.2345 15 6 1.4739 0.8146 -9.6633 16 7 1.1437 -0.4049 -9.2945 17 14 0.8477 1.5022 -11.2834 18 1 1.7515 1.0792 -12.3831 19 1 -0.5214 0.9890 -11.5427 20 1 0.8151 2.9852 -11.2120 21 6 3.7788 1.5755 -6.8836 22 6 3.4436 2.2782 -5.5645 23 6 3.2206 0.0440 -4.4680 24 6 2.2868 -0.8632 -3.6608 25 7 2.0183 -0.6907 1.1961 26 6 1.4402 -1.7560 1.7893 27 6 2.1961 -2.0926 2.8600 28 6 3.2734 -1.2027 2.9229 29 7 3.1648 -0.3585 1.9291 30 1 -0.3633 0.4131 0.9410 31 1 -0.3634 0.6084 -0.8281 32 1 -0.3634 -1.0214 -0.1128 33 1 0.3060 1.0973 -3.0942 34 1 1.1152 1.6175 -1.5934 35 1 3.1404 2.2222 -2.8456 36 1 1.7392 3.0309 -3.5892 37 1 0.5580 0.5153 -4.8907 38 1 0.7365 2.0896 -5.7030 39 1 0.6194 0.3317 -7.4036 40 1 1.9309 -0.5726 -6.6067 41 1 0.5755 -0.9468 -9.8641 42 1 4.3509 2.2492 -7.5215 43 1 4.3645 0.6787 -6.6814 44 1 2.9395 3.2219 -5.7729 45 1 4.3629 2.4708 -5.0111 46 1 4.1375 0.2161 -3.9044 47 1 3.4612 -0.4342 -5.4175 48 1 2.8132 -1.7771 -3.3856 49 1 1.4097 -1.1124 -4.2581 50 1 0.5356 -2.2508 1.4678 51 1 2.0024 -2.9052 3.5445 52 1 4.0567 -1.2083 3.6664 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957506895.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:59:53 Heat of formation + Delta-G solvation = 73.917652 kcal Electronic energy + Delta-G solvation = -32056.138232 eV Core-core repulsion = 28058.215424 eV Total energy + Delta-G solvation = -3997.922808 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.54117 -40.51388 -38.82415 -36.02984 -34.94500 -33.57470 -31.34555 -31.16439 -30.20472 -29.92965 -29.60171 -28.08615 -25.59448 -24.83633 -23.34840 -23.26491 -22.05541 -21.41685 -21.14786 -20.39399 -19.37883 -17.96183 -17.51262 -17.37413 -16.41328 -15.92007 -15.59521 -14.97077 -14.75418 -14.60056 -14.21457 -14.18503 -14.07755 -13.91161 -13.72150 -13.56510 -13.35438 -13.12077 -12.95792 -12.85556 -12.71094 -12.54969 -12.16448 -12.06845 -11.55199 -11.50447 -11.48199 -11.18830 -11.04219 -10.83808 -10.73114 -10.57086 -10.43460 -10.22194 -10.08053 -10.05505 -9.75359 -9.58476 -9.48357 -9.39235 -8.71081 -8.62209 -8.45404 -6.64318 -5.79763 -3.23973 1.68958 2.14841 2.37097 2.75122 2.93972 3.34763 3.42163 3.43807 4.04023 4.19222 4.38067 4.47325 4.63021 4.69461 4.79907 4.89398 4.96653 5.05535 5.10353 5.22234 5.27690 5.33005 5.37011 5.41183 5.46458 5.51460 5.60964 5.65147 5.77860 5.83384 5.86372 5.87605 5.98199 6.04163 6.08783 6.16072 6.29798 6.34694 6.48253 6.51459 6.52938 6.61108 6.72146 6.79112 6.80646 6.89084 6.97743 7.25229 7.37656 7.56344 7.68725 7.77651 7.95493 8.45141 9.21243 9.83974 10.40727 11.28037 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.027377 B = 0.002374 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.507351 B =11790.063979 C =11986.854381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.143 3.857 3 H 0.125 0.875 4 C 0.502 3.498 5 O -0.528 6.528 6 N -0.598 5.598 7 C 0.100 3.900 8 C -0.125 4.125 9 C -0.047 4.047 10 C -0.133 4.133 11 C 0.170 3.830 12 N -0.591 5.591 13 C -0.248 4.248 14 H 0.064 0.936 15 C 0.001 3.999 16 N -0.905 5.905 17 Si 0.902 3.098 18 H -0.288 1.288 19 H -0.290 1.290 20 H -0.280 1.280 21 C 0.144 3.856 22 C -0.121 4.121 23 C -0.123 4.123 24 C 0.113 3.887 25 N -0.355 5.355 26 C 0.072 3.928 27 C -0.278 4.278 28 C 0.046 3.954 29 N -0.295 5.295 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.049 0.951 38 H 0.054 0.946 39 H 0.088 0.912 40 H 0.019 0.981 41 H 0.253 0.747 42 H 0.050 0.950 43 H 0.019 0.981 44 H 0.058 0.942 45 H 0.047 0.953 46 H 0.056 0.944 47 H 0.091 0.909 48 H 0.086 0.914 49 H 0.077 0.923 50 H 0.169 0.831 51 H 0.147 0.853 52 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.757 1.819 21.745 21.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.037 3.963 3 H 0.142 0.858 4 C 0.287 3.713 5 O -0.404 6.404 6 N -0.332 5.332 7 C -0.023 4.023 8 C -0.163 4.163 9 C -0.047 4.047 10 C -0.172 4.172 11 C 0.044 3.956 12 N -0.314 5.314 13 C -0.378 4.378 14 H 0.081 0.919 15 C -0.197 4.197 16 N -0.550 5.550 17 Si 0.732 3.268 18 H -0.215 1.215 19 H -0.216 1.216 20 H -0.205 1.205 21 C 0.017 3.983 22 C -0.160 4.160 23 C -0.161 4.161 24 C -0.009 4.009 25 N -0.137 5.137 26 C -0.073 4.073 27 C -0.307 4.307 28 C -0.140 4.140 29 N -0.115 5.115 30 H 0.099 0.901 31 H 0.112 0.888 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.106 0.894 40 H 0.037 0.963 41 H 0.063 0.937 42 H 0.069 0.931 43 H 0.036 0.964 44 H 0.077 0.923 45 H 0.066 0.934 46 H 0.075 0.925 47 H 0.109 0.891 48 H 0.105 0.895 49 H 0.096 0.904 50 H 0.186 0.814 51 H 0.164 0.836 52 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -2.093 2.202 20.969 21.188 hybrid contribution -0.653 -0.401 -0.538 0.936 sum -2.746 1.801 20.431 20.693 Atomic orbital electron populations 1.22226 0.90439 1.04651 1.04863 1.21094 0.96238 0.97551 0.81440 0.85765 1.20599 0.79906 0.86285 0.84477 1.90745 1.42238 1.21722 1.85701 1.48102 1.60809 1.18471 1.05828 1.22089 0.97402 0.82170 1.00590 1.22107 0.99166 0.98417 0.96636 1.20391 0.96821 0.94404 0.93100 1.22338 0.94839 1.01003 0.99029 1.20823 0.94988 0.91155 0.88593 1.44020 1.13511 1.63217 1.10669 1.19190 1.27812 1.03399 0.87405 0.91858 1.25068 1.02038 0.94924 0.97712 1.69988 1.39574 1.07513 1.37968 0.86277 0.78148 0.78453 0.83881 1.21502 1.21620 1.20501 1.20920 0.89383 0.96264 0.91685 1.22036 0.97725 0.98631 0.97633 1.22014 0.97464 0.95969 1.00618 1.21755 0.99407 0.95711 0.84012 1.48210 1.19806 1.24444 1.21197 1.22412 0.99799 0.90595 0.94539 1.21454 0.99328 1.06425 1.03495 1.23861 0.99072 0.93968 0.97110 1.77359 1.02256 1.24473 1.07415 0.90071 0.88835 0.90770 0.90154 0.90427 0.91936 0.90699 0.93299 0.92709 0.89357 0.96329 0.93696 0.93131 0.96358 0.92325 0.93391 0.92520 0.89093 0.89528 0.90438 0.81380 0.83574 0.80079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.08 8.37 37.16 0.31 -0.77 16 2 C 0.14 1.46 2.87 -69.08 -0.20 1.26 16 3 H 0.12 1.13 7.04 -51.93 -0.37 0.76 16 4 C 0.50 6.71 7.04 -10.98 -0.08 6.64 16 5 O -0.53 -9.29 15.75 5.56 0.09 -9.20 16 6 N -0.60 -7.37 2.97 -172.49 -0.51 -7.88 16 7 C 0.10 0.97 4.75 -3.48 -0.02 0.96 16 8 C -0.13 -1.43 4.92 -26.39 -0.13 -1.56 16 9 C -0.05 -0.69 0.51 -154.42 -0.08 -0.77 16 10 C -0.13 -2.24 4.15 -26.62 -0.11 -2.35 16 11 C 0.17 3.76 4.81 -3.71 -0.02 3.75 16 12 N -0.59 -14.10 3.00 -172.33 -0.52 -14.62 16 13 C -0.25 -6.62 9.60 -15.06 -0.14 -6.77 16 14 H 0.06 1.67 7.86 -52.48 -0.41 1.26 16 15 C 0.00 0.02 5.01 -17.43 -0.09 -0.07 16 16 N -0.91 -25.59 11.00 55.49 0.61 -24.98 16 17 Si 0.90 21.32 29.57 -169.99 -5.03 16.30 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 C 0.14 2.88 6.04 -3.72 -0.02 2.86 16 22 C -0.12 -1.96 4.90 -26.61 -0.13 -2.09 16 23 C -0.12 -1.86 4.15 -26.61 -0.11 -1.97 16 24 C 0.11 1.61 5.96 -3.71 -0.02 1.59 16 25 N -0.35 -4.30 3.08 -56.00 -0.17 -4.47 16 26 C 0.07 0.77 10.46 -17.22 -0.18 0.59 16 27 C -0.28 -2.81 10.80 -40.01 -0.43 -3.24 16 28 C 0.05 0.51 12.03 -17.36 -0.21 0.30 16 29 N -0.29 -4.00 12.58 30.63 0.39 -3.61 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.09 0.49 6.16 -51.93 -0.32 0.17 16 32 H 0.07 0.50 7.49 -51.93 -0.39 0.11 16 33 H 0.08 0.75 6.66 -51.93 -0.35 0.40 16 34 H 0.08 0.54 4.90 -51.93 -0.25 0.29 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.05 0.74 4.98 -51.93 -0.26 0.48 16 38 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.09 2.26 5.97 -51.93 -0.31 1.95 16 40 H 0.02 0.44 6.74 -51.93 -0.35 0.09 16 41 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 42 H 0.05 1.02 7.93 -51.93 -0.41 0.60 16 43 H 0.02 0.38 6.67 -51.93 -0.35 0.03 16 44 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 45 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 47 H 0.09 1.60 4.99 -51.93 -0.26 1.34 16 48 H 0.09 1.36 7.00 -51.93 -0.36 0.99 16 49 H 0.08 1.13 6.74 -51.93 -0.35 0.78 16 50 H 0.17 1.32 7.44 -52.49 -0.39 0.93 16 51 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 52 H 0.18 1.38 8.06 -52.49 -0.42 0.95 16 LS Contribution 385.63 15.07 5.81 5.81 Total: -1.00 -33.35 385.63 -9.06 -42.41 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -8.07 Total: 1.89 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -1.66 Total: -1.64 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: -0.20 Total: -55.57 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.09 Total: -9.20 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.30 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.35 -9.06 -42.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957506895.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.327 kcal (2) G-P(sol) polarization free energy of solvation -33.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds