Wall clock time and date at job start Wed Apr 1 2020 04:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47192 * 2 1 4 4 N 1.46506 * 109.46904 * 119.99422 * 2 1 3 5 5 C 1.34774 * 120.00088 * 275.00402 * 4 2 1 6 6 O 1.21607 * 119.99799 * 0.02562 * 5 4 2 7 7 C 1.47431 * 120.00161 * 179.97438 * 5 4 2 8 8 C 1.41293 * 126.41140 * 359.68926 * 7 5 4 9 9 N 1.30442 * 108.01963 * 179.87927 * 8 7 5 10 10 N 1.39937 * 108.89876 * 0.38053 * 9 8 7 11 11 C 1.46499 * 125.75218 * 179.73414 * 10 9 8 12 12 C 1.53001 * 109.47364 * 305.02229 * 11 10 9 13 13 C 1.54270 * 110.03240 * 292.17222 * 12 11 10 14 14 C 1.54893 * 104.19218 * 217.10176 * 13 12 11 15 15 C 1.54882 * 102.75155 * 37.94437 * 14 13 12 16 16 C 1.53869 * 110.03351 * 175.00198 * 12 11 10 17 17 C 1.34257 * 108.48969 * 359.75572 * 10 9 8 18 18 C 1.52993 * 109.47533 * 239.99680 * 2 1 3 19 19 C 1.53496 * 114.20739 * 64.99799 * 18 2 1 20 20 N 1.47072 * 87.98567 * 220.15001 * 19 18 2 21 21 C 1.36937 * 136.05332 * 207.08694 * 20 19 18 22 22 H 1.07997 * 120.00158 * 6.93140 * 21 20 19 23 23 C 1.38817 * 119.99553 * 187.20881 * 21 20 19 24 24 N 1.31616 * 119.99860 * 7.22414 * 23 21 20 25 25 Si 1.86795 * 119.99761 * 187.21912 * 23 21 20 26 26 H 1.48503 * 109.46942 * 94.80854 * 25 23 21 27 27 H 1.48496 * 109.47262 * 214.80527 * 25 23 21 28 28 H 1.48500 * 109.47536 * 334.80644 * 25 23 21 29 29 C 1.47065 * 87.88565 * 27.34515 * 20 19 18 30 30 H 1.08999 * 109.46606 * 60.00841 * 1 2 3 31 31 H 1.09000 * 109.47192 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47625 * 300.00827 * 1 2 3 33 33 H 0.97001 * 119.99808 * 95.00061 * 4 2 1 34 34 H 1.08004 * 125.98850 * 359.97438 * 8 7 5 35 35 H 1.08994 * 109.47422 * 65.02450 * 11 10 9 36 36 H 1.09006 * 109.46888 * 185.02984 * 11 10 9 37 37 H 1.09004 * 110.01257 * 53.61027 * 12 11 10 38 38 H 1.09002 * 110.48727 * 335.78121 * 13 12 11 39 39 H 1.09004 * 110.48255 * 98.42412 * 13 12 11 40 40 H 1.09002 * 110.75429 * 279.62531 * 14 13 12 41 41 H 1.08998 * 110.90898 * 156.33444 * 14 13 12 42 42 H 1.08991 * 110.48658 * 203.38104 * 15 14 13 43 43 H 1.08999 * 110.48696 * 80.73034 * 15 14 13 44 44 H 1.09000 * 110.03345 * 238.57035 * 16 12 11 45 45 H 1.09000 * 110.03315 * 359.95541 * 16 12 11 46 46 H 1.08001 * 126.28838 * 180.02562 * 17 10 9 47 47 H 1.09002 * 113.28272 * 198.07298 * 18 2 1 48 48 H 1.09006 * 113.46317 * 105.36826 * 19 18 2 49 49 H 1.08994 * 113.52296 * 334.94163 * 19 18 2 50 50 H 0.97000 * 119.99499 * 179.97438 * 24 23 21 51 51 H 1.09000 * 113.46924 * 87.43676 * 29 20 19 52 52 H 1.08994 * 113.46604 * 217.87963 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1470 -0.0181 2.3572 6 8 1.8572 1.1617 2.4118 7 6 2.6378 -0.7131 3.5612 8 6 3.0045 -2.0745 3.6528 9 7 3.3874 -2.3078 4.8778 10 7 3.2773 -1.1264 5.6198 11 6 3.6056 -0.9735 7.0393 12 6 2.8238 -2.0031 7.8575 13 6 1.3171 -1.6739 7.8202 14 6 0.8156 -2.0284 9.2421 15 6 1.9898 -1.5713 10.1426 16 6 3.2516 -1.9378 9.3341 17 6 2.8195 -0.1571 4.8115 18 6 2.0401 -0.7213 -1.2491 19 6 1.6921 -0.0179 -2.5683 20 7 1.4192 -1.3438 -3.1432 21 6 1.4519 -1.9022 -4.3931 22 1 1.8439 -1.3381 -5.2264 23 6 0.9758 -3.1912 -4.5900 24 7 0.3645 -3.8236 -3.6109 25 14 1.2028 -4.0281 -6.2445 26 1 2.4309 -4.8624 -6.2128 27 1 0.0269 -4.8889 -6.5293 28 1 1.3313 -2.9983 -7.3067 29 6 1.0896 -1.8042 -1.7859 30 1 -0.3632 0.5137 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 2.2490 -1.6317 1.1528 34 1 2.9746 -2.7953 2.8490 35 1 4.6745 -1.1303 7.1839 36 1 3.3379 0.0308 7.3679 37 1 2.9980 -3.0039 7.4622 38 1 1.1630 -0.6147 7.6143 39 1 0.8113 -2.2862 7.0735 40 1 0.6509 -3.1017 9.3372 41 1 -0.0933 -1.4769 9.4828 42 1 1.9750 -2.1085 11.0908 43 1 1.9444 -0.4954 10.3118 44 1 3.6325 -2.9071 9.6557 45 1 4.0168 -1.1731 9.4677 46 1 2.6290 0.8692 5.0886 47 1 3.0811 -1.0347 -1.1707 48 1 2.5414 0.4880 -3.0276 49 1 0.8086 0.6171 -2.5028 50 1 0.0315 -4.7242 -3.7487 51 1 0.0470 -1.6406 -1.5132 52 1 1.4256 -2.8202 -1.5787 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970651535.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:39 Heat of formation + Delta-G solvation = 63.265280 kcal Electronic energy + Delta-G solvation = -29808.431641 eV Core-core repulsion = 25810.046911 eV Total energy + Delta-G solvation = -3998.384730 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.37802 -40.87078 -39.64522 -39.13411 -36.02706 -34.55861 -34.11507 -32.00667 -31.28539 -30.16042 -29.56374 -29.07272 -26.60197 -26.28333 -25.83620 -24.15855 -22.80341 -21.96838 -21.53096 -21.11043 -20.44377 -20.04810 -18.85712 -18.65649 -17.36167 -17.12815 -16.80791 -16.57741 -16.38029 -16.04159 -15.91127 -15.62449 -15.54057 -15.15508 -14.94608 -14.35659 -14.31431 -14.22181 -13.93582 -13.78839 -13.54733 -13.31083 -13.27152 -13.01396 -12.78696 -12.64818 -12.25875 -12.19242 -12.08327 -12.04329 -12.02497 -11.96336 -11.93373 -11.79370 -11.57641 -11.47052 -11.30581 -10.99748 -10.81383 -10.72381 -10.51078 -10.05002 -9.56771 -8.85586 -7.91096 -5.21379 0.59742 1.21101 1.42244 1.46835 1.48424 1.57316 2.36566 2.49248 2.55636 3.32585 3.38779 3.48523 3.58968 3.65081 3.73285 3.79079 3.87774 4.07819 4.16863 4.19817 4.26517 4.29545 4.35154 4.46553 4.47631 4.51840 4.59415 4.62101 4.71490 4.74337 4.80347 4.81464 4.84334 4.86351 4.98521 5.03099 5.06093 5.08917 5.10914 5.23009 5.25346 5.27171 5.38984 5.41310 5.45210 5.46705 5.51646 5.65516 5.72462 5.92695 5.95360 6.55023 6.74409 6.93725 7.38775 7.61709 8.64876 9.27990 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019965 B = 0.001798 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.136553 B =15570.912894 C =16162.669607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.171 3.829 3 H 0.085 0.915 4 N -0.710 5.710 5 C 0.596 3.404 6 O -0.591 6.591 7 C -0.313 4.313 8 C 0.081 3.919 9 N -0.316 5.316 10 N -0.351 5.351 11 C 0.128 3.872 12 C -0.100 4.100 13 C -0.119 4.119 14 C -0.127 4.127 15 C -0.122 4.122 16 C -0.113 4.113 17 C 0.134 3.866 18 C -0.121 4.121 19 C 0.123 3.877 20 N -0.643 5.643 21 C -0.230 4.230 22 H 0.083 0.917 23 C -0.066 4.066 24 N -0.951 5.951 25 Si 0.978 3.022 26 H -0.287 1.287 27 H -0.295 1.295 28 H -0.268 1.268 29 C 0.163 3.837 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.408 0.592 34 H 0.204 0.796 35 H 0.101 0.899 36 H 0.127 0.873 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.041 0.959 40 H 0.060 0.940 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.068 0.932 45 H 0.085 0.915 46 H 0.206 0.794 47 H 0.099 0.901 48 H 0.051 0.949 49 H 0.047 0.953 50 H 0.248 0.752 51 H 0.037 0.963 52 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.443 6.649 30.130 31.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.066 3.934 3 H 0.103 0.897 4 N -0.360 5.360 5 C 0.386 3.614 6 O -0.473 6.473 7 C -0.328 4.328 8 C -0.107 4.107 9 N -0.136 5.136 10 N -0.129 5.129 11 C 0.009 3.991 12 C -0.119 4.119 13 C -0.156 4.156 14 C -0.164 4.164 15 C -0.159 4.159 16 C -0.151 4.151 17 C -0.019 4.019 18 C -0.141 4.141 19 C -0.002 4.002 20 N -0.369 5.369 21 C -0.358 4.358 22 H 0.101 0.899 23 C -0.260 4.260 24 N -0.600 5.600 25 Si 0.806 3.194 26 H -0.214 1.214 27 H -0.222 1.222 28 H -0.192 1.192 29 C 0.038 3.962 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.244 0.756 34 H 0.221 0.779 35 H 0.119 0.881 36 H 0.145 0.855 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.060 0.940 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.094 0.906 44 H 0.087 0.913 45 H 0.104 0.896 46 H 0.223 0.777 47 H 0.117 0.883 48 H 0.070 0.930 49 H 0.065 0.935 50 H 0.057 0.943 51 H 0.054 0.946 52 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 6.692 6.359 30.867 32.217 hybrid contribution -0.599 -0.719 -1.904 2.122 sum 6.093 5.640 28.962 30.129 Atomic orbital electron populations 1.22199 0.95446 1.02071 1.01653 1.20589 0.93782 0.96471 0.82561 0.89736 1.45798 1.66776 1.14448 1.08974 1.17489 0.75993 0.85401 0.82551 1.90720 1.53694 1.17107 1.85776 1.20211 1.21710 0.95632 0.95279 1.24384 0.95628 0.95295 0.95379 1.77113 1.25227 1.06275 1.05032 1.48805 1.47659 1.06074 1.10346 1.22435 1.01587 1.02346 0.72737 1.22029 0.94911 0.98785 0.96203 1.22397 0.94789 1.01112 0.97346 1.22504 0.98683 1.00975 0.94285 1.22369 0.93609 1.01764 0.98195 1.22132 0.98489 1.02815 0.91702 1.23271 0.93149 0.96228 0.89292 1.23340 1.00103 0.98040 0.92581 1.22557 0.98127 0.88839 0.90703 1.45998 1.79202 1.08126 1.03550 1.19346 1.33662 0.97253 0.85535 0.89887 1.25640 1.00303 0.98582 1.01451 1.70019 1.43586 1.13023 1.33374 0.85063 0.76680 0.78287 0.79326 1.21361 1.22197 1.19222 1.22241 0.95539 0.95406 0.83027 0.91761 0.92353 0.92718 0.75616 0.77928 0.88105 0.85487 0.91473 0.91162 0.94039 0.92114 0.91204 0.90986 0.90584 0.91277 0.89601 0.77700 0.88313 0.93040 0.93521 0.94272 0.94585 0.95557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.85 8.22 71.98 0.59 -4.26 16 2 C 0.17 5.20 2.76 44.99 0.12 5.32 16 3 H 0.08 2.63 7.58 -2.39 -0.02 2.62 16 4 N -0.71 -19.14 5.07 -445.79 -2.26 -21.40 16 5 C 0.60 16.81 7.78 86.67 0.67 17.48 16 6 O -0.59 -20.16 16.56 -4.05 -0.07 -20.23 16 7 C -0.31 -7.25 6.13 -20.15 -0.12 -7.37 16 8 C 0.08 1.72 11.50 85.65 0.99 2.70 16 9 N -0.32 -6.89 12.23 -56.27 -0.69 -7.58 16 10 N -0.35 -5.91 3.47 -346.31 -1.20 -7.11 16 11 C 0.13 1.21 5.54 86.38 0.48 1.69 16 12 C -0.10 -1.07 3.03 -10.07 -0.03 -1.11 16 13 C -0.12 -1.49 6.19 31.67 0.20 -1.30 16 14 C -0.13 -1.30 6.91 31.88 0.22 -1.08 16 15 C -0.12 -0.84 6.83 31.67 0.22 -0.62 16 16 C -0.11 -0.76 6.46 31.32 0.20 -0.56 16 17 C 0.13 2.47 11.25 84.27 0.95 3.41 16 18 C -0.12 -4.25 4.14 -10.37 -0.04 -4.29 16 19 C 0.12 4.92 8.10 83.18 0.67 5.60 16 20 N -0.64 -32.99 3.76 -737.86 -2.78 -35.76 16 21 C -0.23 -13.00 10.73 84.03 0.90 -12.10 16 22 H 0.08 4.51 7.84 -2.91 -0.02 4.48 16 23 C -0.07 -3.81 5.49 84.86 0.47 -3.35 16 24 N -0.95 -57.55 11.86 21.65 0.26 -57.29 16 25 Si 0.98 45.97 29.56 68.60 2.03 48.00 16 26 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 27 H -0.30 -13.95 7.11 99.48 0.71 -13.25 16 28 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 29 C 0.16 7.44 6.35 83.27 0.53 7.97 16 30 H 0.06 2.03 6.77 -2.39 -0.02 2.02 16 31 H 0.06 1.92 6.33 -2.39 -0.02 1.91 16 32 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.41 9.66 7.56 -92.71 -0.70 8.95 16 34 H 0.20 3.45 7.50 -2.91 -0.02 3.42 16 35 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.13 0.51 7.92 -2.38 -0.02 0.49 16 37 H 0.07 1.05 8.03 -2.38 -0.02 1.03 16 38 H 0.07 0.81 7.76 -2.39 -0.02 0.79 16 39 H 0.04 0.72 8.14 -2.38 -0.02 0.70 16 40 H 0.06 0.69 8.14 -2.39 -0.02 0.68 16 41 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 43 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 44 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 45 H 0.09 0.29 7.67 -2.39 -0.02 0.27 16 46 H 0.21 2.78 8.06 -2.91 -0.02 2.76 16 47 H 0.10 3.38 8.14 -2.39 -0.02 3.36 16 48 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 49 H 0.05 1.79 6.75 -2.39 -0.02 1.77 16 50 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 51 H 0.04 1.70 5.45 -2.39 -0.01 1.68 16 52 H 0.03 1.33 7.63 -2.39 -0.02 1.31 16 Total: -1.00 -74.42 413.81 2.52 -71.90 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: 0.22 Total: 21.33 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: 7.01 Total: 8.14 kcal Atomic # 7 Polarization: -122.47 SS G_CDS: -6.67 Total: -129.14 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: -0.07 Total: -20.23 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -74.42 2.52 -71.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970651535.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.164 kcal (2) G-P(sol) polarization free energy of solvation -74.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds