Wall clock time and date at job start Wed Apr 1 2020 04:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47192 * 2 1 4 4 N 1.46506 * 109.46904 * 119.99422 * 2 1 3 5 5 C 1.34774 * 120.00088 * 275.00402 * 4 2 1 6 6 O 1.21607 * 119.99799 * 0.02562 * 5 4 2 7 7 C 1.47431 * 120.00161 * 179.97438 * 5 4 2 8 8 C 1.41293 * 126.41140 * 359.68926 * 7 5 4 9 9 N 1.30442 * 108.01963 * 179.87927 * 8 7 5 10 10 N 1.39937 * 108.89876 * 0.38053 * 9 8 7 11 11 C 1.46499 * 125.75218 * 179.73414 * 10 9 8 12 12 C 1.53001 * 109.47364 * 305.02229 * 11 10 9 13 13 C 1.54270 * 110.03240 * 292.17222 * 12 11 10 14 14 C 1.54893 * 104.19218 * 217.10176 * 13 12 11 15 15 C 1.54882 * 102.75155 * 37.94437 * 14 13 12 16 16 C 1.53869 * 110.03351 * 175.00198 * 12 11 10 17 17 C 1.34257 * 108.48969 * 359.75572 * 10 9 8 18 18 C 1.52993 * 109.47533 * 239.99680 * 2 1 3 19 19 C 1.53496 * 114.20739 * 64.99799 * 18 2 1 20 20 N 1.47072 * 87.98567 * 220.15001 * 19 18 2 21 21 C 1.36937 * 136.05332 * 207.08694 * 20 19 18 22 22 H 1.07997 * 120.00158 * 6.93140 * 21 20 19 23 23 C 1.38817 * 119.99553 * 187.20881 * 21 20 19 24 24 N 1.31616 * 119.99860 * 7.22414 * 23 21 20 25 25 Si 1.86795 * 119.99761 * 187.21912 * 23 21 20 26 26 H 1.48503 * 109.46942 * 94.80854 * 25 23 21 27 27 H 1.48496 * 109.47262 * 214.80527 * 25 23 21 28 28 H 1.48500 * 109.47536 * 334.80644 * 25 23 21 29 29 C 1.47065 * 87.88565 * 27.34515 * 20 19 18 30 30 H 1.08999 * 109.46606 * 60.00841 * 1 2 3 31 31 H 1.09000 * 109.47192 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47625 * 300.00827 * 1 2 3 33 33 H 0.97001 * 119.99808 * 95.00061 * 4 2 1 34 34 H 1.08004 * 125.98850 * 359.97438 * 8 7 5 35 35 H 1.08994 * 109.47422 * 65.02450 * 11 10 9 36 36 H 1.09006 * 109.46888 * 185.02984 * 11 10 9 37 37 H 1.09004 * 110.01257 * 53.61027 * 12 11 10 38 38 H 1.09002 * 110.48727 * 335.78121 * 13 12 11 39 39 H 1.09004 * 110.48255 * 98.42412 * 13 12 11 40 40 H 1.09002 * 110.75429 * 279.62531 * 14 13 12 41 41 H 1.08998 * 110.90898 * 156.33444 * 14 13 12 42 42 H 1.08991 * 110.48658 * 203.38104 * 15 14 13 43 43 H 1.08999 * 110.48696 * 80.73034 * 15 14 13 44 44 H 1.09000 * 110.03345 * 238.57035 * 16 12 11 45 45 H 1.09000 * 110.03315 * 359.95541 * 16 12 11 46 46 H 1.08001 * 126.28838 * 180.02562 * 17 10 9 47 47 H 1.09002 * 113.28272 * 198.07298 * 18 2 1 48 48 H 1.09006 * 113.46317 * 105.36826 * 19 18 2 49 49 H 1.08994 * 113.52296 * 334.94163 * 19 18 2 50 50 H 0.97000 * 119.99499 * 179.97438 * 24 23 21 51 51 H 1.09000 * 113.46924 * 87.43676 * 29 20 19 52 52 H 1.08994 * 113.46604 * 217.87963 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1470 -0.0181 2.3572 6 8 1.8572 1.1617 2.4118 7 6 2.6378 -0.7131 3.5612 8 6 3.0045 -2.0745 3.6528 9 7 3.3874 -2.3078 4.8778 10 7 3.2773 -1.1264 5.6198 11 6 3.6056 -0.9735 7.0393 12 6 2.8238 -2.0031 7.8575 13 6 1.3171 -1.6739 7.8202 14 6 0.8156 -2.0284 9.2421 15 6 1.9898 -1.5713 10.1426 16 6 3.2516 -1.9378 9.3341 17 6 2.8195 -0.1571 4.8115 18 6 2.0401 -0.7213 -1.2491 19 6 1.6921 -0.0179 -2.5683 20 7 1.4192 -1.3438 -3.1432 21 6 1.4519 -1.9022 -4.3931 22 1 1.8439 -1.3381 -5.2264 23 6 0.9758 -3.1912 -4.5900 24 7 0.3645 -3.8236 -3.6109 25 14 1.2028 -4.0281 -6.2445 26 1 2.4309 -4.8624 -6.2128 27 1 0.0269 -4.8889 -6.5293 28 1 1.3313 -2.9983 -7.3067 29 6 1.0896 -1.8042 -1.7859 30 1 -0.3632 0.5137 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 2.2490 -1.6317 1.1528 34 1 2.9746 -2.7953 2.8490 35 1 4.6745 -1.1303 7.1839 36 1 3.3379 0.0308 7.3679 37 1 2.9980 -3.0039 7.4622 38 1 1.1630 -0.6147 7.6143 39 1 0.8113 -2.2862 7.0735 40 1 0.6509 -3.1017 9.3372 41 1 -0.0933 -1.4769 9.4828 42 1 1.9750 -2.1085 11.0908 43 1 1.9444 -0.4954 10.3118 44 1 3.6325 -2.9071 9.6557 45 1 4.0168 -1.1731 9.4677 46 1 2.6290 0.8692 5.0886 47 1 3.0811 -1.0347 -1.1707 48 1 2.5414 0.4880 -3.0276 49 1 0.8086 0.6171 -2.5028 50 1 0.0315 -4.7242 -3.7487 51 1 0.0470 -1.6406 -1.5132 52 1 1.4256 -2.8202 -1.5787 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970651535.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:42 Heat of formation + Delta-G solvation = 83.947954 kcal Electronic energy + Delta-G solvation = -29807.534772 eV Core-core repulsion = 25810.046911 eV Total energy + Delta-G solvation = -3997.487861 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.56680 -39.52123 -38.75781 -38.05924 -34.61829 -33.85354 -32.21517 -30.77509 -30.45821 -29.32982 -29.05700 -27.27094 -25.65541 -24.76085 -24.37805 -22.92011 -21.59513 -21.14018 -20.91173 -20.28962 -19.63633 -18.68734 -17.84062 -16.75786 -16.45935 -15.91597 -15.84511 -15.62274 -15.44584 -14.88878 -14.59099 -14.42917 -14.39237 -13.88857 -13.81855 -13.73500 -13.48011 -12.99998 -12.80041 -12.72313 -12.33450 -11.91992 -11.78414 -11.65111 -11.62930 -11.52279 -11.45263 -11.39567 -11.25895 -11.10011 -10.97415 -10.86806 -10.79206 -10.55492 -10.37370 -9.98873 -9.74743 -9.67058 -9.63476 -9.16783 -8.90990 -8.72436 -8.59810 -6.82669 -5.77279 -3.06914 1.43520 2.08635 2.12043 3.40133 3.45026 3.47233 3.49839 3.60682 3.95687 4.03193 4.10220 4.38009 4.47433 4.57113 4.69885 4.74808 4.77545 4.93902 5.06011 5.07815 5.15710 5.17289 5.22448 5.23803 5.30693 5.33954 5.41011 5.42175 5.48228 5.60216 5.63313 5.66201 5.73562 5.77976 5.82146 5.87082 5.91119 6.13107 6.20673 6.25837 6.34698 6.47166 6.60763 6.61888 6.72868 6.77255 6.90823 7.19804 7.37574 7.40910 7.54565 7.84485 7.99027 8.51759 9.05579 9.71732 10.67848 11.41641 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019965 B = 0.001798 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.136553 B =15570.912894 C =16162.669607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.160 3.840 3 H 0.082 0.918 4 N -0.714 5.714 5 C 0.593 3.407 6 O -0.558 6.558 7 C -0.288 4.288 8 C 0.082 3.918 9 N -0.295 5.295 10 N -0.359 5.359 11 C 0.137 3.863 12 C -0.106 4.106 13 C -0.119 4.119 14 C -0.125 4.125 15 C -0.125 4.125 16 C -0.118 4.118 17 C 0.123 3.877 18 C -0.157 4.157 19 C 0.126 3.874 20 N -0.610 5.610 21 C -0.217 4.217 22 H 0.081 0.919 23 C -0.008 4.008 24 N -0.919 5.919 25 Si 0.912 3.088 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.280 1.280 29 C 0.162 3.838 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.050 0.950 33 H 0.399 0.601 34 H 0.191 0.809 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.067 0.933 46 H 0.185 0.815 47 H 0.092 0.908 48 H 0.039 0.961 49 H 0.036 0.964 50 H 0.253 0.747 51 H 0.043 0.957 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.259 5.454 28.684 29.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.055 3.945 3 H 0.101 0.899 4 N -0.364 5.364 5 C 0.380 3.620 6 O -0.438 6.438 7 C -0.303 4.303 8 C -0.106 4.106 9 N -0.115 5.115 10 N -0.138 5.138 11 C 0.016 3.984 12 C -0.125 4.125 13 C -0.156 4.156 14 C -0.163 4.163 15 C -0.163 4.163 16 C -0.156 4.156 17 C -0.028 4.028 18 C -0.177 4.177 19 C -0.001 4.001 20 N -0.335 5.335 21 C -0.345 4.345 22 H 0.099 0.901 23 C -0.205 4.205 24 N -0.566 5.566 25 Si 0.742 3.258 26 H -0.216 1.216 27 H -0.218 1.218 28 H -0.206 1.206 29 C 0.037 3.963 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.234 0.766 34 H 0.207 0.793 35 H 0.106 0.894 36 H 0.117 0.883 37 H 0.108 0.892 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.086 0.914 46 H 0.201 0.799 47 H 0.110 0.890 48 H 0.057 0.943 49 H 0.053 0.947 50 H 0.063 0.937 51 H 0.060 0.940 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.480 5.163 29.391 30.340 hybrid contribution -0.226 -0.388 -1.550 1.614 sum 5.254 4.775 27.841 28.732 Atomic orbital electron populations 1.22289 0.95391 1.02726 1.01671 1.20846 0.94013 0.96735 0.82922 0.89946 1.45913 1.66916 1.14061 1.09483 1.17233 0.76789 0.85822 0.82114 1.90743 1.52071 1.15735 1.85264 1.20336 1.19560 0.95061 0.95386 1.24139 0.96128 0.95332 0.94997 1.77140 1.24568 1.04992 1.04756 1.48537 1.48935 1.06928 1.09416 1.22049 1.00803 1.00864 0.74675 1.22119 0.95342 0.99962 0.95040 1.22419 0.94383 1.01413 0.97399 1.22497 0.97913 1.01293 0.94593 1.22369 0.94435 1.01133 0.98331 1.22150 0.98055 1.02158 0.93243 1.22928 0.94656 0.95366 0.89845 1.23692 1.00916 1.00748 0.92382 1.22384 0.97328 0.90275 0.90103 1.45624 1.78983 1.05477 1.03437 1.18960 1.34473 0.96848 0.84188 0.90149 1.24816 0.99929 0.97817 0.97931 1.69851 1.42232 1.13044 1.31471 0.86104 0.77210 0.79423 0.83057 1.21597 1.21753 1.20578 1.22277 0.94910 0.95644 0.83514 0.91416 0.91416 0.93093 0.76634 0.79263 0.89384 0.88338 0.89181 0.91636 0.91493 0.91410 0.91443 0.91542 0.91531 0.91178 0.91427 0.79851 0.89007 0.94263 0.94687 0.93698 0.93978 0.92679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.58 8.22 37.16 0.31 -2.28 16 2 C 0.16 2.50 2.76 -67.93 -0.19 2.32 16 3 H 0.08 1.35 7.58 -51.93 -0.39 0.96 16 4 N -0.71 -9.93 5.07 -54.88 -0.28 -10.21 16 5 C 0.59 8.64 7.78 -12.52 -0.10 8.54 16 6 O -0.56 -9.82 16.56 5.27 0.09 -9.73 16 7 C -0.29 -3.49 6.13 -105.07 -0.64 -4.13 16 8 C 0.08 0.90 11.50 -16.98 -0.20 0.71 16 9 N -0.29 -3.33 12.23 30.86 0.38 -2.95 16 10 N -0.36 -3.32 3.47 -60.81 -0.21 -3.53 16 11 C 0.14 0.81 5.54 -4.04 -0.02 0.79 16 12 C -0.11 -0.64 3.03 -89.50 -0.27 -0.91 16 13 C -0.12 -0.79 6.19 -25.07 -0.16 -0.94 16 14 C -0.13 -0.70 6.91 -24.74 -0.17 -0.87 16 15 C -0.13 -0.56 6.83 -25.07 -0.17 -0.73 16 16 C -0.12 -0.52 6.46 -25.61 -0.17 -0.69 16 17 C 0.12 1.25 11.25 -16.56 -0.19 1.06 16 18 C -0.16 -2.83 4.14 -89.97 -0.37 -3.20 16 19 C 0.13 2.57 8.10 -8.50 -0.07 2.51 16 20 N -0.61 -15.59 3.76 -184.57 -0.69 -16.29 16 21 C -0.22 -6.12 10.73 -15.06 -0.16 -6.29 16 22 H 0.08 2.19 7.84 -52.49 -0.41 1.78 16 23 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 24 N -0.92 -27.23 11.86 55.49 0.66 -26.57 16 25 Si 0.91 22.18 29.56 -169.99 -5.02 17.16 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 28 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 29 C 0.16 3.65 6.35 -8.36 -0.05 3.59 16 30 H 0.07 1.09 6.77 -51.93 -0.35 0.74 16 31 H 0.07 1.11 6.33 -51.93 -0.33 0.78 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.40 4.86 7.56 -40.82 -0.31 4.55 16 34 H 0.19 1.65 7.50 -52.48 -0.39 1.26 16 35 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.10 0.37 7.92 -51.93 -0.41 -0.04 16 37 H 0.09 0.71 8.03 -51.93 -0.42 0.29 16 38 H 0.06 0.43 7.76 -51.93 -0.40 0.02 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.07 0.23 7.67 -51.93 -0.40 -0.17 16 46 H 0.18 1.48 8.06 -52.49 -0.42 1.06 16 47 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 48 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 49 H 0.04 0.70 6.75 -51.93 -0.35 0.35 16 50 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 51 H 0.04 0.97 5.45 -51.93 -0.28 0.69 16 52 H 0.05 1.36 7.63 -51.93 -0.40 0.96 16 LS Contribution 413.81 15.07 6.24 6.24 Total: -1.00 -34.35 413.81 -10.19 -44.54 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -8.63 Total: 2.20 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -2.71 Total: -0.86 kcal Atomic # 7 Polarization: -59.40 SS G_CDS: -0.15 Total: -59.55 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.09 Total: -9.73 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -34.35 -10.19 -44.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970651535.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.487 kcal (2) G-P(sol) polarization free energy of solvation -34.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds