Wall clock time and date at job start Wed Apr 1 2020 04:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47213 * 2 1 4 4 C 1.52998 * 109.47276 * 239.99710 * 2 1 3 5 5 C 1.50698 * 109.47367 * 64.99754 * 4 2 1 6 6 C 1.39871 * 126.03567 * 90.02505 * 5 4 2 7 7 N 1.30839 * 108.20310 * 179.97438 * 6 5 4 8 8 N 1.40086 * 108.20477 * 0.02562 * 7 6 5 9 9 C 1.46494 * 126.03848 * 180.02562 * 8 7 6 10 10 C 1.34957 * 107.92463 * 359.75369 * 8 7 6 11 11 C 1.50706 * 109.47146 * 119.99911 * 2 1 3 12 12 O 1.21273 * 120.00131 * 119.99760 * 11 2 1 13 13 N 1.34785 * 119.99423 * 299.99798 * 11 2 1 14 14 C 1.47676 * 134.44743 * 179.97438 * 13 11 2 15 15 C 1.53439 * 85.96970 * 155.71314 * 14 13 11 16 16 C 1.47665 * 134.45760 * 0.02562 * 13 11 2 17 17 C 1.52635 * 113.71616 * 268.85266 * 15 14 13 18 18 C 1.53177 * 109.35688 * 171.27405 * 17 15 14 19 19 C 1.52673 * 109.42917 * 58.92917 * 18 17 15 20 20 N 1.46896 * 109.34236 * 303.76841 * 19 18 17 21 21 C 1.36936 * 120.69032 * 235.31219 * 20 19 18 22 22 H 1.08002 * 120.00329 * 151.86394 * 21 20 19 23 23 C 1.38813 * 119.99974 * 331.85629 * 21 20 19 24 24 N 1.31621 * 120.00018 * 335.06110 * 23 21 20 25 25 Si 1.86807 * 119.99937 * 155.05530 * 23 21 20 26 26 H 1.48498 * 109.46845 * 60.00293 * 25 23 21 27 27 H 1.48498 * 109.47066 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47009 * 300.00348 * 25 23 21 29 29 C 1.47122 * 118.62160 * 55.03836 * 20 19 18 30 30 H 1.09003 * 109.47213 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47239 * 300.00107 * 1 2 3 32 32 H 1.09003 * 109.47149 * 60.00195 * 1 2 3 33 33 H 1.09001 * 109.47677 * 185.00379 * 4 2 1 34 34 H 1.09007 * 109.47074 * 305.00247 * 4 2 1 35 35 H 1.08001 * 125.90310 * 359.97438 * 6 5 4 36 36 H 1.09002 * 109.47871 * 89.97197 * 9 8 7 37 37 H 1.09008 * 109.47171 * 209.96947 * 9 8 7 38 38 H 1.09000 * 109.47101 * 329.96408 * 9 8 7 39 39 H 1.07996 * 126.13090 * 180.24413 * 10 8 7 40 40 H 1.08996 * 113.79208 * 41.44929 * 14 13 11 41 41 H 1.08996 * 113.79180 * 269.97299 * 14 13 11 42 42 H 1.08996 * 113.79851 * 90.02030 * 16 13 11 43 43 H 1.09009 * 113.78737 * 318.54092 * 16 13 11 44 44 H 1.09000 * 109.48569 * 291.24037 * 17 15 14 45 45 H 1.08998 * 109.48934 * 51.30802 * 17 15 14 46 46 H 1.09000 * 109.49309 * 179.01872 * 18 17 15 47 47 H 1.08999 * 109.49112 * 299.09670 * 18 17 15 48 48 H 1.08995 * 109.44337 * 183.78909 * 19 18 17 49 49 H 1.08996 * 109.37269 * 63.70961 * 19 18 17 50 50 H 0.97000 * 119.99828 * 354.25986 * 24 23 21 51 51 H 1.09001 * 109.63282 * 68.58180 * 29 20 19 52 52 H 1.09003 * 109.63687 * 189.18927 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0568 -2.4766 6 6 2.3903 1.0663 -3.0902 7 7 1.7186 1.5020 -4.1250 8 7 0.5189 0.7829 -4.2024 9 6 -0.5255 0.9553 -5.2151 10 6 0.4979 -0.1010 -3.1827 11 6 2.0323 -0.7104 1.2305 12 8 2.7295 -1.6965 1.1193 13 7 1.7067 -0.2498 2.4546 14 6 2.0092 -0.6784 3.8350 15 6 1.7488 0.7812 4.2300 16 6 0.9037 0.8850 2.9528 17 6 3.0001 1.6550 4.2108 18 6 2.5989 3.1207 4.4039 19 6 1.8618 3.2747 5.7320 20 7 0.7083 2.3655 5.7567 21 6 -0.5529 2.8429 5.9944 22 1 -1.4107 2.3288 5.5865 23 6 -0.7290 3.9874 6.7599 24 7 0.1839 4.3364 7.6415 25 14 -2.2614 5.0325 6.5385 26 1 -3.4652 4.2147 6.8339 27 1 -2.2092 6.1905 7.4666 28 1 -2.3278 5.5234 5.1385 29 6 0.9354 0.9322 5.5146 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 3.1263 -0.7996 -1.2056 34 1 1.6053 -1.7199 -1.2951 35 1 3.3562 1.4243 -2.7659 36 1 -0.3252 0.2962 -6.0598 37 1 -1.4951 0.7075 -4.7829 38 1 -0.5337 1.9906 -5.5560 39 1 -0.2911 -0.8064 -2.9676 40 1 3.0417 -0.9958 3.9806 41 1 1.2845 -1.3811 4.2461 42 1 -0.1494 0.6468 3.1017 43 1 1.0580 1.8101 2.3972 44 1 3.6679 1.3515 5.0170 45 1 3.5091 1.5403 3.2538 46 1 3.4924 3.7449 4.4079 47 1 1.9433 3.4286 3.5893 48 1 1.5174 4.3033 5.8387 49 1 2.5375 3.0286 6.5511 50 1 0.9379 3.7517 7.8162 51 1 1.4876 0.5026 6.3504 52 1 -0.0221 0.4232 5.4040 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982092459.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:29 Heat of formation + Delta-G solvation = 71.138557 kcal Electronic energy + Delta-G solvation = -31153.891209 eV Core-core repulsion = 27155.847891 eV Total energy + Delta-G solvation = -3998.043319 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.22573 -41.84542 -39.82585 -37.66598 -36.10473 -34.55016 -33.90034 -32.37526 -31.74886 -30.73838 -28.67095 -27.40382 -27.27049 -27.02014 -26.49508 -24.01492 -23.78974 -22.21681 -21.93509 -20.99658 -19.96056 -19.30492 -19.21301 -18.11060 -17.40725 -17.03790 -16.85446 -16.28268 -16.19161 -15.86734 -15.81774 -15.40076 -15.32082 -14.96261 -14.71977 -14.67342 -14.25016 -14.11671 -13.94999 -13.85200 -13.57176 -13.36587 -13.31964 -13.19643 -13.12917 -12.93555 -12.76974 -12.64040 -12.43781 -12.13096 -12.04876 -11.94666 -11.89727 -11.74997 -11.58874 -11.44802 -11.30730 -11.02077 -10.69250 -10.36697 -10.34110 -9.68658 -9.27665 -8.84112 -8.16343 -5.32212 0.96086 1.61686 1.63070 1.69691 1.70328 1.75614 1.87731 1.97093 2.70185 3.19797 3.32601 3.45169 3.68774 3.71065 3.79585 3.93174 3.97704 4.04649 4.10799 4.23137 4.29144 4.34796 4.36061 4.44774 4.45224 4.52068 4.56170 4.58796 4.63190 4.64613 4.70913 4.73573 4.82328 4.85248 4.90012 4.90832 4.91744 5.00125 5.03313 5.07146 5.20049 5.22964 5.27070 5.28185 5.36521 5.38114 5.52170 5.70689 5.91702 6.16390 6.46512 6.73874 6.74732 7.11920 7.15323 7.84638 8.30337 9.08493 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012092 B = 0.002619 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2315.031285 B =10690.441078 C =11999.404440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.091 4.091 3 H 0.096 0.904 4 C -0.008 4.008 5 C -0.244 4.244 6 C 0.042 3.958 7 N -0.336 5.336 8 N -0.382 5.382 9 C 0.092 3.908 10 C 0.066 3.934 11 C 0.535 3.465 12 O -0.586 6.586 13 N -0.636 5.636 14 C 0.117 3.883 15 C -0.098 4.098 16 C 0.132 3.868 17 C -0.075 4.075 18 C -0.123 4.123 19 C 0.154 3.846 20 N -0.611 5.611 21 C -0.344 4.344 22 H 0.056 0.944 23 C -0.077 4.077 24 N -0.946 5.946 25 Si 1.109 2.891 26 H -0.277 1.277 27 H -0.298 1.298 28 H -0.279 1.279 29 C 0.164 3.836 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.191 0.809 36 H 0.085 0.915 37 H 0.114 0.886 38 H 0.087 0.913 39 H 0.202 0.798 40 H 0.080 0.920 41 H 0.095 0.905 42 H 0.090 0.910 43 H 0.082 0.918 44 H 0.062 0.938 45 H 0.066 0.934 46 H 0.070 0.930 47 H 0.056 0.944 48 H 0.043 0.957 49 H 0.001 0.999 50 H 0.254 0.746 51 H 0.017 0.983 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.792 -9.330 -22.113 24.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.112 4.112 3 H 0.114 0.886 4 C -0.047 4.047 5 C -0.256 4.256 6 C -0.143 4.143 7 N -0.158 5.158 8 N -0.164 5.164 9 C -0.048 4.048 10 C -0.081 4.081 11 C 0.327 3.673 12 O -0.467 6.467 13 N -0.370 5.370 14 C -0.006 4.006 15 C -0.101 4.101 16 C 0.009 3.991 17 C -0.113 4.113 18 C -0.162 4.162 19 C 0.028 3.972 20 N -0.335 5.335 21 C -0.474 4.474 22 H 0.074 0.926 23 C -0.273 4.273 24 N -0.589 5.589 25 Si 0.935 3.065 26 H -0.202 1.202 27 H -0.225 1.225 28 H -0.205 1.205 29 C 0.038 3.962 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.208 0.792 36 H 0.104 0.896 37 H 0.132 0.868 38 H 0.106 0.894 39 H 0.219 0.781 40 H 0.098 0.902 41 H 0.113 0.887 42 H 0.108 0.892 43 H 0.100 0.900 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.088 0.912 47 H 0.075 0.925 48 H 0.062 0.938 49 H 0.019 0.981 50 H 0.064 0.936 51 H 0.035 0.965 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.312 -7.676 -23.019 24.301 hybrid contribution 0.974 -1.824 0.783 2.211 sum -0.338 -9.500 -22.236 24.183 Atomic orbital electron populations 1.21768 0.91822 1.02706 1.03105 1.21203 0.98543 1.00487 0.91009 0.88565 1.19492 1.00674 0.96795 0.87739 1.20036 0.97601 1.05067 1.02881 1.24105 1.00724 0.96282 0.93215 1.77303 0.95491 1.20494 1.22525 1.48808 1.15852 1.28076 1.23645 1.22178 0.87956 1.04628 0.89994 1.22802 1.00115 0.95741 0.89455 1.20892 0.79155 0.83355 0.83911 1.90652 1.40871 1.28491 1.86691 1.50159 1.51237 1.31010 1.04617 1.23202 1.02120 0.96032 0.79232 1.22419 0.96939 0.94873 0.95832 1.23154 0.95679 0.88722 0.91497 1.21041 0.94978 0.93843 1.01437 1.21823 0.99572 0.96647 0.98168 1.20694 0.87974 0.94340 0.94151 1.44291 1.03770 1.02105 1.83335 1.20175 0.85070 1.13275 1.28867 0.92631 1.27034 1.06085 1.01209 0.92985 1.70898 1.15141 1.41920 1.30915 0.82919 0.72570 0.74952 0.76068 1.20242 1.22485 1.20515 1.20867 0.97134 0.85064 0.93152 0.91921 0.92481 0.90381 0.91673 0.90974 0.79227 0.89626 0.86772 0.89416 0.78120 0.90180 0.88713 0.89241 0.89975 0.91921 0.91563 0.91180 0.92530 0.93815 0.98068 0.93621 0.96489 0.92143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 8.78 71.98 0.63 -1.75 16 2 C -0.09 -1.90 2.54 -11.54 -0.03 -1.93 16 3 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 4 C -0.01 -0.16 4.52 29.85 0.13 -0.02 16 5 C -0.24 -4.50 4.81 -20.14 -0.10 -4.60 16 6 C 0.04 0.86 11.96 85.24 1.02 1.88 16 7 N -0.34 -7.57 12.58 -57.02 -0.72 -8.29 16 8 N -0.38 -6.34 4.01 -369.57 -1.48 -7.83 16 9 C 0.09 0.72 11.47 127.77 1.47 2.19 16 10 C 0.07 0.98 10.04 83.54 0.84 1.82 16 11 C 0.54 14.64 7.39 87.66 0.65 15.29 16 12 O -0.59 -19.98 16.65 -3.01 -0.05 -20.03 16 13 N -0.64 -16.74 3.41 -843.28 -2.88 -19.62 16 14 C 0.12 3.05 7.97 86.30 0.69 3.74 16 15 C -0.10 -2.87 0.87 -52.03 -0.05 -2.92 16 16 C 0.13 3.49 5.86 86.32 0.51 4.00 16 17 C -0.08 -2.22 5.03 30.53 0.15 -2.06 16 18 C -0.12 -4.18 5.99 30.54 0.18 -4.00 16 19 C 0.15 6.84 4.62 86.20 0.40 7.24 16 20 N -0.61 -28.07 2.86 -700.45 -2.00 -30.07 16 21 C -0.34 -17.88 9.50 84.03 0.80 -17.08 16 22 H 0.06 2.84 7.94 -2.91 -0.02 2.82 16 23 C -0.08 -4.18 4.69 84.86 0.40 -3.79 16 24 N -0.95 -56.11 12.39 21.65 0.27 -55.85 16 25 Si 1.11 48.92 29.99 68.60 2.06 50.98 16 26 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16 27 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 28 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 29 C 0.16 6.03 5.71 86.19 0.49 6.52 16 30 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.06 1.08 6.12 -2.39 -0.01 1.06 16 32 H 0.08 1.18 6.43 -2.39 -0.02 1.17 16 33 H 0.06 1.45 7.96 -2.39 -0.02 1.43 16 34 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 35 H 0.19 3.20 8.06 -2.91 -0.02 3.17 16 36 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.11 0.27 8.14 -2.38 -0.02 0.25 16 38 H 0.09 0.71 8.14 -2.39 -0.02 0.70 16 39 H 0.20 1.61 8.06 -2.91 -0.02 1.59 16 40 H 0.08 2.08 8.09 -2.39 -0.02 2.06 16 41 H 0.09 2.27 8.09 -2.39 -0.02 2.25 16 42 H 0.09 2.36 7.79 -2.39 -0.02 2.34 16 43 H 0.08 2.17 7.37 -2.38 -0.02 2.15 16 44 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.07 1.80 8.02 -2.39 -0.02 1.78 16 46 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 47 H 0.06 1.94 7.37 -2.39 -0.02 1.93 16 48 H 0.04 2.25 6.23 -2.39 -0.01 2.23 16 49 H 0.00 0.06 7.94 -2.39 -0.02 0.04 16 50 H 0.25 15.36 6.77 -92.71 -0.63 14.73 16 51 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 52 H 0.06 2.18 7.78 -2.39 -0.02 2.17 16 Total: -1.00 -71.74 408.24 4.42 -67.32 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: 1.04 Total: 18.85 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: 8.18 Total: 4.53 kcal Atomic # 7 Polarization: -114.84 SS G_CDS: -6.81 Total: -121.65 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -0.05 Total: -20.03 kcal Atomic # 14 Polarization: 48.92 SS G_CDS: 2.06 Total: 50.98 kcal Total: -71.74 4.42 -67.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982092459.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.462 kcal (2) G-P(sol) polarization free energy of solvation -71.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds