Wall clock time and date at job start Wed Apr 1 2020 04:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47147 * 2 1 4 4 N 1.46496 * 109.46984 * 120.00493 * 2 1 3 5 5 C 1.34777 * 119.99613 * 274.99541 * 4 2 1 6 6 O 1.21574 * 120.00324 * 0.02562 * 5 4 2 7 7 C 1.47716 * 120.00135 * 180.02562 * 5 4 2 8 8 C 1.41501 * 126.52076 * 179.71522 * 7 5 4 9 9 C 1.35361 * 105.50065 * 179.89774 * 8 7 5 10 10 C 1.50698 * 126.38436 * 180.09483 * 9 8 7 11 11 C 1.52998 * 109.47715 * 265.28719 * 10 9 8 12 12 C 1.53000 * 109.47335 * 179.97438 * 11 10 9 13 13 C 1.52994 * 109.47122 * 59.99940 * 12 11 10 14 14 C 1.52995 * 109.47386 * 300.00069 * 13 12 11 15 15 C 1.53000 * 109.47047 * 59.99885 * 14 13 12 16 16 N 1.35032 * 107.23122 * 0.35917 * 9 8 7 17 17 H 0.97004 * 124.88770 * 179.77708 * 16 9 8 18 18 N 1.28465 * 110.23310 * 359.76228 * 16 9 8 19 19 C 1.53006 * 109.46981 * 240.00157 * 2 1 3 20 20 C 1.53943 * 113.74034 * 158.73879 * 19 2 1 21 21 N 1.47807 * 86.03813 * 222.08515 * 20 19 2 22 22 C 1.36936 * 134.45407 * 204.64265 * 21 20 19 23 23 H 1.08001 * 119.99548 * 179.86650 * 22 21 20 24 24 C 1.38810 * 120.00324 * 359.86959 * 22 21 20 25 25 N 1.31618 * 119.99976 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 120.00055 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47261 * 359.97438 * 26 24 22 28 28 H 1.48495 * 109.47051 * 120.00140 * 26 24 22 29 29 H 1.48502 * 109.46793 * 240.00132 * 26 24 22 30 30 C 1.47576 * 91.04839 * 24.55295 * 21 20 19 31 31 H 1.09005 * 109.46965 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47107 * 299.99651 * 1 2 3 33 33 H 1.09002 * 109.47097 * 59.99895 * 1 2 3 34 34 H 0.96996 * 120.00516 * 95.00526 * 4 2 1 35 35 H 1.07997 * 127.24633 * 0.03179 * 8 7 5 36 36 H 1.09003 * 109.47270 * 25.29216 * 10 9 8 37 37 H 1.08999 * 109.46710 * 300.00379 * 11 10 9 38 38 H 1.09005 * 109.46779 * 59.99875 * 11 10 9 39 39 H 1.09001 * 109.47142 * 299.99818 * 12 11 10 40 40 H 1.09006 * 109.46757 * 180.02562 * 12 11 10 41 41 H 1.08999 * 109.47257 * 179.97438 * 13 12 11 42 42 H 1.09005 * 109.46835 * 60.00237 * 13 12 11 43 43 H 1.09001 * 109.46824 * 300.00089 * 14 13 12 44 44 H 1.08998 * 109.47414 * 179.97438 * 14 13 12 45 45 H 1.09006 * 109.46757 * 180.02562 * 15 14 13 46 46 H 1.09001 * 109.47142 * 60.00399 * 15 14 13 47 47 H 1.08995 * 112.94717 * 290.33288 * 19 2 1 48 48 H 1.09002 * 113.76988 * 336.35028 * 20 19 2 49 49 H 1.09001 * 113.76795 * 107.74078 * 20 19 2 50 50 H 0.96996 * 120.00077 * 179.97438 * 25 24 22 51 51 H 1.09004 * 113.76297 * 221.15187 * 30 21 20 52 52 H 1.08997 * 113.87298 * 89.77040 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8576 1.1612 2.4118 7 6 2.6400 -0.7145 3.5630 8 6 2.8326 -0.1456 4.8442 9 6 3.2897 -1.1540 5.6229 10 6 3.6475 -1.0636 7.0839 11 6 5.1491 -0.8071 7.2265 12 6 5.5122 -0.7147 8.7100 13 6 5.1508 -2.0282 9.4062 14 6 3.6493 -2.2847 9.2637 15 6 3.2862 -2.3772 7.7803 16 7 3.3710 -2.2548 4.8449 17 1 3.6738 -3.1258 5.1460 18 7 2.9893 -1.9826 3.6489 19 6 2.0400 -0.7212 -1.2493 20 6 3.4848 -0.3520 -1.6318 21 7 2.9978 -0.3176 -3.0269 22 6 3.5875 -0.4755 -4.2526 23 1 2.9927 -0.4035 -5.1513 24 6 4.9496 -0.7281 -4.3402 25 7 5.6745 -0.8154 -3.2451 26 14 5.7539 -0.9443 -6.0124 27 1 4.7285 -0.8015 -7.0770 28 1 6.8040 0.0898 -6.1939 29 1 6.3682 -2.2937 -6.0953 30 6 1.6214 -0.0471 -2.5684 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 2.2491 -1.6318 1.1525 35 1 2.6509 0.8773 5.1392 36 1 3.0938 -0.2449 7.5436 37 1 5.7027 -1.6258 6.7669 38 1 5.4064 0.1290 6.7308 39 1 4.9585 0.1043 9.1692 40 1 6.5819 -0.5315 8.8114 41 1 5.4098 -1.9625 10.4630 42 1 5.7045 -2.8471 8.9470 43 1 3.0956 -1.4657 9.7230 44 1 3.3919 -3.2207 9.7594 45 1 2.2163 -2.5595 7.6788 46 1 3.8399 -3.1961 7.3211 47 1 1.8529 -1.7948 -1.2264 48 1 3.8047 0.6191 -1.2540 49 1 4.2071 -1.1447 -1.4367 50 1 6.6262 -0.9923 -3.3063 51 1 0.8587 -0.5968 -3.1200 52 1 1.3909 1.0133 -2.4661 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969853324.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:33 Heat of formation + Delta-G solvation = 39.445429 kcal Electronic energy + Delta-G solvation = -29963.348675 eV Core-core repulsion = 25963.931039 eV Total energy + Delta-G solvation = -3999.417636 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -43.77559 -40.88045 -39.59047 -39.25995 -36.19023 -34.22939 -33.66226 -33.01981 -31.71282 -31.50667 -29.69434 -29.33975 -26.72497 -25.83284 -25.13350 -24.01634 -23.45983 -22.54599 -22.07563 -21.35807 -20.77918 -20.18166 -18.78219 -18.70661 -17.89447 -17.31468 -16.91759 -16.80532 -16.08081 -15.76749 -15.70302 -15.48019 -15.21741 -15.03201 -14.96697 -14.78250 -14.62723 -14.55084 -14.08173 -13.47170 -13.40658 -13.26239 -13.13361 -13.08462 -13.07658 -12.91335 -12.70815 -12.53275 -12.36430 -12.03368 -11.97672 -11.82141 -11.74461 -11.52234 -11.37568 -11.30757 -11.18459 -11.10765 -11.01955 -10.87997 -10.47352 -10.00898 -9.93298 -8.92370 -7.90590 -5.24511 0.51673 1.10098 1.44192 1.45911 1.56251 1.85164 2.23270 2.38634 2.46935 3.29508 3.33899 3.40992 3.47538 3.71943 3.76697 3.86003 3.94236 4.12418 4.21234 4.30299 4.31537 4.35285 4.49976 4.53355 4.58045 4.59018 4.59815 4.60716 4.74611 4.75050 4.78446 4.83748 4.87477 5.02027 5.04107 5.10311 5.15358 5.21022 5.25728 5.25829 5.27722 5.30434 5.34723 5.40335 5.44472 5.47146 5.55673 5.57644 5.66233 5.92991 6.07071 6.48934 6.87178 6.91099 7.18852 7.60568 8.56755 9.26604 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015572 B = 0.001975 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.621025 B =14172.476458 C =15382.470944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.158 3.842 3 H 0.064 0.936 4 N -0.699 5.699 5 C 0.599 3.401 6 O -0.572 6.572 7 C -0.033 4.033 8 C -0.197 4.197 9 C 0.044 3.956 10 C -0.011 4.011 11 C -0.112 4.112 12 C -0.117 4.117 13 C -0.122 4.122 14 C -0.115 4.115 15 C -0.117 4.117 16 N -0.361 5.361 17 H 0.457 0.543 18 N -0.266 5.266 19 C -0.110 4.110 20 C 0.167 3.833 21 N -0.644 5.644 22 C -0.232 4.232 23 H 0.087 0.913 24 C -0.073 4.073 25 N -0.956 5.956 26 Si 0.981 3.019 27 H -0.262 1.262 28 H -0.295 1.295 29 H -0.291 1.291 30 C 0.132 3.868 31 H 0.072 0.928 32 H 0.051 0.949 33 H 0.079 0.921 34 H 0.412 0.588 35 H 0.162 0.838 36 H 0.105 0.895 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.068 0.932 44 H 0.072 0.928 45 H 0.069 0.931 46 H 0.069 0.931 47 H 0.102 0.898 48 H 0.003 0.997 49 H 0.039 0.961 50 H 0.247 0.753 51 H 0.067 0.933 52 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.523 -5.680 29.438 30.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.053 3.947 3 H 0.082 0.918 4 N -0.349 5.349 5 C 0.385 3.615 6 O -0.450 6.450 7 C -0.192 4.192 8 C -0.225 4.225 9 C -0.083 4.083 10 C -0.031 4.031 11 C -0.150 4.150 12 C -0.155 4.155 13 C -0.159 4.159 14 C -0.153 4.153 15 C -0.155 4.155 16 N -0.078 5.078 17 H 0.305 0.695 18 N -0.103 5.103 19 C -0.130 4.130 20 C 0.042 3.958 21 N -0.371 5.371 22 C -0.361 4.361 23 H 0.105 0.895 24 C -0.266 4.266 25 N -0.606 5.606 26 Si 0.809 3.191 27 H -0.186 1.186 28 H -0.222 1.222 29 H -0.218 1.218 30 C 0.007 3.993 31 H 0.091 0.909 32 H 0.070 0.930 33 H 0.098 0.902 34 H 0.248 0.752 35 H 0.179 0.821 36 H 0.123 0.877 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.086 0.914 44 H 0.091 0.909 45 H 0.088 0.912 46 H 0.087 0.913 47 H 0.120 0.880 48 H 0.021 0.979 49 H 0.057 0.943 50 H 0.056 0.944 51 H 0.085 0.915 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.446 -5.836 28.533 29.829 hybrid contribution 1.211 0.130 -0.582 1.350 sum -5.235 -5.706 27.951 29.004 Atomic orbital electron populations 1.22052 0.92975 1.03113 1.02542 1.20936 0.95361 0.95896 0.82500 0.91754 1.45887 1.65664 1.14615 1.08740 1.17197 0.76767 0.85382 0.82184 1.90744 1.52595 1.16345 1.85267 1.21797 1.09676 0.91667 0.96075 1.21655 1.08149 1.01344 0.91324 1.21654 1.03672 0.86644 0.96333 1.19921 0.97463 1.00908 0.84829 1.21603 0.93743 1.01998 0.97694 1.21524 1.01480 0.98414 0.94054 1.21571 0.96209 0.97343 1.00780 1.21496 0.96205 1.02577 0.95005 1.21640 1.01730 0.95622 0.96511 1.43333 1.46745 1.12732 1.04977 0.69472 1.73523 1.16145 1.16781 1.03882 1.23443 0.96317 1.00469 0.92774 1.22162 0.94007 0.96375 0.83278 1.46433 1.05914 1.82830 1.01885 1.19521 0.91939 1.40190 0.84422 0.89525 1.25695 0.96849 1.03099 1.00930 1.70042 1.05780 1.56900 1.27851 0.84969 0.78206 0.76736 0.79182 1.18639 1.22220 1.21753 1.22680 0.87604 0.97680 0.91319 0.90915 0.92992 0.90232 0.75226 0.82062 0.87701 0.92043 0.92249 0.91280 0.91606 0.91298 0.91986 0.91352 0.90939 0.91222 0.91281 0.87978 0.97870 0.94275 0.94410 0.91485 0.93562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.93 9.31 71.98 0.67 -3.26 16 2 C 0.16 5.18 2.38 45.00 0.11 5.28 16 3 H 0.06 2.46 7.41 -2.39 -0.02 2.44 16 4 N -0.70 -22.02 5.07 -445.52 -2.26 -24.28 16 5 C 0.60 20.34 7.79 86.75 0.68 21.02 16 6 O -0.57 -22.68 16.59 -3.95 -0.07 -22.75 16 7 C -0.03 -0.94 7.13 42.46 0.30 -0.64 16 8 C -0.20 -4.71 10.73 22.41 0.24 -4.47 16 9 C 0.04 0.74 5.92 41.40 0.25 0.99 16 10 C -0.01 -0.12 2.59 -11.54 -0.03 -0.15 16 11 C -0.11 -1.20 5.19 30.59 0.16 -1.04 16 12 C -0.12 -0.94 5.92 30.59 0.18 -0.76 16 13 C -0.12 -0.78 5.92 30.59 0.18 -0.60 16 14 C -0.12 -0.67 5.92 30.59 0.18 -0.49 16 15 C -0.12 -0.82 4.96 30.59 0.15 -0.67 16 16 N -0.36 -6.18 6.64 -47.93 -0.32 -6.50 16 17 H 0.46 4.56 8.14 -219.99 -1.79 2.76 16 18 N -0.27 -6.61 11.92 -48.17 -0.57 -7.19 16 19 C -0.11 -4.09 3.47 -10.13 -0.04 -4.13 16 20 C 0.17 8.38 7.08 86.44 0.61 9.00 16 21 N -0.64 -34.19 3.70 -716.18 -2.65 -36.84 16 22 C -0.23 -13.43 10.70 84.03 0.90 -12.53 16 23 H 0.09 4.74 7.83 -2.91 -0.02 4.72 16 24 C -0.07 -4.32 5.50 84.86 0.47 -3.85 16 25 N -0.96 -60.04 11.39 21.65 0.25 -59.80 16 26 Si 0.98 47.02 29.55 68.60 2.03 49.05 16 27 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 28 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 29 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 30 C 0.13 5.30 7.64 86.49 0.66 5.96 16 31 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 32 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.08 1.93 7.52 -2.39 -0.02 1.91 16 34 H 0.41 11.88 8.33 -92.71 -0.77 11.11 16 35 H 0.16 3.70 8.06 -2.91 -0.02 3.68 16 36 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 39 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 41 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 42 H 0.06 0.41 8.14 -2.38 -0.02 0.39 16 43 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 44 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 45 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 46 H 0.07 0.37 7.44 -2.39 -0.02 0.35 16 47 H 0.10 3.55 8.14 -2.39 -0.02 3.53 16 48 H 0.00 0.19 7.99 -2.39 -0.02 0.17 16 49 H 0.04 2.19 7.17 -2.39 -0.02 2.17 16 50 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 51 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 52 H 0.05 1.79 8.10 -2.39 -0.02 1.77 16 Total: -1.00 -76.93 414.62 0.43 -76.50 By element: Atomic # 1 Polarization: 23.76 SS G_CDS: -1.64 Total: 22.11 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: 5.67 Total: 9.68 kcal Atomic # 7 Polarization: -129.04 SS G_CDS: -5.56 Total: -134.60 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.07 Total: -22.75 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.05 kcal Total: -76.93 0.43 -76.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969853324.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.946 kcal (2) G-P(sol) polarization free energy of solvation -76.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds