Wall clock time and date at job start Wed Apr 1 2020 04:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09013 * 109.46847 * 2 1 4 4 C 1.50696 * 109.46954 * 240.00296 * 2 1 3 5 5 O 1.21287 * 119.99669 * 239.99240 * 4 2 1 6 6 N 1.34777 * 120.00417 * 60.00337 * 4 2 1 7 7 C 1.47199 * 126.70005 * 359.67511 * 6 4 2 8 8 C 1.54034 * 106.26369 * 148.64194 * 7 6 4 9 9 C 1.53001 * 112.77318 * 141.67694 * 8 7 6 10 10 C 1.56817 * 109.45009 * 268.28686 * 8 7 6 11 11 N 1.48111 * 105.10238 * 88.54223 * 10 8 7 12 12 C 1.36938 * 127.84525 * 219.46101 * 11 10 8 13 13 H 1.08000 * 119.99711 * 15.65982 * 12 11 10 14 14 C 1.38809 * 120.00225 * 195.65939 * 12 11 10 15 15 N 1.31619 * 120.00179 * 9.11562 * 14 12 11 16 16 Si 1.86799 * 120.00103 * 189.11791 * 14 12 11 17 17 H 1.48500 * 109.47018 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46853 * 119.99941 * 16 14 12 19 19 H 1.48501 * 109.47116 * 239.99790 * 16 14 12 20 20 C 1.48116 * 104.31203 * 39.46244 * 11 10 8 21 21 C 1.54316 * 104.71058 * 320.22419 * 20 11 10 22 22 C 1.53000 * 112.07168 * 146.94444 * 21 20 11 23 23 C 1.47194 * 126.70470 * 180.02562 * 6 4 2 24 24 C 1.50696 * 109.47098 * 119.99870 * 2 1 3 25 25 C 1.35316 * 126.12997 * 85.02798 * 24 2 1 26 26 C 1.39860 * 107.92434 * 179.75840 * 25 24 2 27 27 N 1.30840 * 108.20313 * 0.24295 * 26 25 24 28 28 N 1.34955 * 126.12819 * 265.20027 * 24 2 1 29 29 C 1.46498 * 126.03479 * 0.02562 * 28 24 2 30 30 H 1.08999 * 109.47059 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47203 * 300.00111 * 1 2 3 32 32 H 1.09001 * 109.47490 * 60.00129 * 1 2 3 33 33 H 1.09000 * 110.07280 * 267.95443 * 7 6 4 34 34 H 1.09004 * 110.06807 * 29.48705 * 7 6 4 35 35 H 1.08998 * 109.46931 * 301.38018 * 9 8 7 36 36 H 1.09003 * 109.46949 * 61.38255 * 9 8 7 37 37 H 1.09003 * 109.47082 * 181.38065 * 9 8 7 38 38 H 1.08996 * 110.47408 * 329.46723 * 10 8 7 39 39 H 1.09004 * 110.02653 * 207.38647 * 10 8 7 40 40 H 0.96997 * 120.00729 * 179.97438 * 15 14 12 41 41 H 1.08995 * 110.38825 * 201.41880 * 20 11 10 42 42 H 1.08995 * 110.38791 * 79.03024 * 20 11 10 43 43 H 1.09005 * 109.47251 * 182.00953 * 22 21 20 44 44 H 1.09001 * 109.47563 * 302.00833 * 22 21 20 45 45 H 1.09000 * 109.47234 * 62.01129 * 22 21 20 46 46 H 1.09005 * 110.07063 * 330.52259 * 23 6 4 47 47 H 1.09000 * 110.07504 * 91.99541 * 23 6 4 48 48 H 1.08002 * 126.03223 * 0.02562 * 25 24 2 49 49 H 1.08002 * 125.90433 * 180.21931 * 26 25 24 50 50 H 1.09005 * 109.46658 * 270.25042 * 29 28 24 51 51 H 1.08991 * 109.47849 * 30.25455 * 29 28 24 52 52 H 1.09002 * 109.47114 * 150.25771 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.7297 -1.6964 -1.1192 6 7 1.7068 -0.2498 -2.4546 7 6 0.8700 0.9221 -2.7598 8 6 1.4055 1.5018 -4.0826 9 6 0.2918 2.0105 -5.0001 10 6 2.4889 2.5927 -3.7741 11 7 3.7690 1.8523 -3.6900 12 6 4.7997 2.0534 -2.8112 13 1 4.6419 2.6418 -1.9194 14 6 6.0473 1.5010 -3.0665 15 7 6.2923 0.9387 -4.2310 16 14 7.3785 1.5554 -1.7572 17 1 6.8541 2.2362 -0.5461 18 1 7.7866 0.1708 -1.4084 19 1 8.5528 2.3018 -2.2760 20 6 3.6811 0.8451 -4.7724 21 6 2.2193 0.3523 -4.7314 22 6 1.6963 -0.0125 -6.1222 23 6 2.1126 -0.8247 -3.7474 24 6 2.0323 -0.7104 1.2304 25 6 2.2089 -2.0452 1.3649 26 6 2.6928 -2.2876 2.6545 27 7 2.7978 -1.1401 3.2741 28 7 2.3835 -0.1295 2.3969 29 6 2.3435 1.3049 2.6918 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.1706 0.6189 -2.8756 34 1 0.9582 1.6621 -1.9642 35 1 -0.3949 1.1944 -5.2249 36 1 -0.2501 2.8147 -4.5023 37 1 0.7270 2.3848 -5.9267 38 1 2.2733 3.0870 -2.8269 39 1 2.5247 3.3225 -4.5829 40 1 7.1641 0.5530 -4.4096 41 1 4.3658 0.0193 -4.5792 42 1 3.9003 1.3037 -5.7366 43 1 0.6531 -0.3199 -6.0490 44 1 1.7744 0.8542 -6.7787 45 1 2.2888 -0.8316 -6.5299 46 1 3.0790 -1.3195 -3.6499 47 1 1.3620 -1.5356 -4.0929 48 1 2.0150 -2.7911 0.6082 49 1 2.9372 -3.2551 3.0678 50 1 3.2974 1.7580 2.4220 51 1 1.5439 1.7719 2.1169 52 1 2.1595 1.4520 3.7560 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982282090.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:48 Heat of formation + Delta-G solvation = 82.934624 kcal Electronic energy + Delta-G solvation = -33360.418902 eV Core-core repulsion = 29362.887099 eV Total energy + Delta-G solvation = -3997.531803 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.24720 -40.29608 -38.32690 -34.75472 -34.15931 -33.00542 -32.77225 -31.59561 -30.74710 -28.96454 -26.85152 -26.59299 -26.02495 -25.80858 -24.86481 -24.20147 -22.15250 -21.07266 -20.21261 -20.01511 -18.74770 -17.81850 -16.98632 -16.77603 -15.96984 -15.61722 -15.35531 -15.12771 -14.65067 -14.46809 -14.06557 -13.89043 -13.61027 -13.47981 -13.39046 -13.27465 -13.11842 -12.88462 -12.69448 -12.44046 -12.33288 -12.29109 -11.97842 -11.78781 -11.68952 -11.55896 -11.43941 -11.39013 -11.23255 -10.85389 -10.82074 -10.61023 -10.44250 -10.12786 -10.04413 -9.79122 -9.69824 -9.55318 -9.34747 -9.07454 -8.69873 -8.21869 -8.16692 -6.83372 -5.79585 -3.13037 2.01403 2.61351 2.99967 3.12592 3.38392 3.42698 3.44601 3.47702 4.42849 4.46118 4.59681 4.69344 4.77656 4.97712 5.03974 5.06812 5.17473 5.22272 5.30556 5.39134 5.43038 5.44698 5.51344 5.52220 5.55722 5.64968 5.66036 5.69746 5.86045 5.88008 5.94689 6.01258 6.03289 6.07202 6.11656 6.15623 6.25324 6.30119 6.44114 6.48239 6.49333 6.60146 6.65137 6.79273 6.90562 6.92607 7.16792 7.28943 7.52943 7.71183 7.89455 7.98289 8.21207 8.58459 9.10522 9.74687 10.50481 11.34317 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009102 B = 0.005272 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3075.394283 B = 5309.914375 C = 7069.966264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.042 4.042 3 H 0.105 0.895 4 C 0.547 3.453 5 O -0.526 6.526 6 N -0.595 5.595 7 C 0.121 3.879 8 C -0.092 4.092 9 C -0.122 4.122 10 C 0.142 3.858 11 N -0.588 5.588 12 C -0.222 4.222 13 H 0.070 0.930 14 C 0.001 3.999 15 N -0.912 5.912 16 Si 0.904 3.096 17 H -0.281 1.281 18 H -0.289 1.289 19 H -0.290 1.290 20 C 0.172 3.828 21 C -0.097 4.097 22 C -0.123 4.123 23 C 0.130 3.870 24 C 0.094 3.906 25 C -0.230 4.230 26 C 0.038 3.962 27 N -0.302 5.302 28 N -0.373 5.373 29 C 0.099 3.901 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.055 0.945 36 H 0.051 0.949 37 H 0.061 0.939 38 H 0.042 0.958 39 H 0.023 0.977 40 H 0.253 0.747 41 H 0.087 0.913 42 H 0.021 0.979 43 H 0.050 0.950 44 H 0.059 0.941 45 H 0.054 0.946 46 H 0.080 0.920 47 H 0.052 0.948 48 H 0.153 0.847 49 H 0.180 0.820 50 H 0.075 0.925 51 H 0.084 0.916 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.619 0.093 3.782 17.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.066 4.066 3 H 0.123 0.877 4 C 0.334 3.666 5 O -0.402 6.402 6 N -0.327 5.327 7 C -0.003 4.003 8 C -0.095 4.095 9 C -0.180 4.180 10 C 0.015 3.985 11 N -0.310 5.310 12 C -0.350 4.350 13 H 0.088 0.912 14 C -0.197 4.197 15 N -0.558 5.558 16 Si 0.735 3.265 17 H -0.206 1.206 18 H -0.215 1.215 19 H -0.217 1.217 20 C 0.046 3.954 21 C -0.100 4.100 22 C -0.181 4.181 23 C 0.007 3.993 24 C -0.033 4.033 25 C -0.258 4.258 26 C -0.147 4.147 27 N -0.124 5.124 28 N -0.157 5.157 29 C -0.043 4.043 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.061 0.939 39 H 0.041 0.959 40 H 0.063 0.937 41 H 0.105 0.895 42 H 0.039 0.961 43 H 0.069 0.931 44 H 0.078 0.922 45 H 0.073 0.927 46 H 0.099 0.901 47 H 0.071 0.929 48 H 0.171 0.829 49 H 0.197 0.803 50 H 0.093 0.907 51 H 0.102 0.898 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -15.593 0.214 5.148 16.422 hybrid contribution 0.761 -0.184 -0.134 0.794 sum -14.832 0.031 5.014 15.656 Atomic orbital electron populations 1.21887 0.91610 1.03483 1.03030 1.19678 0.97436 1.00096 0.89351 0.87717 1.19379 0.80056 0.84449 0.82710 1.90715 1.37368 1.26684 1.85463 1.48012 1.50526 1.29200 1.05003 1.22135 0.93149 0.87703 0.97272 1.22878 0.95632 0.97378 0.93610 1.21594 0.97021 1.00281 0.99109 1.22094 0.86681 0.91966 0.97770 1.44720 1.14707 1.34860 1.36718 1.18837 0.87388 1.29777 0.98990 0.91175 1.24792 0.96893 1.01422 0.96574 1.69871 1.22142 1.43037 1.20732 0.86177 0.81972 0.77517 0.80854 1.20625 1.21529 1.21687 1.21613 0.89272 0.93881 0.90615 1.22567 1.00057 0.93658 0.93686 1.21633 0.99682 1.01341 0.95453 1.21977 1.00470 0.95123 0.81700 1.20272 1.01526 0.93526 0.87939 1.21375 1.11514 0.95036 0.97923 1.23812 0.99947 0.96899 0.94062 1.77276 1.22525 0.95818 1.16754 1.48353 1.51281 1.06722 1.09342 1.21827 1.03364 0.75741 1.03354 0.91485 0.91752 0.90634 0.92148 0.91129 0.92636 0.92968 0.91958 0.93948 0.95910 0.93662 0.89469 0.96142 0.93131 0.92224 0.92699 0.90108 0.92943 0.82947 0.80274 0.90654 0.89751 0.89397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 8.94 37.16 0.33 -1.17 16 2 C -0.04 -0.62 2.06 -92.93 -0.19 -0.81 16 3 H 0.10 1.48 7.23 -51.92 -0.38 1.11 16 4 C 0.55 9.96 7.17 -10.99 -0.08 9.88 16 5 O -0.53 -11.56 13.97 5.55 0.08 -11.48 16 6 N -0.60 -10.01 3.31 -171.45 -0.57 -10.58 16 7 C 0.12 1.63 4.31 -3.12 -0.01 1.62 16 8 C -0.09 -1.36 1.15 -150.81 -0.17 -1.53 16 9 C -0.12 -1.37 7.65 37.16 0.28 -1.08 16 10 C 0.14 2.66 6.37 -1.09 -0.01 2.65 16 11 N -0.59 -14.03 3.38 -167.41 -0.57 -14.60 16 12 C -0.22 -6.02 10.35 -15.06 -0.16 -6.18 16 13 H 0.07 1.87 7.85 -52.49 -0.41 1.46 16 14 C 0.00 0.02 5.40 -17.43 -0.09 -0.08 16 15 N -0.91 -26.73 10.87 55.49 0.60 -26.12 16 16 Si 0.90 22.91 29.56 -169.99 -5.03 17.89 16 17 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 19 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 20 C 0.17 3.89 4.91 -2.46 -0.01 3.87 16 21 C -0.10 -1.63 1.06 -152.32 -0.16 -1.79 16 22 C -0.12 -1.67 7.50 37.16 0.28 -1.39 16 23 C 0.13 2.28 6.08 -3.26 -0.02 2.26 16 24 C 0.09 1.53 5.73 -82.26 -0.47 1.06 16 25 C -0.23 -3.85 9.14 -40.02 -0.37 -4.21 16 26 C 0.04 0.59 12.02 -17.37 -0.21 0.38 16 27 N -0.30 -5.05 12.58 30.62 0.39 -4.67 16 28 N -0.37 -5.80 4.01 -63.89 -0.26 -6.06 16 29 C 0.10 1.11 11.06 59.85 0.66 1.77 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.70 5.15 -51.93 -0.27 0.43 16 33 H 0.06 0.66 7.33 -51.93 -0.38 0.28 16 34 H 0.07 0.91 6.22 -51.93 -0.32 0.58 16 35 H 0.05 0.55 7.09 -51.93 -0.37 0.18 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.72 7.17 -51.93 -0.37 0.35 16 38 H 0.04 0.76 7.53 -51.93 -0.39 0.37 16 39 H 0.02 0.44 8.00 -51.93 -0.42 0.02 16 40 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 41 H 0.09 2.31 5.79 -51.93 -0.30 2.01 16 42 H 0.02 0.49 7.97 -51.93 -0.41 0.08 16 43 H 0.05 0.57 7.10 -51.93 -0.37 0.20 16 44 H 0.06 0.79 7.16 -51.93 -0.37 0.41 16 45 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.08 1.72 7.14 -51.93 -0.37 1.35 16 47 H 0.05 0.80 7.89 -51.93 -0.41 0.39 16 48 H 0.15 2.61 6.80 -52.49 -0.36 2.25 16 49 H 0.18 2.14 8.06 -52.49 -0.42 1.72 16 50 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 51 H 0.08 0.73 7.56 -51.93 -0.39 0.33 16 52 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 396.08 15.07 5.97 5.97 Total: -1.00 -34.66 396.08 -8.16 -42.82 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -8.38 Total: 1.59 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: -0.40 Total: 5.25 kcal Atomic # 7 Polarization: -61.63 SS G_CDS: -0.40 Total: -62.03 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.08 Total: -11.48 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.03 Total: 17.89 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.66 -8.16 -42.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982282090.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.758 kcal (2) G-P(sol) polarization free energy of solvation -34.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds