Wall clock time and date at job start Wed Apr 1 2020 04:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47218 * 2 1 4 4 N 1.46504 * 109.46818 * 120.00150 * 2 1 3 5 5 N 1.39936 * 125.74862 * 300.02277 * 4 2 1 6 6 C 1.30446 * 108.89591 * 179.97438 * 5 4 2 7 7 C 1.41295 * 108.02321 * 0.02562 * 6 5 4 8 8 C 1.47424 * 126.41705 * 179.97438 * 7 6 5 9 9 O 1.21607 * 120.00059 * 185.44421 * 8 7 6 10 10 N 1.34777 * 119.99939 * 5.44941 * 8 7 6 11 11 C 1.46505 * 120.00087 * 179.97438 * 10 8 7 12 12 H 1.09005 * 109.46949 * 325.00321 * 11 10 8 13 13 C 1.53000 * 109.46833 * 84.99595 * 11 10 8 14 14 C 1.52993 * 109.47230 * 204.99866 * 11 10 8 15 15 C 1.53496 * 114.20947 * 180.02562 * 14 11 10 16 16 N 1.47064 * 87.98803 * 220.34533 * 15 14 11 17 17 C 1.36939 * 136.05736 * 207.08015 * 16 15 14 18 18 H 1.08002 * 119.99545 * 353.53429 * 17 16 15 19 19 C 1.38803 * 119.99714 * 173.52524 * 17 16 15 20 20 N 1.31624 * 119.99642 * 177.52098 * 19 17 16 21 21 Si 1.86803 * 120.00393 * 357.52108 * 19 17 16 22 22 H 1.48503 * 109.47139 * 175.81850 * 21 19 17 23 23 H 1.48503 * 109.46675 * 295.81399 * 21 19 17 24 24 H 1.48494 * 109.47057 * 55.81311 * 21 19 17 25 25 C 1.47069 * 87.88320 * 27.34051 * 16 15 14 26 26 C 1.34257 * 125.75744 * 120.27265 * 4 2 1 27 27 C 1.50702 * 126.29022 * 0.03186 * 26 4 2 28 28 C 1.53002 * 117.49519 * 312.07274 * 27 26 4 29 29 C 1.53006 * 117.49587 * 243.41464 * 27 26 4 30 30 H 1.08995 * 109.47172 * 300.00171 * 1 2 3 31 31 H 1.09001 * 109.46591 * 60.00554 * 1 2 3 32 32 H 1.09001 * 109.47127 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47076 * 239.99657 * 2 1 3 34 34 H 1.08994 * 109.46822 * 179.97438 * 3 2 1 35 35 H 1.09006 * 109.46601 * 299.99662 * 3 2 1 36 36 H 1.08995 * 109.47188 * 59.99839 * 3 2 1 37 37 H 1.08000 * 125.99425 * 179.97438 * 6 5 4 38 38 H 0.96995 * 120.00135 * 0.02562 * 10 8 7 39 39 H 1.09006 * 109.46862 * 180.02562 * 13 11 10 40 40 H 1.09002 * 109.47641 * 300.00221 * 13 11 10 41 41 H 1.08997 * 109.47359 * 60.00731 * 13 11 10 42 42 H 1.09006 * 113.41633 * 313.19869 * 14 11 10 43 43 H 1.08996 * 113.47056 * 105.55793 * 15 14 11 44 44 H 1.09004 * 113.51726 * 335.13288 * 15 14 11 45 45 H 0.96998 * 120.00459 * 354.98227 * 20 19 17 46 46 H 1.09001 * 113.46729 * 87.44190 * 25 16 15 47 47 H 1.08999 * 113.46346 * 217.87725 * 25 16 15 48 48 H 1.08995 * 115.55203 * 97.74304 * 27 26 4 49 49 H 1.08995 * 117.50079 * 0.02562 * 28 27 26 50 50 H 1.09004 * 117.49300 * 145.02085 * 28 27 26 51 51 H 1.08998 * 117.49757 * 214.97373 * 29 27 26 52 52 H 1.08997 * 117.49958 * 0.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 7 1.7550 -0.3192 2.5194 6 6 2.3491 -1.1601 3.3204 7 6 3.0253 -2.1150 2.5284 8 6 3.8280 -3.2496 3.0203 9 8 4.4430 -3.9451 2.2348 10 7 3.8801 -3.5160 4.3404 11 6 4.6773 -4.6438 4.8292 12 1 4.6336 -5.4595 4.1074 13 6 6.1304 -4.2006 5.0103 14 6 4.1181 -5.1199 6.1713 15 6 4.8774 -6.3044 6.7850 16 7 3.5774 -6.8632 7.1856 17 6 3.1235 -7.6912 8.1775 18 1 3.8257 -8.1753 8.8401 19 6 1.7612 -7.9080 8.3312 20 7 1.3274 -8.7416 9.2528 21 14 0.5434 -7.0169 7.2301 22 1 -0.8317 -7.4940 7.5249 23 1 0.6251 -5.5558 7.4826 24 1 0.8686 -7.2924 5.8076 25 6 2.9804 -6.1468 6.0484 26 6 2.7976 -1.7838 1.2078 27 6 3.3248 -2.5163 0.0008 28 6 2.3302 -2.8503 -1.1129 29 6 2.8650 -3.9610 -0.2053 30 1 -0.3633 0.5138 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9562 -0.8901 36 1 1.6767 1.9563 0.8899 37 1 2.3285 -1.1311 4.3998 38 1 3.3892 -2.9616 4.9668 39 1 6.7237 -5.0398 5.3736 40 1 6.5288 -3.8614 4.0541 41 1 6.1742 -3.3850 5.7321 42 1 3.9182 -4.3075 6.8700 43 1 5.5086 -6.0254 7.6286 44 1 5.4029 -6.9126 6.0487 45 1 1.9600 -9.2590 9.7754 46 1 3.0054 -6.7129 5.1173 47 1 1.9953 -5.7334 6.2647 48 1 4.3440 -2.2657 -0.2931 49 1 1.2948 -2.5399 -0.9728 50 1 2.6954 -2.8198 -2.1395 51 1 3.5816 -4.6607 -0.6353 52 1 2.1809 -4.3815 0.5318 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970709900.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:14 Heat of formation + Delta-G solvation = 123.058093 kcal Electronic energy + Delta-G solvation = -31108.166435 eV Core-core repulsion = 27112.374517 eV Total energy + Delta-G solvation = -3995.791919 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.81805 -39.58543 -38.30670 -37.31982 -35.95074 -34.82020 -32.40386 -31.20117 -30.80543 -29.49073 -27.79208 -27.69715 -25.46116 -24.52487 -23.58703 -23.36939 -22.47089 -22.18645 -20.84275 -20.01182 -19.52428 -19.08291 -17.58365 -17.44888 -16.49355 -16.29062 -15.83245 -15.37062 -15.22191 -15.00432 -14.73231 -14.52843 -14.22246 -13.87354 -13.74821 -13.57442 -13.25967 -13.10653 -12.87322 -12.69038 -12.67073 -12.28405 -12.18089 -11.96195 -11.86345 -11.82451 -11.75622 -11.72700 -11.42241 -11.22736 -10.92854 -10.79189 -10.57026 -10.49762 -10.48414 -10.18333 -9.64211 -9.59960 -9.14336 -9.04145 -8.90151 -8.87136 -8.62014 -7.11489 -6.28497 -3.20572 1.35696 2.00527 2.06913 3.35580 3.43332 3.44862 3.47451 3.56041 3.68808 3.99913 4.05700 4.39258 4.47308 4.50320 4.62118 4.62672 4.68189 4.75119 4.87471 4.95272 5.04762 5.06636 5.13216 5.16112 5.18438 5.23064 5.27362 5.33936 5.50043 5.53566 5.60420 5.63886 5.67269 5.68146 5.71801 5.79799 5.81845 5.91625 5.95845 6.07482 6.21861 6.26979 6.27553 6.31886 6.36080 6.46798 6.62702 6.74702 6.96236 7.15689 7.36827 7.75189 8.26186 8.47581 9.00387 9.53069 10.39483 11.23849 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014088 B = 0.002705 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.025840 B =10348.538076 C =10982.037110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.148 3.852 3 C -0.161 4.161 4 N -0.350 5.350 5 N -0.293 5.293 6 C 0.079 3.921 7 C -0.286 4.286 8 C 0.593 3.407 9 O -0.543 6.543 10 N -0.720 5.720 11 C 0.156 3.844 12 H 0.089 0.911 13 C -0.157 4.157 14 C -0.140 4.140 15 C 0.135 3.865 16 N -0.630 5.630 17 C -0.301 4.301 18 H 0.081 0.919 19 C -0.025 4.025 20 N -0.937 5.937 21 Si 1.075 2.925 22 H -0.297 1.297 23 H -0.293 1.293 24 H -0.290 1.290 25 C 0.107 3.893 26 C 0.182 3.818 27 C -0.097 4.097 28 C -0.191 4.191 29 C -0.123 4.123 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.109 0.891 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.189 0.811 38 H 0.397 0.603 39 H 0.066 0.934 40 H 0.056 0.944 41 H 0.054 0.946 42 H 0.098 0.902 43 H 0.047 0.953 44 H 0.040 0.960 45 H 0.260 0.740 46 H 0.043 0.957 47 H 0.046 0.954 48 H 0.129 0.871 49 H 0.093 0.907 50 H 0.103 0.897 51 H 0.105 0.895 52 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.209 21.232 -22.927 31.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.047 3.953 3 C -0.219 4.219 4 N -0.130 5.130 5 N -0.111 5.111 6 C -0.108 4.108 7 C -0.301 4.301 8 C 0.381 3.619 9 O -0.421 6.421 10 N -0.370 5.370 11 C 0.052 3.948 12 H 0.107 0.893 13 C -0.216 4.216 14 C -0.160 4.160 15 C 0.008 3.992 16 N -0.358 5.358 17 C -0.427 4.427 18 H 0.099 0.901 19 C -0.224 4.224 20 N -0.579 5.579 21 Si 0.908 3.092 22 H -0.225 1.225 23 H -0.221 1.221 24 H -0.217 1.217 25 C -0.018 4.018 26 C 0.050 3.950 27 C -0.117 4.117 28 C -0.228 4.228 29 C -0.161 4.161 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.126 0.874 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.206 0.794 38 H 0.230 0.770 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.116 0.884 43 H 0.065 0.935 44 H 0.057 0.943 45 H 0.070 0.930 46 H 0.061 0.939 47 H 0.064 0.936 48 H 0.146 0.854 49 H 0.111 0.889 50 H 0.121 0.879 51 H 0.123 0.877 52 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.136 21.911 -23.726 32.316 hybrid contribution 1.945 -0.697 0.799 2.215 sum 3.082 21.214 -22.928 31.388 Atomic orbital electron populations 1.22146 0.92997 1.03159 1.03690 1.21532 0.95828 0.94127 0.83844 1.22129 1.01858 0.94263 1.03607 1.48663 1.37595 1.20779 1.05924 1.77122 1.24136 1.23617 0.86256 1.24044 0.94652 0.92065 1.00076 1.20034 1.13994 1.04204 0.91844 1.17161 0.79942 0.82714 0.82119 1.90747 1.45631 1.50363 1.55356 1.45879 1.51174 1.32870 1.07063 1.20945 0.90010 0.88434 0.95454 0.89263 1.22115 0.96017 1.01772 1.01664 1.23547 0.99555 0.97657 0.95233 1.22244 0.90260 0.90474 0.96200 1.46026 1.04104 1.57715 1.27964 1.20172 0.93315 1.22420 1.06798 0.90103 1.25723 0.95457 1.00522 1.00670 1.70914 1.36513 1.26890 1.23593 0.83645 0.75649 0.74896 0.74972 1.22463 1.22137 1.21745 1.22820 0.95885 0.91406 0.91725 1.20528 0.91680 0.87887 0.94932 1.20420 0.99125 0.99537 0.92600 1.23243 0.98552 1.05064 0.95899 1.22811 1.02399 0.90157 1.00747 0.90844 0.90475 0.91979 0.87359 0.91998 0.90521 0.90931 0.79406 0.76959 0.91468 0.92525 0.92659 0.88424 0.93465 0.94261 0.92977 0.93945 0.93636 0.85380 0.88867 0.87859 0.87659 0.88535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.00 9.45 37.16 0.35 -0.65 16 2 C 0.15 1.02 3.16 -67.93 -0.21 0.80 16 3 C -0.16 -0.95 9.45 37.16 0.35 -0.60 16 4 N -0.35 -3.53 3.25 -50.16 -0.16 -3.69 16 5 N -0.29 -3.37 12.33 30.86 0.38 -2.99 16 6 C 0.08 0.87 11.50 -16.98 -0.20 0.68 16 7 C -0.29 -3.54 6.12 -105.07 -0.64 -4.18 16 8 C 0.59 8.28 7.78 -12.52 -0.10 8.18 16 9 O -0.54 -8.79 14.39 5.27 0.08 -8.71 16 10 N -0.72 -9.27 5.07 -54.88 -0.28 -9.55 16 11 C 0.16 2.23 2.47 -67.93 -0.17 2.06 16 12 H 0.09 1.45 7.32 -51.93 -0.38 1.07 16 13 C -0.16 -1.97 9.29 37.16 0.35 -1.62 16 14 C -0.14 -2.34 3.67 -89.97 -0.33 -2.67 16 15 C 0.14 2.62 7.33 -8.51 -0.06 2.56 16 16 N -0.63 -15.70 3.67 -184.61 -0.68 -16.38 16 17 C -0.30 -8.83 11.09 -15.06 -0.17 -8.99 16 18 H 0.08 2.49 8.05 -52.49 -0.42 2.07 16 19 C -0.03 -0.77 5.50 -17.43 -0.10 -0.86 16 20 N -0.94 -30.05 13.70 55.49 0.76 -29.29 16 21 Si 1.07 27.55 24.98 -169.99 -4.25 23.31 16 22 H -0.30 -7.73 7.11 56.52 0.40 -7.32 16 23 H -0.29 -7.04 6.76 56.52 0.38 -6.66 16 24 H -0.29 -7.03 6.42 56.52 0.36 -6.67 16 25 C 0.11 2.28 5.56 -8.38 -0.05 2.24 16 26 C 0.18 2.04 6.45 -81.60 -0.53 1.51 16 27 C -0.10 -0.92 4.84 -91.77 -0.44 -1.37 16 28 C -0.19 -1.36 8.53 -26.69 -0.23 -1.59 16 29 C -0.12 -1.22 9.01 -26.69 -0.24 -1.46 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.11 0.60 5.63 -51.93 -0.29 0.30 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.19 1.53 7.53 -52.49 -0.40 1.13 16 38 H 0.40 4.28 7.58 -40.82 -0.31 3.97 16 39 H 0.07 0.81 7.48 -51.93 -0.39 0.42 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 43 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.04 0.73 8.10 -51.93 -0.42 0.31 16 45 H 0.26 8.23 8.73 -40.82 -0.36 7.88 16 46 H 0.04 0.92 7.93 -51.93 -0.41 0.50 16 47 H 0.05 1.02 3.90 -51.93 -0.20 0.81 16 48 H 0.13 1.16 8.14 -51.93 -0.42 0.74 16 49 H 0.09 0.64 7.47 -51.93 -0.39 0.26 16 50 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 51 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 52 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 412.59 15.07 6.22 6.22 Total: -1.00 -35.72 412.59 -9.08 -44.80 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -8.74 Total: 2.24 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: -2.41 Total: -5.95 kcal Atomic # 7 Polarization: -61.92 SS G_CDS: 0.02 Total: -61.90 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.08 Total: -8.71 kcal Atomic # 14 Polarization: 27.55 SS G_CDS: -4.25 Total: 23.31 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -35.72 -9.08 -44.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970709900.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.859 kcal (2) G-P(sol) polarization free energy of solvation -35.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds