Wall clock time and date at job start Wed Apr 1 2020 04:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47344 * 2 1 4 4 C 1.50703 * 109.47116 * 120.00286 * 2 1 3 5 5 O 1.21278 * 119.99940 * 119.99956 * 4 2 1 6 6 N 1.34778 * 119.99981 * 299.99748 * 4 2 1 7 7 C 1.48108 * 127.84076 * 0.02562 * 6 4 2 8 8 C 1.56820 * 104.74269 * 220.29319 * 7 6 4 9 9 C 1.53001 * 112.92962 * 96.97411 * 8 7 6 10 10 C 1.54055 * 109.10849 * 223.62831 * 8 7 6 11 11 N 1.47199 * 106.25467 * 129.74416 * 10 8 7 12 12 C 1.36940 * 126.70550 * 148.61119 * 11 10 8 13 13 H 1.07994 * 119.99666 * 345.37226 * 12 11 10 14 14 C 1.38804 * 120.00008 * 165.36887 * 12 11 10 15 15 N 1.31622 * 120.00247 * 350.70749 * 14 12 11 16 16 Si 1.86810 * 119.99877 * 170.70703 * 14 12 11 17 17 H 1.48499 * 109.47137 * 59.99982 * 16 14 12 18 18 H 1.48496 * 109.47053 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.46625 * 300.00079 * 16 14 12 20 20 C 1.47206 * 106.59281 * 328.35081 * 11 10 8 21 21 C 1.53757 * 106.40693 * 31.57100 * 20 11 10 22 22 C 1.52996 * 112.06948 * 103.41499 * 21 20 11 23 23 C 1.48107 * 127.84645 * 180.02562 * 6 4 2 24 24 C 1.50704 * 109.47177 * 240.00086 * 2 1 3 25 25 C 1.35320 * 126.12321 * 274.69137 * 24 2 1 26 26 C 1.39874 * 107.91718 * 179.90176 * 25 24 2 27 27 N 1.30835 * 108.20086 * 0.36578 * 26 25 24 28 28 N 1.34948 * 126.12742 * 94.99875 * 24 2 1 29 29 C 1.46497 * 126.03563 * 359.94744 * 28 24 2 30 30 H 1.09006 * 109.46954 * 59.99715 * 1 2 3 31 31 H 1.08995 * 109.47344 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.46840 * 300.00051 * 1 2 3 33 33 H 1.09004 * 110.39361 * 338.59028 * 7 6 4 34 34 H 1.08997 * 110.39252 * 100.86228 * 7 6 4 35 35 H 1.09002 * 109.47072 * 303.34573 * 9 8 7 36 36 H 1.08996 * 109.47601 * 63.34429 * 9 8 7 37 37 H 1.09005 * 109.47086 * 183.35058 * 9 8 7 38 38 H 1.09001 * 110.20919 * 10.51950 * 10 8 7 39 39 H 1.09004 * 110.07662 * 248.89809 * 10 8 7 40 40 H 0.97001 * 120.00021 * 180.02562 * 15 14 12 41 41 H 1.08999 * 110.06677 * 150.80478 * 20 11 10 42 42 H 1.08995 * 110.06672 * 272.32845 * 20 11 10 43 43 H 1.09002 * 109.46946 * 61.01891 * 22 21 20 44 44 H 1.09000 * 109.47073 * 181.00985 * 22 21 20 45 45 H 1.08991 * 109.47586 * 301.01443 * 22 21 20 46 46 H 1.08996 * 110.38730 * 21.40807 * 23 6 4 47 47 H 1.09003 * 110.38508 * 259.02516 * 23 6 4 48 48 H 1.07998 * 126.04334 * 0.03651 * 25 24 2 49 49 H 1.07996 * 125.90059 * 180.14003 * 26 25 24 50 50 H 1.09003 * 109.47411 * 89.99859 * 29 28 24 51 51 H 1.09003 * 109.46987 * 209.99841 * 29 28 24 52 52 H 1.08995 * 109.47348 * 329.99685 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7296 -1.6965 1.1191 6 7 1.7068 -0.2500 2.4546 7 6 0.8735 0.9275 2.7905 8 6 1.6013 1.5973 4.0074 9 6 2.5098 2.7569 3.5940 10 6 0.5536 1.9978 5.0634 11 7 1.0347 1.4592 6.3461 12 6 0.8333 1.9999 7.5880 13 1 0.4849 3.0176 7.6837 14 6 1.0770 1.2400 8.7237 15 7 1.3234 -0.0482 8.6132 16 14 1.0552 2.0456 10.4090 17 1 -0.2827 2.6409 10.6558 18 1 1.3433 1.0255 11.4490 19 1 2.0884 3.1109 10.4616 20 6 1.7693 0.2224 6.0336 21 6 2.3968 0.4289 4.6452 22 6 3.8948 0.7282 4.7301 23 6 2.1009 -0.8067 3.7693 24 6 2.0323 -0.7104 -1.2305 25 6 2.2140 -2.0448 -1.3630 26 6 2.6884 -2.2882 -2.6561 27 7 2.7955 -1.1404 -3.2749 28 7 2.3871 -0.1293 -2.3956 29 6 2.3511 1.3056 -2.6891 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 0.8396 1.6209 1.9501 34 1 -0.1339 0.6142 3.0643 35 1 3.2386 2.4051 2.8638 36 1 1.9074 3.5509 3.1525 37 1 3.0307 3.1409 4.4711 38 1 -0.4154 1.5645 4.8157 39 1 0.4750 3.0835 5.1195 40 1 1.4933 -0.5794 9.4069 41 1 2.5498 0.0534 6.7755 42 1 1.0835 -0.6246 6.0121 43 1 4.4075 -0.1130 5.1966 44 1 4.2915 0.8845 3.7270 45 1 4.0526 1.6263 5.3272 46 1 2.9941 -1.4232 3.6682 47 1 1.2835 -1.3878 4.1961 48 1 2.0239 -2.7903 -0.6051 49 1 2.9287 -3.2560 -3.0708 50 1 3.3071 1.7554 -2.4212 51 1 2.1649 1.4543 -3.7528 52 1 1.5544 1.7746 -2.1118 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982282091.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:56 Heat of formation + Delta-G solvation = 82.553468 kcal Electronic energy + Delta-G solvation = -32255.197981 eV Core-core repulsion = 28257.649650 eV Total energy + Delta-G solvation = -3997.548331 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.51061 -40.40299 -38.61662 -35.13678 -34.43761 -33.15007 -32.76240 -31.63674 -30.62842 -29.19840 -27.43996 -26.86009 -25.94784 -25.73080 -25.04363 -24.39445 -22.21645 -21.30494 -20.38758 -20.19255 -18.84260 -17.92200 -17.21462 -16.85208 -16.23508 -15.73293 -15.60310 -15.26275 -14.72257 -14.61135 -14.49227 -14.10931 -13.84133 -13.64506 -13.48040 -13.37036 -13.22732 -12.94794 -12.68779 -12.56777 -12.50324 -12.38597 -12.07668 -12.03315 -11.85763 -11.76090 -11.58378 -11.31690 -11.25233 -10.86019 -10.82464 -10.69954 -10.58511 -10.17990 -10.00439 -9.99406 -9.82480 -9.63309 -9.57851 -9.33983 -8.66603 -8.54292 -8.47962 -6.87672 -5.82738 -3.16695 1.74112 2.32490 2.64652 2.82980 3.10014 3.35617 3.40937 3.41799 4.15358 4.32371 4.42266 4.44778 4.66202 4.73589 4.79419 4.90267 4.93430 5.04734 5.11017 5.14772 5.32900 5.35134 5.39465 5.47842 5.49151 5.55069 5.58836 5.64672 5.70020 5.76787 5.81015 5.84010 5.95283 6.06032 6.12901 6.15803 6.20209 6.22967 6.26833 6.38535 6.44845 6.59966 6.65946 6.68813 6.75499 6.88297 6.89956 7.34453 7.51100 7.63269 7.67531 7.70330 8.19399 8.20744 9.10600 9.72825 10.44550 11.30860 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.026197 B = 0.002577 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.572374 B =10862.945878 C =11197.304372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.041 4.041 3 H 0.102 0.898 4 C 0.541 3.459 5 O -0.530 6.530 6 N -0.614 5.614 7 C 0.107 3.893 8 C -0.080 4.080 9 C -0.121 4.121 10 C 0.144 3.856 11 N -0.592 5.592 12 C -0.231 4.231 13 H 0.075 0.925 14 C -0.003 4.003 15 N -0.914 5.914 16 Si 0.910 3.090 17 H -0.284 1.284 18 H -0.290 1.290 19 H -0.285 1.285 20 C 0.178 3.822 21 C -0.093 4.093 22 C -0.119 4.119 23 C 0.120 3.880 24 C 0.089 3.911 25 C -0.227 4.227 26 C 0.039 3.961 27 N -0.300 5.300 28 N -0.375 5.375 29 C 0.099 3.901 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.049 0.951 36 H 0.049 0.951 37 H 0.066 0.934 38 H 0.020 0.980 39 H 0.044 0.956 40 H 0.255 0.745 41 H 0.077 0.923 42 H 0.026 0.974 43 H 0.051 0.949 44 H 0.043 0.957 45 H 0.061 0.939 46 H 0.078 0.922 47 H 0.077 0.923 48 H 0.154 0.846 49 H 0.182 0.818 50 H 0.073 0.927 51 H 0.089 0.911 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.322 2.752 -19.296 19.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.065 4.065 3 H 0.120 0.880 4 C 0.328 3.672 5 O -0.406 6.406 6 N -0.347 5.347 7 C -0.016 4.016 8 C -0.082 4.082 9 C -0.178 4.178 10 C 0.017 3.983 11 N -0.315 5.315 12 C -0.360 4.360 13 H 0.093 0.907 14 C -0.200 4.200 15 N -0.560 5.560 16 Si 0.740 3.260 17 H -0.210 1.210 18 H -0.216 1.216 19 H -0.211 1.211 20 C 0.052 3.948 21 C -0.096 4.096 22 C -0.176 4.176 23 C -0.002 4.002 24 C -0.038 4.038 25 C -0.256 4.256 26 C -0.146 4.146 27 N -0.121 5.121 28 N -0.159 5.159 29 C -0.043 4.043 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.085 0.915 38 H 0.038 0.962 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.096 0.904 42 H 0.043 0.957 43 H 0.070 0.930 44 H 0.062 0.938 45 H 0.080 0.920 46 H 0.097 0.903 47 H 0.095 0.905 48 H 0.172 0.828 49 H 0.199 0.801 50 H 0.091 0.909 51 H 0.107 0.893 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.416 2.840 -20.333 20.534 hybrid contribution -0.249 0.022 1.678 1.697 sum 0.167 2.862 -18.655 18.874 Atomic orbital electron populations 1.21908 0.91146 1.03914 1.03312 1.19686 0.97983 0.99611 0.89175 0.87966 1.19548 0.80406 0.84520 0.82763 1.90723 1.38119 1.26270 1.85527 1.48940 1.50865 1.29775 1.05116 1.23189 0.94316 0.86626 0.97502 1.22773 0.96244 0.95003 0.94187 1.21611 0.98578 0.96381 1.01218 1.21422 0.93188 0.97272 0.86436 1.44429 1.60362 1.25973 1.00770 1.18920 1.40405 0.95490 0.81149 0.90728 1.24858 1.01978 0.95318 0.97850 1.69912 1.53394 1.04477 1.28229 0.86245 0.77920 0.78140 0.83703 1.21043 1.21588 1.21136 1.21270 0.95108 0.88703 0.89679 1.22514 0.95867 0.92824 0.98347 1.21633 0.93931 1.01802 1.00263 1.22615 1.00866 0.96111 0.80644 1.20277 1.01857 0.93619 0.88072 1.21433 1.11151 0.95053 0.97959 1.23866 0.99875 0.96965 0.93911 1.77312 1.22628 0.95802 1.16400 1.48379 1.51487 1.06708 1.09340 1.21824 1.03079 0.75670 1.03705 0.91554 0.91225 0.90384 0.90927 0.90240 0.93237 0.93170 0.91531 0.96195 0.93796 0.93518 0.90439 0.95657 0.92953 0.93805 0.91957 0.90349 0.90526 0.82799 0.80128 0.90876 0.89267 0.89682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 8.93 37.16 0.33 -0.90 16 2 C -0.04 -0.44 2.07 -92.92 -0.19 -0.63 16 3 H 0.10 0.89 7.31 -51.93 -0.38 0.52 16 4 C 0.54 7.56 7.19 -10.98 -0.08 7.48 16 5 O -0.53 -9.17 13.98 5.56 0.08 -9.10 16 6 N -0.61 -8.41 3.30 -167.86 -0.55 -8.97 16 7 C 0.11 1.29 4.51 -1.09 0.00 1.29 16 8 C -0.08 -1.19 1.14 -150.80 -0.17 -1.36 16 9 C -0.12 -1.57 7.61 37.16 0.28 -1.29 16 10 C 0.14 2.63 6.50 -3.11 -0.02 2.61 16 11 N -0.59 -13.84 3.38 -171.00 -0.58 -14.42 16 12 C -0.23 -6.06 10.28 -15.06 -0.15 -6.21 16 13 H 0.07 1.89 7.85 -52.49 -0.41 1.48 16 14 C 0.00 -0.07 5.38 -17.43 -0.09 -0.16 16 15 N -0.91 -25.68 10.87 55.49 0.60 -25.07 16 16 Si 0.91 21.21 29.56 -169.99 -5.03 16.18 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 C 0.18 3.93 4.82 -3.26 -0.02 3.91 16 21 C -0.09 -1.57 1.07 -152.33 -0.16 -1.74 16 22 C -0.12 -1.92 7.42 37.16 0.28 -1.64 16 23 C 0.12 1.90 6.22 -2.47 -0.02 1.88 16 24 C 0.09 1.09 5.74 -82.26 -0.47 0.62 16 25 C -0.23 -3.05 9.14 -40.01 -0.37 -3.42 16 26 C 0.04 0.48 12.03 -17.36 -0.21 0.27 16 27 N -0.30 -4.00 12.58 30.62 0.39 -3.62 16 28 N -0.38 -4.39 4.01 -63.88 -0.26 -4.65 16 29 C 0.10 0.71 11.06 59.85 0.66 1.37 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.61 5.34 -51.93 -0.28 0.33 16 33 H 0.07 0.68 6.36 -51.93 -0.33 0.35 16 34 H 0.08 0.96 7.12 -51.93 -0.37 0.59 16 35 H 0.05 0.61 7.17 -51.93 -0.37 0.24 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.98 7.09 -51.93 -0.37 0.61 16 38 H 0.02 0.37 7.16 -51.93 -0.37 0.00 16 39 H 0.04 0.78 7.88 -51.93 -0.41 0.37 16 40 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 41 H 0.08 1.95 6.49 -51.93 -0.34 1.61 16 42 H 0.03 0.61 7.10 -51.93 -0.37 0.24 16 43 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.04 0.65 7.16 -51.93 -0.37 0.28 16 45 H 0.06 1.06 7.10 -51.93 -0.37 0.69 16 46 H 0.08 1.29 7.62 -51.93 -0.40 0.90 16 47 H 0.08 1.27 7.15 -51.93 -0.37 0.90 16 48 H 0.15 2.18 6.78 -52.49 -0.36 1.82 16 49 H 0.18 1.64 8.06 -52.49 -0.42 1.22 16 50 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 51 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 52 H 0.08 0.42 7.55 -51.93 -0.39 0.03 16 LS Contribution 395.53 15.07 5.96 5.96 Total: -1.00 -32.38 395.53 -8.14 -40.52 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -8.34 Total: 1.07 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: -0.40 Total: 2.09 kcal Atomic # 7 Polarization: -56.33 SS G_CDS: -0.40 Total: -56.73 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.08 Total: -9.10 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.38 -8.14 -40.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982282091.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.073 kcal (2) G-P(sol) polarization free energy of solvation -32.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds