Wall clock time and date at job start Wed Apr 1 2020 04:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47457 * 2 1 4 4 N 1.46502 * 109.47054 * 240.00104 * 2 1 3 5 5 C 1.34776 * 119.99824 * 85.00094 * 4 2 1 6 6 O 1.21600 * 120.00154 * 359.72561 * 5 4 2 7 7 C 1.47430 * 120.00028 * 179.97438 * 5 4 2 8 8 C 1.41287 * 126.41306 * 359.75117 * 7 5 4 9 9 N 1.30444 * 108.02300 * 179.97438 * 8 7 5 10 10 N 1.39933 * 108.89884 * 0.02562 * 9 8 7 11 11 C 1.46502 * 125.75625 * 179.97438 * 10 9 8 12 12 C 1.53003 * 109.46974 * 215.02236 * 11 10 9 13 13 C 1.53000 * 109.46934 * 179.97438 * 12 11 10 14 14 C 1.53008 * 109.46850 * 60.00457 * 13 12 11 15 15 C 1.52998 * 109.46669 * 299.99471 * 14 13 12 16 16 C 1.52995 * 109.47096 * 95.02188 * 11 10 9 17 17 C 1.34258 * 108.49082 * 359.74511 * 10 9 8 18 18 C 1.52999 * 109.47171 * 120.00320 * 2 1 3 19 19 C 1.53942 * 113.74242 * 282.19733 * 18 2 1 20 20 N 1.47812 * 86.03652 * 222.08571 * 19 18 2 21 21 C 1.36944 * 134.45346 * 204.64280 * 20 19 18 22 22 H 1.07999 * 119.99474 * 182.57708 * 21 20 19 23 23 C 1.38807 * 119.99971 * 2.58725 * 21 20 19 24 24 N 1.31623 * 120.00339 * 353.40861 * 23 21 20 25 25 Si 1.86800 * 119.99972 * 173.41493 * 23 21 20 26 26 H 1.48498 * 109.47625 * 94.96728 * 25 23 21 27 27 H 1.48498 * 109.47451 * 214.97196 * 25 23 21 28 28 H 1.48510 * 109.46960 * 334.96726 * 25 23 21 29 29 C 1.47569 * 91.05352 * 24.54772 * 20 19 18 30 30 H 1.09007 * 109.46882 * 304.48763 * 1 2 3 31 31 H 1.09001 * 109.47390 * 64.48430 * 1 2 3 32 32 H 1.09003 * 109.47150 * 184.48613 * 1 2 3 33 33 H 0.96996 * 120.00056 * 265.00119 * 4 2 1 34 34 H 1.08005 * 125.99100 * 0.02562 * 8 7 5 35 35 H 1.08992 * 109.46981 * 335.01989 * 11 10 9 36 36 H 1.09000 * 109.46955 * 300.00021 * 12 11 10 37 37 H 1.09003 * 109.47189 * 59.99822 * 12 11 10 38 38 H 1.08992 * 109.47368 * 299.99965 * 13 12 11 39 39 H 1.09001 * 109.47055 * 179.97438 * 13 12 11 40 40 H 1.08992 * 109.46689 * 179.97438 * 14 13 12 41 41 H 1.09000 * 109.47331 * 59.99351 * 14 13 12 42 42 H 1.08989 * 109.47619 * 299.99945 * 15 14 13 43 43 H 1.09002 * 109.46862 * 179.97438 * 15 14 13 44 44 H 1.08993 * 109.47454 * 299.99969 * 16 11 10 45 45 H 1.09005 * 109.47202 * 60.00247 * 16 11 10 46 46 H 1.08003 * 126.29656 * 180.24441 * 17 10 9 47 47 H 1.08999 * 112.94371 * 53.78843 * 18 2 1 48 48 H 1.09005 * 113.76904 * 336.34857 * 19 18 2 49 49 H 1.09005 * 113.77262 * 107.74455 * 19 18 2 50 50 H 0.97001 * 119.99872 * 180.02562 * 24 23 21 51 51 H 1.09000 * 113.77316 * 221.15625 * 29 20 19 52 52 H 1.08998 * 113.87207 * 89.76572 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3571 6 8 1.8531 1.1604 -2.4129 7 6 2.6389 -0.7130 -3.5608 8 6 3.0171 -2.0714 -3.6494 9 7 3.3940 -2.3063 -4.8759 10 7 3.2774 -1.1267 -5.6196 11 6 3.6036 -0.9743 -7.0397 12 6 4.1836 0.4205 -7.2829 13 6 4.5248 0.5794 -8.7659 14 6 3.2565 0.4014 -9.6030 15 6 2.6766 -0.9934 -9.3597 16 6 2.3351 -1.1522 -7.8763 17 6 2.8114 -0.1594 -4.8136 18 6 2.0400 -0.7213 1.2492 19 6 1.9659 0.1296 2.5299 20 7 3.3033 -0.4147 2.8461 21 6 4.0103 -0.6100 4.0025 22 1 5.0167 -0.9998 3.9607 23 6 3.4336 -0.3072 5.2282 24 7 2.2602 0.2874 5.2746 25 14 4.3227 -0.7433 6.8121 26 1 5.0969 0.4323 7.2852 27 1 3.3302 -1.1311 7.8464 28 1 5.2481 -1.8781 6.5640 29 6 3.5693 -0.6652 1.4164 30 1 -0.3633 0.5819 0.8471 31 1 -0.3634 0.4427 -0.9274 32 1 -0.3633 -1.0245 0.0804 33 1 2.2489 -1.6317 -1.1527 34 1 2.9968 -2.7898 -2.8431 35 1 4.3369 -1.7278 -7.3269 36 1 3.4503 1.1740 -6.9956 37 1 5.0874 0.5472 -6.6869 38 1 5.2583 -0.1741 -9.0528 39 1 4.9376 1.5732 -8.9393 40 1 3.4995 0.5151 -10.6594 41 1 2.5230 1.1549 -9.3160 42 1 3.4099 -1.7469 -9.6466 43 1 1.7728 -1.1200 -9.9557 44 1 1.9219 -2.1458 -7.7031 45 1 1.6017 -0.3986 -7.5891 46 1 2.6105 0.8642 -5.0933 47 1 1.6225 -1.7218 1.3623 48 1 1.9614 1.2037 2.3441 49 1 1.1863 -0.1866 3.2231 50 1 1.8574 0.4994 6.1311 51 1 4.0676 -1.6150 1.2220 52 1 4.0371 0.1737 0.9011 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970708493.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:35 Heat of formation + Delta-G solvation = 72.333238 kcal Electronic energy + Delta-G solvation = -29989.983342 eV Core-core repulsion = 25991.991829 eV Total energy + Delta-G solvation = -3997.991513 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.69647 -39.49082 -38.74550 -37.78276 -34.66158 -33.54388 -32.10657 -31.49046 -30.87258 -30.11441 -28.98347 -27.41495 -24.93478 -24.32431 -23.69386 -23.34295 -22.61946 -21.19860 -20.98717 -20.11490 -19.81659 -19.11488 -17.94369 -16.76847 -16.32237 -15.85622 -15.67625 -15.29218 -15.08403 -14.78942 -14.71507 -14.64767 -14.39326 -13.93818 -13.80738 -13.47844 -13.40845 -13.11524 -12.96393 -12.91856 -12.79485 -12.22590 -11.98283 -11.94596 -11.79137 -11.50137 -11.35763 -11.27175 -11.22634 -11.18321 -11.02065 -10.85863 -10.84463 -10.59927 -10.30540 -9.96567 -9.76005 -9.75702 -9.54986 -9.36498 -8.92097 -8.70843 -8.59461 -6.82952 -5.72997 -3.03487 1.42357 2.02477 2.08657 3.41840 3.46803 3.48041 3.49209 3.60637 3.88995 4.05239 4.22915 4.37087 4.45453 4.49519 4.55850 4.60828 4.74208 4.78179 4.81824 4.96486 5.05808 5.11169 5.20258 5.26584 5.27348 5.40522 5.41878 5.46795 5.47508 5.48137 5.57837 5.60175 5.62673 5.66030 5.75989 5.78422 5.91234 6.09331 6.16269 6.24221 6.38253 6.44698 6.53743 6.62307 6.68194 6.72197 6.92676 7.27716 7.36435 7.43843 7.60547 7.83183 8.02888 8.52361 9.09286 9.75707 10.65816 11.44746 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.025766 B = 0.001783 C = 0.001744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.436485 B =15700.468839 C =16052.517638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.153 3.847 3 H 0.087 0.913 4 N -0.715 5.715 5 C 0.593 3.407 6 O -0.555 6.555 7 C -0.288 4.288 8 C 0.081 3.919 9 N -0.299 5.299 10 N -0.357 5.357 11 C 0.161 3.839 12 C -0.133 4.133 13 C -0.114 4.114 14 C -0.125 4.125 15 C -0.116 4.116 16 C -0.131 4.131 17 C 0.125 3.875 18 C -0.146 4.146 19 C 0.176 3.824 20 N -0.613 5.613 21 C -0.222 4.222 22 H 0.079 0.921 23 C -0.008 4.008 24 N -0.921 5.921 25 Si 0.910 3.090 26 H -0.290 1.290 27 H -0.290 1.290 28 H -0.281 1.281 29 C 0.126 3.874 30 H 0.068 0.932 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.396 0.604 34 H 0.190 0.810 35 H 0.105 0.895 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.071 0.929 46 H 0.183 0.817 47 H 0.088 0.912 48 H 0.028 0.972 49 H 0.073 0.927 50 H 0.253 0.747 51 H 0.040 0.960 52 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.614 -2.966 -31.730 31.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.048 3.952 3 H 0.105 0.895 4 N -0.364 5.364 5 C 0.380 3.620 6 O -0.434 6.434 7 C -0.303 4.303 8 C -0.107 4.107 9 N -0.118 5.118 10 N -0.136 5.136 11 C 0.060 3.940 12 C -0.172 4.172 13 C -0.152 4.152 14 C -0.163 4.163 15 C -0.154 4.154 16 C -0.169 4.169 17 C -0.026 4.026 18 C -0.166 4.166 19 C 0.050 3.950 20 N -0.339 5.339 21 C -0.350 4.350 22 H 0.096 0.904 23 C -0.205 4.205 24 N -0.568 5.568 25 Si 0.741 3.259 26 H -0.217 1.217 27 H -0.216 1.216 28 H -0.206 1.206 29 C 0.000 4.000 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.230 0.770 34 H 0.207 0.793 35 H 0.123 0.877 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.089 0.911 44 H 0.092 0.908 45 H 0.090 0.910 46 H 0.200 0.800 47 H 0.106 0.894 48 H 0.046 0.954 49 H 0.091 0.909 50 H 0.063 0.937 51 H 0.059 0.941 52 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -0.286 -3.012 -32.341 32.482 hybrid contribution 0.327 0.031 1.594 1.627 sum 0.041 -2.981 -30.747 30.891 Atomic orbital electron populations 1.22108 0.95562 1.01821 1.02045 1.21077 0.93687 0.97429 0.82972 0.89494 1.45889 1.67111 1.13858 1.09527 1.17219 0.76872 0.85829 0.82088 1.90754 1.51749 1.15731 1.85212 1.20357 1.19459 0.95185 0.95304 1.24092 0.96306 0.95348 0.94906 1.77162 1.24707 1.05161 1.04775 1.48718 1.48637 1.06963 1.09275 1.21433 0.98245 0.99547 0.74819 1.21988 1.02016 0.94958 0.98237 1.21488 0.97995 1.02707 0.93025 1.21620 0.97356 0.97197 1.00112 1.21513 1.01509 0.97542 0.94798 1.22005 0.96507 1.03320 0.95113 1.22852 0.94388 0.95589 0.89778 1.23828 0.97574 1.00673 0.94556 1.22232 0.89565 0.93964 0.89269 1.46047 1.16101 1.72065 0.99674 1.19031 0.96861 1.36477 0.82603 0.90355 1.24771 0.97315 1.00985 0.97401 1.69828 1.17226 1.45633 1.24135 0.86130 0.78386 0.78010 0.83415 1.21744 1.21611 1.20615 1.22525 0.93159 0.97671 0.86658 0.91266 0.92841 0.92790 0.76993 0.79334 0.87687 0.90554 0.90523 0.91374 0.90814 0.91378 0.91534 0.91432 0.91070 0.90797 0.91013 0.79965 0.89359 0.95400 0.90895 0.93685 0.94140 0.95017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 9.43 37.16 0.35 -1.92 16 2 C 0.15 2.42 2.28 -67.93 -0.16 2.26 16 3 H 0.09 1.59 7.49 -51.93 -0.39 1.20 16 4 N -0.71 -9.68 4.94 -54.88 -0.27 -9.95 16 5 C 0.59 8.72 7.78 -12.52 -0.10 8.62 16 6 O -0.56 -10.05 16.56 5.28 0.09 -9.96 16 7 C -0.29 -3.52 6.13 -105.07 -0.64 -4.16 16 8 C 0.08 0.88 11.50 -16.98 -0.20 0.68 16 9 N -0.30 -3.43 12.50 30.86 0.39 -3.04 16 10 N -0.36 -3.47 3.49 -54.31 -0.19 -3.66 16 11 C 0.16 1.07 3.18 -67.93 -0.22 0.85 16 12 C -0.13 -0.70 4.84 -26.73 -0.13 -0.83 16 13 C -0.11 -0.43 5.92 -26.73 -0.16 -0.59 16 14 C -0.13 -0.45 5.92 -26.73 -0.16 -0.61 16 15 C -0.12 -0.46 5.92 -26.71 -0.16 -0.62 16 16 C -0.13 -0.75 5.53 -26.71 -0.15 -0.89 16 17 C 0.13 1.33 10.39 -16.56 -0.17 1.15 16 18 C -0.15 -2.65 3.35 -89.69 -0.30 -2.95 16 19 C 0.18 4.12 7.02 -2.84 -0.02 4.10 16 20 N -0.61 -15.93 3.70 -177.72 -0.66 -16.59 16 21 C -0.22 -6.34 10.69 -15.06 -0.16 -6.50 16 22 H 0.08 2.16 7.84 -52.49 -0.41 1.75 16 23 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 24 N -0.92 -27.60 11.43 55.49 0.63 -26.97 16 25 Si 0.91 22.40 29.56 -169.99 -5.02 17.38 16 26 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 27 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 28 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 29 C 0.13 2.59 8.38 -2.97 -0.02 2.56 16 30 H 0.07 1.02 8.14 -51.92 -0.42 0.60 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.40 4.39 7.56 -40.82 -0.31 4.08 16 34 H 0.19 1.49 7.50 -52.48 -0.39 1.10 16 35 H 0.11 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.39 7.13 -51.93 -0.37 0.02 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 41 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 42 H 0.07 0.25 8.14 -51.94 -0.42 -0.17 16 43 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 44 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.18 1.63 7.24 -52.48 -0.38 1.25 16 47 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 48 H 0.03 0.68 8.04 -51.93 -0.42 0.26 16 49 H 0.07 1.87 7.20 -51.93 -0.37 1.50 16 50 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 51 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 52 H 0.03 0.67 8.10 -51.93 -0.42 0.25 16 LS Contribution 415.83 15.07 6.27 6.27 Total: -1.00 -34.87 415.83 -10.19 -45.07 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -8.94 Total: 0.64 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: -2.48 Total: 0.82 kcal Atomic # 7 Polarization: -60.11 SS G_CDS: -0.10 Total: -60.21 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.09 Total: -9.96 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -34.87 -10.19 -45.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970708493.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.401 kcal (2) G-P(sol) polarization free energy of solvation -34.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds