Wall clock time and date at job start Wed Apr 1 2020 04:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09013 * 109.46847 * 2 1 4 4 C 1.50696 * 109.46954 * 240.00296 * 2 1 3 5 5 O 1.21287 * 119.99669 * 239.99240 * 4 2 1 6 6 N 1.34777 * 120.00417 * 60.00337 * 4 2 1 7 7 C 1.47199 * 126.70005 * 359.67511 * 6 4 2 8 8 C 1.54034 * 106.26369 * 148.64194 * 7 6 4 9 9 C 1.53001 * 112.77318 * 141.67694 * 8 7 6 10 10 C 1.56817 * 109.45009 * 268.28686 * 8 7 6 11 11 N 1.48111 * 105.10238 * 88.54223 * 10 8 7 12 12 C 1.36938 * 127.84525 * 219.46101 * 11 10 8 13 13 H 1.08000 * 119.99711 * 15.65982 * 12 11 10 14 14 C 1.38809 * 120.00225 * 195.65939 * 12 11 10 15 15 N 1.31619 * 120.00179 * 9.11562 * 14 12 11 16 16 Si 1.86799 * 120.00103 * 189.11791 * 14 12 11 17 17 H 1.48500 * 109.47018 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46853 * 119.99941 * 16 14 12 19 19 H 1.48501 * 109.47116 * 239.99790 * 16 14 12 20 20 C 1.48116 * 104.31203 * 39.46244 * 11 10 8 21 21 C 1.54316 * 104.71058 * 320.22419 * 20 11 10 22 22 C 1.53000 * 112.07168 * 146.94444 * 21 20 11 23 23 C 1.47194 * 126.70470 * 180.02562 * 6 4 2 24 24 C 1.50696 * 109.47098 * 119.99870 * 2 1 3 25 25 C 1.35316 * 126.12997 * 85.02798 * 24 2 1 26 26 C 1.39860 * 107.92434 * 179.75840 * 25 24 2 27 27 N 1.30840 * 108.20313 * 0.24295 * 26 25 24 28 28 N 1.34955 * 126.12819 * 265.20027 * 24 2 1 29 29 C 1.46498 * 126.03479 * 0.02562 * 28 24 2 30 30 H 1.08999 * 109.47059 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47203 * 300.00111 * 1 2 3 32 32 H 1.09001 * 109.47490 * 60.00129 * 1 2 3 33 33 H 1.09000 * 110.07280 * 267.95443 * 7 6 4 34 34 H 1.09004 * 110.06807 * 29.48705 * 7 6 4 35 35 H 1.08998 * 109.46931 * 301.38018 * 9 8 7 36 36 H 1.09003 * 109.46949 * 61.38255 * 9 8 7 37 37 H 1.09003 * 109.47082 * 181.38065 * 9 8 7 38 38 H 1.08996 * 110.47408 * 329.46723 * 10 8 7 39 39 H 1.09004 * 110.02653 * 207.38647 * 10 8 7 40 40 H 0.96997 * 120.00729 * 179.97438 * 15 14 12 41 41 H 1.08995 * 110.38825 * 201.41880 * 20 11 10 42 42 H 1.08995 * 110.38791 * 79.03024 * 20 11 10 43 43 H 1.09005 * 109.47251 * 182.00953 * 22 21 20 44 44 H 1.09001 * 109.47563 * 302.00833 * 22 21 20 45 45 H 1.09000 * 109.47234 * 62.01129 * 22 21 20 46 46 H 1.09005 * 110.07063 * 330.52259 * 23 6 4 47 47 H 1.09000 * 110.07504 * 91.99541 * 23 6 4 48 48 H 1.08002 * 126.03223 * 0.02562 * 25 24 2 49 49 H 1.08002 * 125.90433 * 180.21931 * 26 25 24 50 50 H 1.09005 * 109.46658 * 270.25042 * 29 28 24 51 51 H 1.08991 * 109.47849 * 30.25455 * 29 28 24 52 52 H 1.09002 * 109.47114 * 150.25771 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.7297 -1.6964 -1.1192 6 7 1.7068 -0.2498 -2.4546 7 6 0.8700 0.9221 -2.7598 8 6 1.4055 1.5018 -4.0826 9 6 0.2918 2.0105 -5.0001 10 6 2.4889 2.5927 -3.7741 11 7 3.7690 1.8523 -3.6900 12 6 4.7997 2.0534 -2.8112 13 1 4.6419 2.6418 -1.9194 14 6 6.0473 1.5010 -3.0665 15 7 6.2923 0.9387 -4.2310 16 14 7.3785 1.5554 -1.7572 17 1 6.8541 2.2362 -0.5461 18 1 7.7866 0.1708 -1.4084 19 1 8.5528 2.3018 -2.2760 20 6 3.6811 0.8451 -4.7724 21 6 2.2193 0.3523 -4.7314 22 6 1.6963 -0.0125 -6.1222 23 6 2.1126 -0.8247 -3.7474 24 6 2.0323 -0.7104 1.2304 25 6 2.2089 -2.0452 1.3649 26 6 2.6928 -2.2876 2.6545 27 7 2.7978 -1.1401 3.2741 28 7 2.3835 -0.1295 2.3969 29 6 2.3435 1.3049 2.6918 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.1706 0.6189 -2.8756 34 1 0.9582 1.6621 -1.9642 35 1 -0.3949 1.1944 -5.2249 36 1 -0.2501 2.8147 -4.5023 37 1 0.7270 2.3848 -5.9267 38 1 2.2733 3.0870 -2.8269 39 1 2.5247 3.3225 -4.5829 40 1 7.1641 0.5530 -4.4096 41 1 4.3658 0.0193 -4.5792 42 1 3.9003 1.3037 -5.7366 43 1 0.6531 -0.3199 -6.0490 44 1 1.7744 0.8542 -6.7787 45 1 2.2888 -0.8316 -6.5299 46 1 3.0790 -1.3195 -3.6499 47 1 1.3620 -1.5356 -4.0929 48 1 2.0150 -2.7911 0.6082 49 1 2.9372 -3.2551 3.0678 50 1 3.2974 1.7580 2.4220 51 1 1.5439 1.7719 2.1169 52 1 2.1595 1.4520 3.7560 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982282090.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:45 Heat of formation + Delta-G solvation = 59.978593 kcal Electronic energy + Delta-G solvation = -33361.414350 eV Core-core repulsion = 29362.887099 eV Total energy + Delta-G solvation = -3998.527251 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.44940 -41.62507 -39.73801 -36.39519 -35.41907 -34.48961 -33.89963 -32.93351 -32.47394 -30.10674 -28.26169 -27.67884 -27.59546 -26.91131 -26.38374 -25.33446 -23.79960 -22.29137 -21.62395 -21.32854 -20.01461 -19.19613 -18.72301 -18.10403 -17.29509 -16.94899 -16.80945 -16.47272 -16.27360 -15.68104 -15.53763 -15.26045 -14.89724 -14.84100 -14.66531 -14.42893 -14.30365 -14.12565 -13.87267 -13.60486 -13.58241 -13.35334 -13.24689 -13.14620 -13.00385 -12.90633 -12.82575 -12.74228 -12.52644 -12.40249 -12.29889 -12.06875 -11.94975 -11.72695 -11.65531 -11.45310 -11.04723 -11.03330 -10.78011 -10.69321 -10.24539 -9.54882 -9.42671 -8.80900 -7.94443 -5.25400 0.81534 1.30122 1.35762 1.40405 1.53060 1.66639 1.88500 2.19023 2.39838 3.26381 3.28571 3.43992 3.57268 3.70067 3.72791 3.82249 3.89948 4.01490 4.11117 4.24836 4.31254 4.36258 4.37985 4.47374 4.60020 4.63655 4.66382 4.67475 4.72966 4.79246 4.84553 4.85595 4.89508 4.93310 4.96126 5.02485 5.11142 5.18084 5.22244 5.28292 5.29026 5.36678 5.38618 5.46802 5.48650 5.52656 5.67059 5.72769 5.84678 6.05143 6.19832 6.67984 6.70099 7.01408 7.23174 7.71358 8.48646 9.18858 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009102 B = 0.005272 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3075.394283 B = 5309.914375 C = 7069.966264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.033 4.033 3 H 0.112 0.888 4 C 0.534 3.466 5 O -0.579 6.579 6 N -0.598 5.598 7 C 0.115 3.885 8 C -0.075 4.075 9 C -0.117 4.117 10 C 0.134 3.866 11 N -0.611 5.611 12 C -0.213 4.213 13 H 0.075 0.925 14 C -0.060 4.060 15 N -0.943 5.943 16 Si 0.952 3.048 17 H -0.266 1.266 18 H -0.309 1.309 19 H -0.286 1.286 20 C 0.178 3.822 21 C -0.087 4.087 22 C -0.117 4.117 23 C 0.131 3.869 24 C 0.088 3.912 25 C -0.255 4.255 26 C 0.034 3.966 27 N -0.327 5.327 28 N -0.376 5.376 29 C 0.087 3.913 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.108 0.892 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.057 0.943 38 H 0.054 0.946 39 H 0.023 0.977 40 H 0.244 0.756 41 H 0.035 0.965 42 H -0.005 1.005 43 H 0.089 0.911 44 H 0.065 0.935 45 H 0.045 0.955 46 H 0.025 0.975 47 H 0.084 0.916 48 H 0.140 0.860 49 H 0.206 0.794 50 H 0.068 0.932 51 H 0.115 0.885 52 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.067 2.032 4.215 21.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.056 4.056 3 H 0.130 0.870 4 C 0.322 3.678 5 O -0.459 6.459 6 N -0.329 5.329 7 C -0.007 4.007 8 C -0.078 4.078 9 C -0.174 4.174 10 C 0.008 3.992 11 N -0.333 5.333 12 C -0.342 4.342 13 H 0.092 0.908 14 C -0.254 4.254 15 N -0.592 5.592 16 Si 0.783 3.217 17 H -0.191 1.191 18 H -0.237 1.237 19 H -0.213 1.213 20 C 0.052 3.948 21 C -0.089 4.089 22 C -0.175 4.175 23 C 0.008 3.992 24 C -0.040 4.040 25 C -0.284 4.284 26 C -0.150 4.150 27 N -0.149 5.149 28 N -0.160 5.160 29 C -0.053 4.053 30 H 0.080 0.920 31 H 0.106 0.894 32 H 0.116 0.884 33 H 0.126 0.874 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.040 0.960 40 H 0.053 0.947 41 H 0.054 0.946 42 H 0.013 0.987 43 H 0.107 0.893 44 H 0.084 0.916 45 H 0.064 0.936 46 H 0.044 0.956 47 H 0.102 0.898 48 H 0.157 0.843 49 H 0.223 0.777 50 H 0.087 0.913 51 H 0.134 0.866 52 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -20.103 2.226 5.582 20.982 hybrid contribution 2.166 -0.743 -0.309 2.310 sum -17.937 1.483 5.273 18.755 Atomic orbital electron populations 1.21900 0.87984 1.03913 1.05243 1.19724 1.00177 0.99168 0.86541 0.86989 1.20153 0.79411 0.84154 0.84062 1.90693 1.39722 1.29176 1.86340 1.48163 1.50447 1.29980 1.04280 1.22491 0.94638 0.86749 0.96772 1.22855 0.95343 0.94550 0.95024 1.21612 0.95819 1.01989 0.98015 1.22384 0.85359 0.93016 0.98415 1.44952 1.15844 1.36318 1.36233 1.19151 0.88080 1.27721 0.99265 0.90760 1.25432 0.99031 1.02789 0.98112 1.70050 1.21852 1.44944 1.22325 0.85390 0.80347 0.76310 0.79685 1.19060 1.23692 1.21294 1.21392 0.92477 0.91908 0.89025 1.22422 0.96374 0.94234 0.95884 1.21630 1.01533 1.01383 0.92961 1.21906 0.98717 0.95809 0.82815 1.20583 1.01071 0.93670 0.88714 1.21439 1.13092 0.95601 0.98303 1.24251 0.99229 0.97873 0.93655 1.77213 1.23440 0.96449 1.17781 1.48680 1.50502 1.07916 1.08882 1.22198 1.04252 0.73584 1.05231 0.92007 0.89414 0.88420 0.87409 0.89711 0.89915 0.90435 0.92404 0.92765 0.95959 0.94693 0.94637 0.98709 0.89273 0.91639 0.93613 0.95605 0.89839 0.84269 0.77741 0.91292 0.86641 0.87640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 8.94 71.98 0.64 -1.61 16 2 C -0.03 -0.89 2.06 -12.29 -0.03 -0.92 16 3 H 0.11 2.84 7.23 -2.38 -0.02 2.82 16 4 C 0.53 19.23 7.17 87.66 0.63 19.86 16 5 O -0.58 -26.63 13.97 -3.05 -0.04 -26.67 16 6 N -0.60 -19.08 3.31 -814.72 -2.70 -21.77 16 7 C 0.12 2.55 4.31 86.60 0.37 2.93 16 8 C -0.08 -1.93 1.15 -49.79 -0.06 -1.99 16 9 C -0.12 -1.90 7.65 71.98 0.55 -1.35 16 10 C 0.13 4.71 6.37 87.41 0.56 5.27 16 11 N -0.61 -29.54 3.38 -683.58 -2.31 -31.85 16 12 C -0.21 -11.78 10.35 84.03 0.87 -10.91 16 13 H 0.07 3.96 7.85 -2.91 -0.02 3.94 16 14 C -0.06 -3.53 5.40 84.86 0.46 -3.07 16 15 N -0.94 -58.70 10.87 21.65 0.24 -58.47 16 16 Si 0.95 48.88 29.56 68.60 2.03 50.91 16 17 H -0.27 -12.82 7.11 99.48 0.71 -12.12 16 18 H -0.31 -16.71 7.11 99.48 0.71 -16.00 16 19 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 20 C 0.18 8.37 4.91 86.52 0.42 8.79 16 21 C -0.09 -2.80 1.06 -50.76 -0.05 -2.86 16 22 C -0.12 -2.86 7.50 71.98 0.54 -2.32 16 23 C 0.13 4.54 6.08 86.51 0.53 5.06 16 24 C 0.09 2.78 5.73 41.40 0.24 3.01 16 25 C -0.26 -8.73 9.14 21.99 0.20 -8.53 16 26 C 0.03 1.07 12.02 85.23 1.02 2.10 16 27 N -0.33 -10.79 12.58 -57.03 -0.72 -11.51 16 28 N -0.38 -11.24 4.01 -356.04 -1.43 -12.67 16 29 C 0.09 1.75 11.06 127.77 1.41 3.17 16 30 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.10 1.22 5.15 -2.39 -0.01 1.20 16 33 H 0.11 1.52 7.33 -2.39 -0.02 1.51 16 34 H 0.08 1.70 6.22 -2.38 -0.01 1.69 16 35 H 0.08 0.98 7.09 -2.39 -0.02 0.97 16 36 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.06 1.04 7.17 -2.39 -0.02 1.02 16 38 H 0.05 1.77 7.53 -2.39 -0.02 1.75 16 39 H 0.02 0.80 8.00 -2.38 -0.02 0.79 16 40 H 0.24 14.97 8.31 -92.71 -0.77 14.20 16 41 H 0.04 2.03 5.79 -2.39 -0.01 2.01 16 42 H -0.01 -0.25 7.97 -2.39 -0.02 -0.27 16 43 H 0.09 1.54 7.10 -2.38 -0.02 1.52 16 44 H 0.06 1.54 7.16 -2.39 -0.02 1.53 16 45 H 0.04 1.19 8.14 -2.39 -0.02 1.18 16 46 H 0.03 1.17 7.14 -2.38 -0.02 1.15 16 47 H 0.08 2.38 7.89 -2.39 -0.02 2.36 16 48 H 0.14 5.04 6.80 -2.91 -0.02 5.02 16 49 H 0.21 4.89 8.06 -2.91 -0.02 4.86 16 50 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 51 H 0.12 1.55 7.56 -2.39 -0.02 1.53 16 52 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -84.30 396.08 4.29 -80.01 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: 0.91 Total: 15.37 kcal Atomic # 6 Polarization: 8.33 SS G_CDS: 8.31 Total: 16.64 kcal Atomic # 7 Polarization: -129.35 SS G_CDS: -6.92 Total: -136.27 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: -0.04 Total: -26.67 kcal Atomic # 14 Polarization: 48.88 SS G_CDS: 2.03 Total: 50.91 kcal Total: -84.30 4.29 -80.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982282090.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.994 kcal (2) G-P(sol) polarization free energy of solvation -84.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds