Wall clock time and date at job start Wed Apr 1 2020 04:05:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09013 * 109.46847 * 2 1
4 4 C 1.50696 * 109.46954 * 240.00296 * 2 1 3
5 5 O 1.21287 * 119.99669 * 239.99240 * 4 2 1
6 6 N 1.34777 * 120.00417 * 60.00337 * 4 2 1
7 7 C 1.47199 * 126.70005 * 359.67511 * 6 4 2
8 8 C 1.54034 * 106.26369 * 148.64194 * 7 6 4
9 9 C 1.53001 * 112.77318 * 141.67694 * 8 7 6
10 10 C 1.56817 * 109.45009 * 268.28686 * 8 7 6
11 11 N 1.48111 * 105.10238 * 88.54223 * 10 8 7
12 12 C 1.36938 * 127.84525 * 219.46101 * 11 10 8
13 13 H 1.08000 * 119.99711 * 15.65982 * 12 11 10
14 14 C 1.38809 * 120.00225 * 195.65939 * 12 11 10
15 15 N 1.31619 * 120.00179 * 9.11562 * 14 12 11
16 16 Si 1.86799 * 120.00103 * 189.11791 * 14 12 11
17 17 H 1.48500 * 109.47018 * 0.02562 * 16 14 12
18 18 H 1.48503 * 109.46853 * 119.99941 * 16 14 12
19 19 H 1.48501 * 109.47116 * 239.99790 * 16 14 12
20 20 C 1.48116 * 104.31203 * 39.46244 * 11 10 8
21 21 C 1.54316 * 104.71058 * 320.22419 * 20 11 10
22 22 C 1.53000 * 112.07168 * 146.94444 * 21 20 11
23 23 C 1.47194 * 126.70470 * 180.02562 * 6 4 2
24 24 C 1.50696 * 109.47098 * 119.99870 * 2 1 3
25 25 C 1.35316 * 126.12997 * 85.02798 * 24 2 1
26 26 C 1.39860 * 107.92434 * 179.75840 * 25 24 2
27 27 N 1.30840 * 108.20313 * 0.24295 * 26 25 24
28 28 N 1.34955 * 126.12819 * 265.20027 * 24 2 1
29 29 C 1.46498 * 126.03479 * 0.02562 * 28 24 2
30 30 H 1.08999 * 109.47059 * 180.02562 * 1 2 3
31 31 H 1.08999 * 109.47203 * 300.00111 * 1 2 3
32 32 H 1.09001 * 109.47490 * 60.00129 * 1 2 3
33 33 H 1.09000 * 110.07280 * 267.95443 * 7 6 4
34 34 H 1.09004 * 110.06807 * 29.48705 * 7 6 4
35 35 H 1.08998 * 109.46931 * 301.38018 * 9 8 7
36 36 H 1.09003 * 109.46949 * 61.38255 * 9 8 7
37 37 H 1.09003 * 109.47082 * 181.38065 * 9 8 7
38 38 H 1.08996 * 110.47408 * 329.46723 * 10 8 7
39 39 H 1.09004 * 110.02653 * 207.38647 * 10 8 7
40 40 H 0.96997 * 120.00729 * 179.97438 * 15 14 12
41 41 H 1.08995 * 110.38825 * 201.41880 * 20 11 10
42 42 H 1.08995 * 110.38791 * 79.03024 * 20 11 10
43 43 H 1.09005 * 109.47251 * 182.00953 * 22 21 20
44 44 H 1.09001 * 109.47563 * 302.00833 * 22 21 20
45 45 H 1.09000 * 109.47234 * 62.01129 * 22 21 20
46 46 H 1.09005 * 110.07063 * 330.52259 * 23 6 4
47 47 H 1.09000 * 110.07504 * 91.99541 * 23 6 4
48 48 H 1.08002 * 126.03223 * 0.02562 * 25 24 2
49 49 H 1.08002 * 125.90433 * 180.21931 * 26 25 24
50 50 H 1.09005 * 109.46658 * 270.25042 * 29 28 24
51 51 H 1.08991 * 109.47849 * 30.25455 * 29 28 24
52 52 H 1.09002 * 109.47114 * 150.25771 * 29 28 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0278 0.0000
4 6 2.0323 -0.7103 -1.2305
5 8 2.7297 -1.6964 -1.1192
6 7 1.7068 -0.2498 -2.4546
7 6 0.8700 0.9221 -2.7598
8 6 1.4055 1.5018 -4.0826
9 6 0.2918 2.0105 -5.0001
10 6 2.4889 2.5927 -3.7741
11 7 3.7690 1.8523 -3.6900
12 6 4.7997 2.0534 -2.8112
13 1 4.6419 2.6418 -1.9194
14 6 6.0473 1.5010 -3.0665
15 7 6.2923 0.9387 -4.2310
16 14 7.3785 1.5554 -1.7572
17 1 6.8541 2.2362 -0.5461
18 1 7.7866 0.1708 -1.4084
19 1 8.5528 2.3018 -2.2760
20 6 3.6811 0.8451 -4.7724
21 6 2.2193 0.3523 -4.7314
22 6 1.6963 -0.0125 -6.1222
23 6 2.1126 -0.8247 -3.7474
24 6 2.0323 -0.7104 1.2304
25 6 2.2089 -2.0452 1.3649
26 6 2.6928 -2.2876 2.6545
27 7 2.7978 -1.1401 3.2741
28 7 2.3835 -0.1295 2.3969
29 6 2.3435 1.3049 2.6918
30 1 -0.3633 -1.0277 0.0005
31 1 -0.3633 0.5138 0.8900
32 1 -0.3634 0.5138 -0.8900
33 1 -0.1706 0.6189 -2.8756
34 1 0.9582 1.6621 -1.9642
35 1 -0.3949 1.1944 -5.2249
36 1 -0.2501 2.8147 -4.5023
37 1 0.7270 2.3848 -5.9267
38 1 2.2733 3.0870 -2.8269
39 1 2.5247 3.3225 -4.5829
40 1 7.1641 0.5530 -4.4096
41 1 4.3658 0.0193 -4.5792
42 1 3.9003 1.3037 -5.7366
43 1 0.6531 -0.3199 -6.0490
44 1 1.7744 0.8542 -6.7787
45 1 2.2888 -0.8316 -6.5299
46 1 3.0790 -1.3195 -3.6499
47 1 1.3620 -1.5356 -4.0929
48 1 2.0150 -2.7911 0.6082
49 1 2.9372 -3.2551 3.0678
50 1 3.2974 1.7580 2.4220
51 1 1.5439 1.7719 2.1169
52 1 2.1595 1.4520 3.7560
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000982282090.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:05:45
Heat of formation + Delta-G solvation = 59.978593 kcal
Electronic energy + Delta-G solvation = -33361.414350 eV
Core-core repulsion = 29362.887099 eV
Total energy + Delta-G solvation = -3998.527251 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 346.211 amu
Computer time = 1.33 seconds
Orbital eigenvalues (eV)
-42.44940 -41.62507 -39.73801 -36.39519 -35.41907 -34.48961 -33.89963 -32.93351
-32.47394 -30.10674 -28.26169 -27.67884 -27.59546 -26.91131 -26.38374 -25.33446
-23.79960 -22.29137 -21.62395 -21.32854 -20.01461 -19.19613 -18.72301 -18.10403
-17.29509 -16.94899 -16.80945 -16.47272 -16.27360 -15.68104 -15.53763 -15.26045
-14.89724 -14.84100 -14.66531 -14.42893 -14.30365 -14.12565 -13.87267 -13.60486
-13.58241 -13.35334 -13.24689 -13.14620 -13.00385 -12.90633 -12.82575 -12.74228
-12.52644 -12.40249 -12.29889 -12.06875 -11.94975 -11.72695 -11.65531 -11.45310
-11.04723 -11.03330 -10.78011 -10.69321 -10.24539 -9.54882 -9.42671 -8.80900
-7.94443 -5.25400 0.81534 1.30122 1.35762 1.40405 1.53060 1.66639
1.88500 2.19023 2.39838 3.26381 3.28571 3.43992 3.57268 3.70067
3.72791 3.82249 3.89948 4.01490 4.11117 4.24836 4.31254 4.36258
4.37985 4.47374 4.60020 4.63655 4.66382 4.67475 4.72966 4.79246
4.84553 4.85595 4.89508 4.93310 4.96126 5.02485 5.11142 5.18084
5.22244 5.28292 5.29026 5.36678 5.38618 5.46802 5.48650 5.52656
5.67059 5.72769 5.84678 6.05143 6.19832 6.67984 6.70099 7.01408
7.23174 7.71358 8.48646 9.18858
Molecular weight = 346.21amu
Principal moments of inertia in cm(-1)
A = 0.009102 B = 0.005272 C = 0.003959
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3075.394283 B = 5309.914375 C = 7069.966264
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C -0.033 4.033
3 H 0.112 0.888
4 C 0.534 3.466
5 O -0.579 6.579
6 N -0.598 5.598
7 C 0.115 3.885
8 C -0.075 4.075
9 C -0.117 4.117
10 C 0.134 3.866
11 N -0.611 5.611
12 C -0.213 4.213
13 H 0.075 0.925
14 C -0.060 4.060
15 N -0.943 5.943
16 Si 0.952 3.048
17 H -0.266 1.266
18 H -0.309 1.309
19 H -0.286 1.286
20 C 0.178 3.822
21 C -0.087 4.087
22 C -0.117 4.117
23 C 0.131 3.869
24 C 0.088 3.912
25 C -0.255 4.255
26 C 0.034 3.966
27 N -0.327 5.327
28 N -0.376 5.376
29 C 0.087 3.913
30 H 0.061 0.939
31 H 0.087 0.913
32 H 0.097 0.903
33 H 0.108 0.892
34 H 0.085 0.915
35 H 0.082 0.918
36 H 0.077 0.923
37 H 0.057 0.943
38 H 0.054 0.946
39 H 0.023 0.977
40 H 0.244 0.756
41 H 0.035 0.965
42 H -0.005 1.005
43 H 0.089 0.911
44 H 0.065 0.935
45 H 0.045 0.955
46 H 0.025 0.975
47 H 0.084 0.916
48 H 0.140 0.860
49 H 0.206 0.794
50 H 0.068 0.932
51 H 0.115 0.885
52 H 0.105 0.895
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.067 2.032 4.215 21.581
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.190 4.190
2 C -0.056 4.056
3 H 0.130 0.870
4 C 0.322 3.678
5 O -0.459 6.459
6 N -0.329 5.329
7 C -0.007 4.007
8 C -0.078 4.078
9 C -0.174 4.174
10 C 0.008 3.992
11 N -0.333 5.333
12 C -0.342 4.342
13 H 0.092 0.908
14 C -0.254 4.254
15 N -0.592 5.592
16 Si 0.783 3.217
17 H -0.191 1.191
18 H -0.237 1.237
19 H -0.213 1.213
20 C 0.052 3.948
21 C -0.089 4.089
22 C -0.175 4.175
23 C 0.008 3.992
24 C -0.040 4.040
25 C -0.284 4.284
26 C -0.150 4.150
27 N -0.149 5.149
28 N -0.160 5.160
29 C -0.053 4.053
30 H 0.080 0.920
31 H 0.106 0.894
32 H 0.116 0.884
33 H 0.126 0.874
34 H 0.103 0.897
35 H 0.101 0.899
36 H 0.096 0.904
37 H 0.076 0.924
38 H 0.072 0.928
39 H 0.040 0.960
40 H 0.053 0.947
41 H 0.054 0.946
42 H 0.013 0.987
43 H 0.107 0.893
44 H 0.084 0.916
45 H 0.064 0.936
46 H 0.044 0.956
47 H 0.102 0.898
48 H 0.157 0.843
49 H 0.223 0.777
50 H 0.087 0.913
51 H 0.134 0.866
52 H 0.124 0.876
Dipole moment (debyes) X Y Z Total
from point charges -20.103 2.226 5.582 20.982
hybrid contribution 2.166 -0.743 -0.309 2.310
sum -17.937 1.483 5.273 18.755
Atomic orbital electron populations
1.21900 0.87984 1.03913 1.05243 1.19724 1.00177 0.99168 0.86541
0.86989 1.20153 0.79411 0.84154 0.84062 1.90693 1.39722 1.29176
1.86340 1.48163 1.50447 1.29980 1.04280 1.22491 0.94638 0.86749
0.96772 1.22855 0.95343 0.94550 0.95024 1.21612 0.95819 1.01989
0.98015 1.22384 0.85359 0.93016 0.98415 1.44952 1.15844 1.36318
1.36233 1.19151 0.88080 1.27721 0.99265 0.90760 1.25432 0.99031
1.02789 0.98112 1.70050 1.21852 1.44944 1.22325 0.85390 0.80347
0.76310 0.79685 1.19060 1.23692 1.21294 1.21392 0.92477 0.91908
0.89025 1.22422 0.96374 0.94234 0.95884 1.21630 1.01533 1.01383
0.92961 1.21906 0.98717 0.95809 0.82815 1.20583 1.01071 0.93670
0.88714 1.21439 1.13092 0.95601 0.98303 1.24251 0.99229 0.97873
0.93655 1.77213 1.23440 0.96449 1.17781 1.48680 1.50502 1.07916
1.08882 1.22198 1.04252 0.73584 1.05231 0.92007 0.89414 0.88420
0.87409 0.89711 0.89915 0.90435 0.92404 0.92765 0.95959 0.94693
0.94637 0.98709 0.89273 0.91639 0.93613 0.95605 0.89839 0.84269
0.77741 0.91292 0.86641 0.87640
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.25 8.94 71.98 0.64 -1.61 16
2 C -0.03 -0.89 2.06 -12.29 -0.03 -0.92 16
3 H 0.11 2.84 7.23 -2.38 -0.02 2.82 16
4 C 0.53 19.23 7.17 87.66 0.63 19.86 16
5 O -0.58 -26.63 13.97 -3.05 -0.04 -26.67 16
6 N -0.60 -19.08 3.31 -814.72 -2.70 -21.77 16
7 C 0.12 2.55 4.31 86.60 0.37 2.93 16
8 C -0.08 -1.93 1.15 -49.79 -0.06 -1.99 16
9 C -0.12 -1.90 7.65 71.98 0.55 -1.35 16
10 C 0.13 4.71 6.37 87.41 0.56 5.27 16
11 N -0.61 -29.54 3.38 -683.58 -2.31 -31.85 16
12 C -0.21 -11.78 10.35 84.03 0.87 -10.91 16
13 H 0.07 3.96 7.85 -2.91 -0.02 3.94 16
14 C -0.06 -3.53 5.40 84.86 0.46 -3.07 16
15 N -0.94 -58.70 10.87 21.65 0.24 -58.47 16
16 Si 0.95 48.88 29.56 68.60 2.03 50.91 16
17 H -0.27 -12.82 7.11 99.48 0.71 -12.12 16
18 H -0.31 -16.71 7.11 99.48 0.71 -16.00 16
19 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16
20 C 0.18 8.37 4.91 86.52 0.42 8.79 16
21 C -0.09 -2.80 1.06 -50.76 -0.05 -2.86 16
22 C -0.12 -2.86 7.50 71.98 0.54 -2.32 16
23 C 0.13 4.54 6.08 86.51 0.53 5.06 16
24 C 0.09 2.78 5.73 41.40 0.24 3.01 16
25 C -0.26 -8.73 9.14 21.99 0.20 -8.53 16
26 C 0.03 1.07 12.02 85.23 1.02 2.10 16
27 N -0.33 -10.79 12.58 -57.03 -0.72 -11.51 16
28 N -0.38 -11.24 4.01 -356.04 -1.43 -12.67 16
29 C 0.09 1.75 11.06 127.77 1.41 3.17 16
30 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16
31 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16
32 H 0.10 1.22 5.15 -2.39 -0.01 1.20 16
33 H 0.11 1.52 7.33 -2.39 -0.02 1.51 16
34 H 0.08 1.70 6.22 -2.38 -0.01 1.69 16
35 H 0.08 0.98 7.09 -2.39 -0.02 0.97 16
36 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16
37 H 0.06 1.04 7.17 -2.39 -0.02 1.02 16
38 H 0.05 1.77 7.53 -2.39 -0.02 1.75 16
39 H 0.02 0.80 8.00 -2.38 -0.02 0.79 16
40 H 0.24 14.97 8.31 -92.71 -0.77 14.20 16
41 H 0.04 2.03 5.79 -2.39 -0.01 2.01 16
42 H -0.01 -0.25 7.97 -2.39 -0.02 -0.27 16
43 H 0.09 1.54 7.10 -2.38 -0.02 1.52 16
44 H 0.06 1.54 7.16 -2.39 -0.02 1.53 16
45 H 0.04 1.19 8.14 -2.39 -0.02 1.18 16
46 H 0.03 1.17 7.14 -2.38 -0.02 1.15 16
47 H 0.08 2.38 7.89 -2.39 -0.02 2.36 16
48 H 0.14 5.04 6.80 -2.91 -0.02 5.02 16
49 H 0.21 4.89 8.06 -2.91 -0.02 4.86 16
50 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16
51 H 0.12 1.55 7.56 -2.39 -0.02 1.53 16
52 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16
Total: -1.00 -84.30 396.08 4.29 -80.01
By element:
Atomic # 1 Polarization: 14.46 SS G_CDS: 0.91 Total: 15.37 kcal
Atomic # 6 Polarization: 8.33 SS G_CDS: 8.31 Total: 16.64 kcal
Atomic # 7 Polarization: -129.35 SS G_CDS: -6.92 Total: -136.27 kcal
Atomic # 8 Polarization: -26.63 SS G_CDS: -0.04 Total: -26.67 kcal
Atomic # 14 Polarization: 48.88 SS G_CDS: 2.03 Total: 50.91 kcal
Total: -84.30 4.29 -80.01 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000982282090.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 139.994 kcal
(2) G-P(sol) polarization free energy of solvation -84.304 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.690 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.289 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.015 kcal
(6) G-S(sol) free energy of system = (1) + (5) 59.979 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.33 seconds