Wall clock time and date at job start Wed Apr 1 2020 05:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47520 * 2 1 4 4 C 1.50705 * 109.46948 * 240.00289 * 2 1 3 5 5 O 1.21282 * 120.00135 * 249.36619 * 4 2 1 6 6 N 1.34775 * 119.99995 * 69.36485 * 4 2 1 7 7 C 1.46930 * 120.64384 * 3.07406 * 6 4 2 8 8 C 1.53621 * 108.53759 * 126.32888 * 7 6 4 9 9 C 1.53040 * 109.26057 * 54.86737 * 8 7 6 10 10 C 1.53034 * 109.44169 * 58.57611 * 9 8 7 11 11 C 1.53183 * 109.33931 * 181.23072 * 10 9 8 12 12 N 1.46937 * 108.77899 * 305.37408 * 11 10 9 13 13 C 1.36931 * 120.64013 * 233.61471 * 12 11 10 14 14 H 1.08004 * 119.99978 * 151.33465 * 13 12 11 15 15 C 1.38811 * 120.00462 * 331.33243 * 13 12 11 16 16 N 1.31625 * 119.99532 * 346.73432 * 15 13 12 17 17 Si 1.86800 * 120.00457 * 166.73487 * 15 13 12 18 18 H 1.48500 * 109.47296 * 94.94484 * 17 15 13 19 19 H 1.48499 * 109.47133 * 214.94558 * 17 15 13 20 20 H 1.48498 * 109.46803 * 334.94195 * 17 15 13 21 21 C 1.46924 * 118.71568 * 53.63536 * 12 11 10 22 22 C 1.53053 * 109.39233 * 178.59943 * 9 8 7 23 23 C 1.53036 * 109.55082 * 298.56351 * 9 8 7 24 24 C 1.46931 * 120.64465 * 183.36520 * 6 4 2 25 25 N 1.46496 * 109.47210 * 120.00610 * 2 1 3 26 26 C 1.34947 * 126.03689 * 34.99810 * 25 2 1 27 27 C 1.35320 * 107.74789 * 180.02562 * 26 25 2 28 28 C 1.39872 * 107.91567 * 359.97438 * 27 26 25 29 29 N 1.30840 * 108.20480 * 0.27246 * 28 27 26 30 30 H 1.09002 * 109.47037 * 293.70003 * 1 2 3 31 31 H 1.08998 * 109.47500 * 53.69591 * 1 2 3 32 32 H 1.08996 * 109.47557 * 173.69801 * 1 2 3 33 33 H 1.09000 * 109.59233 * 246.15935 * 7 6 4 34 34 H 1.09005 * 109.58426 * 6.59198 * 7 6 4 35 35 H 1.09002 * 109.62964 * 294.87394 * 8 7 6 36 36 H 1.08998 * 109.42740 * 174.74286 * 8 7 6 37 37 H 1.09004 * 109.48928 * 301.19449 * 10 9 8 38 38 H 1.09005 * 109.48817 * 61.27108 * 10 9 8 39 39 H 1.09003 * 109.58915 * 185.58654 * 11 10 9 40 40 H 1.09000 * 109.70428 * 65.22965 * 11 10 9 41 41 H 0.97000 * 119.99612 * 180.02562 * 16 15 13 42 42 H 1.08996 * 109.58563 * 186.56709 * 21 12 11 43 43 H 1.09000 * 109.70090 * 66.21837 * 21 12 11 44 44 H 1.08998 * 109.49617 * 298.69395 * 22 9 8 45 45 H 1.09007 * 109.48931 * 58.78137 * 22 9 8 46 46 H 1.08991 * 109.49099 * 301.34137 * 23 9 8 47 47 H 1.09001 * 109.49010 * 181.25829 * 23 9 8 48 48 H 1.08996 * 109.58584 * 353.39952 * 24 6 4 49 49 H 1.09002 * 109.59032 * 113.68521 * 24 6 4 50 50 H 1.07998 * 126.13111 * 359.96462 * 26 25 2 51 51 H 1.07999 * 126.04611 * 180.02562 * 27 26 25 52 52 H 1.08001 * 125.89395 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 8 2.5833 -1.7858 -1.1275 6 7 1.8690 -0.1506 -2.4456 7 6 1.2641 1.1815 -2.5813 8 6 2.2145 2.0684 -3.3999 9 6 2.5247 1.3812 -4.7317 10 6 1.2208 1.1357 -5.4941 11 6 1.5310 0.4203 -6.8126 12 7 2.5250 1.2073 -7.5553 13 6 2.2876 1.5898 -8.8484 14 1 2.7333 2.4946 -9.2345 15 6 1.4739 0.8146 -9.6633 16 7 1.1437 -0.4049 -9.2945 17 14 0.8477 1.5022 -11.2834 18 1 1.7515 1.0792 -12.3831 19 1 -0.5214 0.9890 -11.5427 20 1 0.8151 2.9852 -11.2120 21 6 3.7788 1.5755 -6.8836 22 6 3.4436 2.2782 -5.5645 23 6 3.2206 0.0440 -4.4680 24 6 2.2868 -0.8632 -3.6608 25 7 2.0183 -0.6907 1.1961 26 6 1.4402 -1.7560 1.7893 27 6 2.1961 -2.0926 2.8600 28 6 3.2734 -1.2027 2.9229 29 7 3.1648 -0.3585 1.9291 30 1 -0.3633 0.4131 0.9410 31 1 -0.3634 0.6084 -0.8281 32 1 -0.3634 -1.0214 -0.1128 33 1 0.3060 1.0973 -3.0942 34 1 1.1152 1.6175 -1.5934 35 1 3.1404 2.2222 -2.8456 36 1 1.7392 3.0309 -3.5892 37 1 0.5580 0.5153 -4.8907 38 1 0.7365 2.0896 -5.7030 39 1 0.6194 0.3317 -7.4036 40 1 1.9309 -0.5726 -6.6067 41 1 0.5755 -0.9468 -9.8641 42 1 4.3509 2.2492 -7.5215 43 1 4.3645 0.6787 -6.6814 44 1 2.9395 3.2219 -5.7729 45 1 4.3629 2.4708 -5.0111 46 1 4.1375 0.2161 -3.9044 47 1 3.4612 -0.4342 -5.4175 48 1 2.8132 -1.7771 -3.3856 49 1 1.4097 -1.1124 -4.2581 50 1 0.5356 -2.2508 1.4678 51 1 2.0024 -2.9052 3.5445 52 1 4.0567 -1.2083 3.6664 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957506895.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:59:51 Heat of formation + Delta-G solvation = 53.650911 kcal Electronic energy + Delta-G solvation = -32057.017064 eV Core-core repulsion = 28058.215424 eV Total energy + Delta-G solvation = -3998.801640 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.38535 -41.56740 -40.04980 -37.43132 -35.82842 -35.05782 -32.99866 -32.25889 -31.52093 -31.01157 -30.40696 -29.45893 -26.89273 -25.99347 -24.65215 -24.39141 -23.57178 -22.50040 -21.99194 -21.59545 -20.39261 -19.33014 -18.70551 -18.28218 -17.91213 -16.94703 -16.84881 -16.47278 -15.86401 -15.75653 -15.43826 -15.27018 -15.23894 -15.14534 -14.95469 -14.65042 -14.47823 -14.42525 -14.20723 -13.73702 -13.56228 -13.40936 -13.24113 -13.08488 -12.92667 -12.87362 -12.80866 -12.62847 -12.53174 -12.24501 -12.19791 -12.00715 -11.75437 -11.68909 -11.64951 -11.26505 -11.08701 -11.02234 -10.91001 -10.48300 -10.35053 -9.67897 -9.50545 -8.59419 -7.84178 -5.31157 0.87042 1.35752 1.44049 1.45762 1.47122 1.56687 1.97845 2.01398 2.51636 3.21064 3.30019 3.50845 3.69573 3.73900 3.80590 3.81728 3.84836 3.97439 4.10520 4.14900 4.24541 4.30100 4.45782 4.55249 4.58108 4.59677 4.61894 4.63584 4.70483 4.73471 4.75335 4.86210 4.86905 4.89413 5.02806 5.04639 5.06146 5.09157 5.14127 5.16598 5.33030 5.36610 5.42146 5.46499 5.56809 5.60287 5.68718 5.75383 5.90538 6.05268 6.30281 6.43090 6.76472 6.95870 7.19118 7.91355 8.41800 9.20611 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.027377 B = 0.002374 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.507351 B =11790.063979 C =11986.854381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.145 3.855 3 H 0.139 0.861 4 C 0.499 3.501 5 O -0.579 6.579 6 N -0.593 5.593 7 C 0.096 3.904 8 C -0.118 4.118 9 C -0.042 4.042 10 C -0.116 4.116 11 C 0.177 3.823 12 N -0.609 5.609 13 C -0.257 4.257 14 H 0.063 0.937 15 C -0.052 4.052 16 N -0.936 5.936 17 Si 0.965 3.035 18 H -0.290 1.290 19 H -0.292 1.292 20 H -0.269 1.269 21 C 0.139 3.861 22 C -0.110 4.110 23 C -0.113 4.113 24 C 0.120 3.880 25 N -0.366 5.366 26 C 0.063 3.937 27 C -0.285 4.285 28 C 0.040 3.960 29 N -0.338 5.338 30 H 0.097 0.903 31 H 0.113 0.887 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.116 0.884 35 H 0.069 0.931 36 H 0.096 0.904 37 H 0.069 0.931 38 H 0.055 0.945 39 H 0.050 0.950 40 H -0.005 1.005 41 H 0.248 0.752 42 H 0.044 0.956 43 H 0.010 0.990 44 H 0.060 0.940 45 H 0.071 0.929 46 H 0.058 0.942 47 H 0.057 0.943 48 H 0.066 0.934 49 H 0.072 0.928 50 H 0.191 0.809 51 H 0.169 0.831 52 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.957 3.859 24.035 24.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.039 3.961 3 H 0.157 0.843 4 C 0.287 3.713 5 O -0.458 6.458 6 N -0.326 5.326 7 C -0.025 4.025 8 C -0.156 4.156 9 C -0.043 4.043 10 C -0.155 4.155 11 C 0.052 3.948 12 N -0.333 5.333 13 C -0.388 4.388 14 H 0.081 0.919 15 C -0.247 4.247 16 N -0.582 5.582 17 Si 0.794 3.206 18 H -0.217 1.217 19 H -0.218 1.218 20 H -0.194 1.194 21 C 0.013 3.987 22 C -0.149 4.149 23 C -0.152 4.152 24 C -0.003 4.003 25 N -0.148 5.148 26 C -0.083 4.083 27 C -0.314 4.314 28 C -0.146 4.146 29 N -0.159 5.159 30 H 0.116 0.884 31 H 0.131 0.869 32 H 0.090 0.910 33 H 0.111 0.889 34 H 0.134 0.866 35 H 0.087 0.913 36 H 0.114 0.886 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.013 0.987 41 H 0.057 0.943 42 H 0.063 0.937 43 H 0.028 0.972 44 H 0.079 0.921 45 H 0.089 0.911 46 H 0.076 0.924 47 H 0.076 0.924 48 H 0.085 0.915 49 H 0.091 0.909 50 H 0.208 0.792 51 H 0.187 0.813 52 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -3.292 4.291 23.279 23.899 hybrid contribution -0.180 -1.105 -1.264 1.689 sum -3.473 3.186 22.015 22.514 Atomic orbital electron populations 1.22280 0.87485 1.05173 1.06600 1.21297 0.98299 0.97265 0.79202 0.84327 1.21278 0.78868 0.85755 0.85441 1.90721 1.44538 1.24116 1.86468 1.48128 1.60359 1.19250 1.04842 1.22375 0.97059 0.80355 1.02725 1.22044 1.00225 0.99115 0.94219 1.20344 0.95071 0.94037 0.94805 1.22104 0.96456 1.00454 0.96455 1.20622 0.92791 0.90860 0.90516 1.44287 1.15235 1.63325 1.10411 1.19501 1.27313 1.03210 0.88730 0.91950 1.25791 1.02805 0.95248 1.00893 1.70161 1.40404 1.08668 1.39013 0.85290 0.77102 0.78222 0.80020 1.21691 1.21849 1.19380 1.21058 0.87938 0.96136 0.93519 1.21905 0.99188 0.98225 0.95609 1.21859 0.97878 0.96334 0.99081 1.21468 0.98760 0.95148 0.84878 1.48414 1.19699 1.25113 1.21584 1.22933 1.00561 0.90284 0.94521 1.21845 0.98916 1.06795 1.03856 1.24410 0.99779 0.93473 0.96950 1.77278 1.03639 1.26208 1.08786 0.88389 0.86866 0.91000 0.88949 0.86630 0.91274 0.88583 0.91228 0.92644 0.93125 0.98689 0.94273 0.93695 0.97246 0.92076 0.91071 0.92352 0.92409 0.91542 0.90947 0.79171 0.81332 0.77662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 8.37 71.98 0.60 -0.89 16 2 C 0.15 2.56 2.87 44.25 0.13 2.69 16 3 H 0.14 2.01 7.04 -2.39 -0.02 1.99 16 4 C 0.50 12.60 7.04 87.66 0.62 13.22 16 5 O -0.58 -20.41 15.75 -3.04 -0.05 -20.46 16 6 N -0.59 -13.43 2.97 -818.04 -2.43 -15.86 16 7 C 0.10 1.47 4.75 86.51 0.41 1.88 16 8 C -0.12 -2.21 4.92 30.82 0.15 -2.06 16 9 C -0.04 -1.16 0.51 -52.13 -0.03 -1.19 16 10 C -0.12 -3.77 4.15 30.67 0.13 -3.64 16 11 C 0.18 8.11 4.81 86.36 0.42 8.52 16 12 N -0.61 -29.73 3.00 -699.11 -2.09 -31.83 16 13 C -0.26 -13.98 9.60 84.03 0.81 -13.17 16 14 H 0.06 3.33 7.86 -2.91 -0.02 3.31 16 15 C -0.05 -2.90 5.01 84.86 0.43 -2.48 16 16 N -0.94 -54.87 11.00 21.65 0.24 -54.63 16 17 Si 0.97 44.59 29.57 68.60 2.03 46.62 16 18 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 19 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 20 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 21 C 0.14 5.63 6.04 86.36 0.52 6.15 16 22 C -0.11 -3.38 4.90 30.67 0.15 -3.23 16 23 C -0.11 -3.43 4.15 30.67 0.13 -3.30 16 24 C 0.12 3.44 5.96 86.36 0.52 3.96 16 25 N -0.37 -8.24 3.08 -331.07 -1.02 -9.26 16 26 C 0.06 1.21 10.46 83.54 0.87 2.09 16 27 C -0.29 -5.28 10.80 21.99 0.24 -5.04 16 28 C 0.04 0.82 12.03 85.24 1.02 1.85 16 29 N -0.34 -8.78 12.58 -57.02 -0.72 -9.50 16 30 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.11 0.63 6.16 -2.39 -0.01 0.61 16 32 H 0.07 0.75 7.49 -2.39 -0.02 0.73 16 33 H 0.09 1.28 6.66 -2.39 -0.02 1.27 16 34 H 0.12 0.98 4.90 -2.38 -0.01 0.97 16 35 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.07 1.97 4.98 -2.39 -0.01 1.96 16 38 H 0.05 1.82 8.14 -2.38 -0.02 1.81 16 39 H 0.05 2.69 5.97 -2.39 -0.01 2.68 16 40 H 0.00 -0.24 6.74 -2.39 -0.02 -0.26 16 41 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 42 H 0.04 1.82 7.93 -2.39 -0.02 1.80 16 43 H 0.01 0.41 6.67 -2.39 -0.02 0.39 16 44 H 0.06 1.87 8.14 -2.39 -0.02 1.86 16 45 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 46 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.06 2.14 4.99 -2.39 -0.01 2.13 16 48 H 0.07 2.18 7.00 -2.39 -0.02 2.16 16 49 H 0.07 2.14 6.74 -2.39 -0.02 2.12 16 50 H 0.19 2.58 7.44 -2.91 -0.02 2.56 16 51 H 0.17 2.16 8.06 -2.91 -0.02 2.14 16 52 H 0.21 2.80 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -76.80 385.63 3.99 -72.81 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: 0.92 Total: 16.76 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: 7.11 Total: 5.35 kcal Atomic # 7 Polarization: -115.05 SS G_CDS: -6.02 Total: -121.07 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.05 Total: -20.46 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -76.80 3.99 -72.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957506895.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.457 kcal (2) G-P(sol) polarization free energy of solvation -76.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds