Wall clock time and date at job start Wed Apr 1 2020 04:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47758 * 2 1 4 4 N 1.46506 * 109.47215 * 240.00421 * 2 1 3 5 5 C 1.34771 * 119.99858 * 84.99661 * 4 2 1 6 6 O 1.21601 * 120.00558 * 0.02562 * 5 4 2 7 7 C 1.47429 * 119.99986 * 180.02562 * 5 4 2 8 8 C 1.38046 * 126.41399 * 359.68598 * 7 5 4 9 9 N 1.34261 * 107.42002 * 179.87343 * 8 7 5 10 10 H 0.96994 * 125.75612 * 180.11253 * 9 8 7 11 11 N 1.39935 * 108.49052 * 0.39493 * 9 8 7 12 12 C 1.30456 * 108.89688 * 359.75084 * 11 9 8 13 13 C 1.50693 * 125.98948 * 179.97438 * 12 11 9 14 14 C 1.53004 * 109.47034 * 59.99852 * 13 12 11 15 15 C 1.53000 * 109.47339 * 179.97438 * 14 13 12 16 16 C 1.53003 * 109.46829 * 59.99989 * 15 14 13 17 17 C 1.52991 * 109.47331 * 300.00257 * 16 15 14 18 18 C 1.53000 * 109.47374 * 60.00076 * 17 16 15 19 19 C 1.52994 * 109.47370 * 120.00200 * 2 1 3 20 20 C 1.53940 * 113.74425 * 281.99563 * 19 2 1 21 21 N 1.47813 * 86.03742 * 222.07990 * 20 19 2 22 22 C 1.36939 * 134.45700 * 204.63917 * 21 20 19 23 23 H 1.07993 * 120.00048 * 179.86964 * 22 21 20 24 24 C 1.38812 * 120.00124 * 359.87128 * 22 21 20 25 25 N 1.31624 * 119.99923 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 120.00044 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47152 * 60.00284 * 26 24 22 28 28 H 1.48503 * 109.47278 * 179.97438 * 26 24 22 29 29 H 1.48497 * 109.47286 * 300.00290 * 26 24 22 30 30 C 1.47581 * 91.04980 * 24.54852 * 21 20 19 31 31 H 1.09006 * 109.46879 * 295.81029 * 1 2 3 32 32 H 1.08992 * 109.47409 * 175.80961 * 1 2 3 33 33 H 1.09004 * 109.47115 * 55.80350 * 1 2 3 34 34 H 0.96998 * 119.99630 * 265.00450 * 4 2 1 35 35 H 1.08004 * 126.29145 * 0.02562 * 8 7 5 36 36 H 1.08997 * 109.47509 * 179.97438 * 13 12 11 37 37 H 1.08997 * 109.47546 * 300.00302 * 14 13 12 38 38 H 1.09006 * 109.47041 * 60.00158 * 14 13 12 39 39 H 1.09006 * 109.47144 * 300.00701 * 15 14 13 40 40 H 1.08997 * 109.47478 * 180.02562 * 15 14 13 41 41 H 1.08999 * 109.47208 * 179.97438 * 16 15 14 42 42 H 1.09006 * 109.46676 * 60.00425 * 16 15 14 43 43 H 1.09006 * 109.47377 * 299.99738 * 17 16 15 44 44 H 1.09006 * 109.47203 * 179.97438 * 17 16 15 45 45 H 1.08997 * 109.47478 * 180.02562 * 18 17 16 46 46 H 1.08997 * 109.47201 * 59.99520 * 18 17 16 47 47 H 1.09003 * 112.94389 * 53.58666 * 19 2 1 48 48 H 1.08998 * 113.77360 * 336.34571 * 20 19 2 49 49 H 1.08999 * 113.76957 * 107.74222 * 20 19 2 50 50 H 0.96997 * 119.99980 * 179.97438 * 25 24 22 51 51 H 1.08994 * 113.77118 * 221.14684 * 30 21 20 52 52 H 1.09006 * 113.87070 * 89.76609 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1963 5 6 2.1470 -0.0181 -2.3571 6 8 1.8582 1.1618 -2.4116 7 6 2.6379 -0.7131 -3.5611 8 6 3.0076 -2.0403 -3.6476 9 7 3.3896 -2.2694 -4.9142 10 1 3.7000 -3.1175 -5.2680 11 7 3.2704 -1.0767 -5.6363 12 6 2.8240 -0.1440 -4.8409 13 6 2.5545 1.2892 -5.2203 14 6 1.5014 1.3339 -6.3293 15 6 1.2273 2.7891 -6.7142 16 6 2.5207 3.4370 -7.2126 17 6 3.5737 3.3924 -6.1037 18 6 3.8478 1.9372 -5.7189 19 6 2.0400 -0.7213 1.2491 20 6 1.9705 0.1314 2.5290 21 7 3.3068 -0.4165 2.8436 22 6 4.0153 -0.6125 3.9990 23 1 5.0036 -1.0461 3.9595 24 6 3.4631 -0.2540 5.2211 25 7 2.2584 0.2740 5.2694 26 14 4.4293 -0.5220 6.7972 27 1 5.6978 0.2477 6.7371 28 1 3.6244 -0.0589 7.9560 29 1 4.7339 -1.9672 6.9513 30 6 3.5698 -0.6695 1.4137 31 1 -0.3633 0.4475 0.9252 32 1 -0.3634 -1.0248 -0.0751 33 1 -0.3633 0.5776 -0.8500 34 1 2.2490 -1.6317 -1.1527 35 1 2.9902 -2.7625 -2.8447 36 1 2.1879 1.8329 -4.3496 37 1 1.8675 0.7901 -7.2002 38 1 0.5798 0.8726 -5.9741 39 1 0.8610 3.3325 -5.8431 40 1 0.4768 2.8209 -7.5040 41 1 2.3254 4.4736 -7.4873 42 1 2.8869 2.8936 -8.0837 43 1 3.2074 3.9358 -5.2327 44 1 4.4953 3.8536 -6.4590 45 1 4.5977 1.9054 -4.9285 46 1 4.2141 1.3938 -6.5899 47 1 1.6199 -1.7205 1.3642 48 1 1.9689 1.2052 2.3420 49 1 1.1913 -0.1819 3.2238 50 1 1.8724 0.5242 6.1233 51 1 4.0650 -1.6208 1.2196 52 1 4.0391 0.1676 0.8966 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970715049.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:01 Heat of formation + Delta-G solvation = 38.267073 kcal Electronic energy + Delta-G solvation = -30753.084291 eV Core-core repulsion = 26753.615558 eV Total energy + Delta-G solvation = -3999.468733 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.46594 -40.64209 -39.37003 -39.19181 -36.08142 -34.14589 -33.76691 -32.47515 -31.62572 -30.58458 -30.44952 -29.26531 -26.55456 -25.73012 -24.45645 -24.29896 -23.44399 -22.62056 -21.37581 -21.10274 -20.40287 -20.13458 -19.23333 -18.71391 -17.41764 -17.03858 -16.77542 -16.46168 -16.17157 -15.80657 -15.43899 -15.20408 -15.17701 -15.04345 -14.96996 -14.89074 -14.59981 -14.20682 -14.00578 -13.41386 -13.33344 -13.23155 -13.07034 -13.05907 -13.04091 -12.91991 -12.63276 -12.39079 -12.17935 -12.01022 -12.00286 -11.91433 -11.76077 -11.53176 -11.37972 -11.17430 -11.17369 -11.08717 -10.83754 -10.56841 -10.38638 -10.05188 -9.66584 -8.89618 -7.88641 -5.21928 0.61148 1.14448 1.45975 1.49484 1.55576 1.85113 2.34006 2.49074 2.54692 3.31673 3.42658 3.45472 3.66836 3.77626 3.91455 3.92812 4.02590 4.06972 4.26514 4.32185 4.38687 4.40585 4.49919 4.52172 4.62640 4.63322 4.64097 4.65375 4.65740 4.78042 4.81698 4.90977 4.92561 4.97319 5.01672 5.13613 5.18080 5.24346 5.27985 5.28142 5.30303 5.36182 5.37872 5.43459 5.48166 5.56836 5.61147 5.68379 5.71956 5.96598 6.32449 6.55437 6.80748 6.93949 7.45875 7.62961 8.59138 9.28217 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016768 B = 0.002196 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.456175 B =12748.048782 C =13149.358144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.166 3.834 3 H 0.058 0.942 4 N -0.704 5.704 5 C 0.591 3.409 6 O -0.583 6.583 7 C -0.319 4.319 8 C 0.136 3.864 9 N -0.447 5.447 10 H 0.461 0.539 11 N -0.316 5.316 12 C 0.129 3.871 13 C -0.024 4.024 14 C -0.098 4.098 15 C -0.118 4.118 16 C -0.115 4.115 17 C -0.119 4.119 18 C -0.100 4.100 19 C -0.106 4.106 20 C 0.169 3.831 21 N -0.644 5.644 22 C -0.236 4.236 23 H 0.083 0.917 24 C -0.069 4.069 25 N -0.954 5.954 26 Si 0.978 3.022 27 H -0.281 1.281 28 H -0.295 1.295 29 H -0.273 1.273 30 C 0.128 3.872 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.049 0.951 34 H 0.411 0.589 35 H 0.232 0.768 36 H 0.093 0.907 37 H 0.066 0.934 38 H 0.051 0.949 39 H 0.055 0.945 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.067 0.933 43 H 0.054 0.946 44 H 0.073 0.927 45 H 0.046 0.954 46 H 0.066 0.934 47 H 0.108 0.892 48 H 0.009 0.991 49 H 0.046 0.954 50 H 0.248 0.752 51 H 0.064 0.936 52 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.994 -5.406 -26.967 27.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.060 3.940 3 H 0.077 0.923 4 N -0.355 5.355 5 C 0.380 3.620 6 O -0.464 6.464 7 C -0.334 4.334 8 C -0.019 4.019 9 N -0.153 5.153 10 H 0.309 0.691 11 N -0.138 5.138 12 C -0.039 4.039 13 C -0.044 4.044 14 C -0.136 4.136 15 C -0.156 4.156 16 C -0.152 4.152 17 C -0.156 4.156 18 C -0.138 4.138 19 C -0.126 4.126 20 C 0.043 3.957 21 N -0.371 5.371 22 C -0.364 4.364 23 H 0.101 0.899 24 C -0.262 4.262 25 N -0.603 5.603 26 Si 0.806 3.194 27 H -0.207 1.207 28 H -0.221 1.221 29 H -0.198 1.198 30 C 0.003 3.997 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.069 0.931 34 H 0.248 0.752 35 H 0.248 0.752 36 H 0.111 0.889 37 H 0.084 0.916 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.073 0.927 44 H 0.091 0.909 45 H 0.065 0.935 46 H 0.085 0.915 47 H 0.126 0.874 48 H 0.027 0.973 49 H 0.065 0.935 50 H 0.057 0.943 51 H 0.083 0.917 52 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -0.742 -4.883 -27.860 28.295 hybrid contribution 0.475 -0.360 2.116 2.198 sum -0.268 -5.243 -25.744 26.274 Atomic orbital electron populations 1.22036 0.94310 1.02854 1.01735 1.20689 0.94492 0.95862 0.82954 0.92346 1.45679 1.67141 1.14329 1.08369 1.17535 0.76239 0.85658 0.82531 1.90685 1.53122 1.17338 1.85248 1.20306 1.21971 0.95656 0.95469 1.23738 0.92358 0.96330 0.89475 1.46163 1.50331 1.11578 1.07231 0.69110 1.77071 1.25341 0.91531 1.19870 1.22497 0.94593 0.96330 0.90435 1.19967 0.97019 0.87367 1.00050 1.21437 0.97302 0.97677 0.97219 1.21536 0.98103 0.94793 1.01138 1.21522 0.94692 1.01165 0.97869 1.21536 0.99700 0.95426 0.98978 1.21445 0.95549 0.96526 1.00301 1.23427 0.95889 1.00386 0.92889 1.22138 0.88181 0.93697 0.91652 1.46438 1.17183 1.72251 1.01218 1.19394 0.98704 1.34120 0.84185 0.89905 1.25637 0.98149 1.01685 1.00710 1.69995 1.16735 1.48856 1.24682 0.85159 0.77386 0.78142 0.78687 1.20704 1.22108 1.19837 1.22670 0.94921 0.98442 0.83625 0.92046 0.90657 0.93140 0.75186 0.75182 0.88901 0.91574 0.93039 0.92598 0.90605 0.90898 0.91421 0.92677 0.90852 0.93484 0.91536 0.87384 0.97329 0.93549 0.94263 0.91738 0.95303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.05 9.46 71.98 0.68 -3.37 16 2 C 0.17 4.87 2.29 44.99 0.10 4.98 16 3 H 0.06 2.12 7.49 -2.38 -0.02 2.10 16 4 N -0.70 -16.29 4.94 -445.81 -2.20 -18.49 16 5 C 0.59 16.17 7.78 86.67 0.67 16.85 16 6 O -0.58 -20.69 14.23 -4.03 -0.06 -20.74 16 7 C -0.32 -7.04 6.13 -20.15 -0.12 -7.17 16 8 C 0.14 1.67 11.52 84.28 0.97 2.64 16 9 N -0.45 -5.53 7.29 -56.31 -0.41 -5.94 16 10 H 0.46 2.06 8.96 -213.43 -1.91 0.15 16 11 N -0.32 -6.55 12.63 -46.68 -0.59 -7.14 16 12 C 0.13 3.07 5.77 43.51 0.25 3.32 16 13 C -0.02 -0.57 2.53 -11.54 -0.03 -0.60 16 14 C -0.10 -2.00 5.19 30.60 0.16 -1.84 16 15 C -0.12 -2.05 5.92 30.60 0.18 -1.87 16 16 C -0.12 -1.78 5.92 30.59 0.18 -1.60 16 17 C -0.12 -2.17 5.92 30.59 0.18 -1.99 16 18 C -0.10 -2.15 5.19 30.60 0.16 -1.99 16 19 C -0.11 -3.57 3.35 -10.14 -0.03 -3.60 16 20 C 0.17 7.95 6.90 86.44 0.60 8.55 16 21 N -0.64 -32.91 3.70 -716.16 -2.65 -35.56 16 22 C -0.24 -13.25 10.70 84.03 0.90 -12.35 16 23 H 0.08 4.43 7.83 -2.91 -0.02 4.40 16 24 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 25 N -0.95 -57.90 11.39 21.65 0.25 -57.65 16 26 Si 0.98 45.80 29.55 68.60 2.03 47.83 16 27 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 28 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 29 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 30 C 0.13 4.91 8.38 86.49 0.72 5.63 16 31 H 0.06 1.75 7.99 -2.38 -0.02 1.73 16 32 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.41 6.42 7.53 -92.71 -0.70 5.73 16 35 H 0.23 0.53 7.46 -2.91 -0.02 0.51 16 36 H 0.09 2.76 5.60 -2.39 -0.01 2.74 16 37 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 39 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 40 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 43 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 44 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 45 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 48 H 0.01 0.44 8.03 -2.39 -0.02 0.42 16 49 H 0.05 2.42 7.16 -2.39 -0.02 2.41 16 50 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 51 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 52 H 0.03 1.15 8.10 -2.38 -0.02 1.13 16 Total: -1.00 -78.23 411.95 0.72 -77.51 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: -1.68 Total: 18.08 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: 6.04 Total: 2.10 kcal Atomic # 7 Polarization: -119.17 SS G_CDS: -5.61 Total: -124.78 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -0.06 Total: -20.74 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -78.23 0.72 -77.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970715049.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.777 kcal (2) G-P(sol) polarization free energy of solvation -78.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds