Wall clock time and date at job start Wed Apr 1 2020 04:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47279 * 2 1 4 4 C 1.53000 * 109.46772 * 119.99887 * 2 1 3 5 5 C 1.50699 * 109.47667 * 294.99538 * 4 2 1 6 6 C 1.34673 * 126.58741 * 85.02422 * 5 4 2 7 7 N 1.34132 * 108.01682 * 179.97438 * 6 5 4 8 8 C 1.30492 * 109.25731 * 359.97438 * 7 6 5 9 9 N 1.35040 * 108.70159 * 359.77441 * 8 7 6 10 10 H 0.97005 * 126.40038 * 180.27081 * 9 8 7 11 11 C 1.50699 * 109.47043 * 239.99757 * 2 1 3 12 12 O 1.21276 * 120.00286 * 240.00572 * 11 2 1 13 13 N 1.34774 * 119.99762 * 59.99989 * 11 2 1 14 14 C 1.47201 * 126.70678 * 359.68650 * 13 11 2 15 15 C 1.54038 * 106.26377 * 148.62582 * 14 13 11 16 16 C 1.53004 * 112.76840 * 141.69037 * 15 14 13 17 17 C 1.54316 * 109.25644 * 267.02169 * 15 14 13 18 18 N 1.48110 * 104.71354 * 136.29653 * 17 15 14 19 19 C 1.36938 * 127.84404 * 140.24195 * 18 17 15 20 20 H 1.08001 * 119.99507 * 344.55649 * 19 18 17 21 21 C 1.38809 * 120.00039 * 164.56462 * 19 18 17 22 22 N 1.31612 * 119.99895 * 350.86610 * 21 19 18 23 23 Si 1.86801 * 119.99909 * 170.87378 * 21 19 18 24 24 H 1.48508 * 109.47099 * 94.81017 * 23 21 19 25 25 H 1.48498 * 109.47141 * 214.81000 * 23 21 19 26 26 H 1.48495 * 109.47115 * 334.81268 * 23 21 19 27 27 C 1.49984 * 104.93933 * 320.72136 * 18 17 15 28 28 C 1.54318 * 103.81476 * 38.69345 * 27 18 17 29 29 C 1.53003 * 112.07389 * 99.66265 * 28 27 18 30 30 C 1.47209 * 126.70045 * 179.97438 * 13 11 2 31 31 H 1.09001 * 109.47338 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47086 * 300.00424 * 1 2 3 33 33 H 1.09001 * 109.47128 * 59.99578 * 1 2 3 34 34 H 1.09008 * 109.47091 * 174.99920 * 4 2 1 35 35 H 1.09005 * 109.47336 * 54.99901 * 4 2 1 36 36 H 1.08000 * 125.99267 * 359.96575 * 6 5 4 37 37 H 1.08003 * 125.65012 * 180.02562 * 8 7 6 38 38 H 1.08989 * 110.07411 * 267.94394 * 14 13 11 39 39 H 1.09002 * 110.06720 * 29.47276 * 14 13 11 40 40 H 1.09002 * 109.46681 * 301.37635 * 16 15 14 41 41 H 1.08998 * 109.47566 * 61.38223 * 16 15 14 42 42 H 1.09005 * 109.46644 * 181.38501 * 16 15 14 43 43 H 1.08989 * 110.39282 * 255.11031 * 17 15 14 44 44 H 1.09010 * 110.38675 * 17.49596 * 17 15 14 45 45 H 0.97007 * 120.00140 * 180.02562 * 22 21 19 46 46 H 1.09002 * 110.28321 * 280.43997 * 27 18 17 47 47 H 1.08998 * 111.35051 * 157.46795 * 27 18 17 48 48 H 1.08997 * 109.47000 * 182.01290 * 29 28 27 49 49 H 1.08995 * 109.47307 * 302.00890 * 29 28 27 50 50 H 1.09004 * 109.46919 * 62.00978 * 29 28 27 51 51 H 1.08995 * 110.07168 * 330.53706 * 30 13 11 52 52 H 1.09001 * 110.06468 * 92.00933 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6413 0.0570 2.4766 6 6 0.4666 -0.0213 3.1304 7 7 0.5107 0.8297 4.1663 8 6 1.6683 1.4318 4.1796 9 7 2.4061 0.9746 3.1451 10 1 3.3088 1.2469 2.9171 11 6 2.0323 -0.7105 -1.2304 12 8 2.7294 -1.6966 -1.1192 13 7 1.7067 -0.2500 -2.4545 14 6 0.8700 0.9220 -2.7598 15 6 1.4057 1.5016 -4.0826 16 6 0.2921 2.0107 -5.0001 17 6 2.4481 2.5966 -3.7733 18 7 3.5573 2.3384 -4.7202 19 6 4.3042 3.2560 -5.4097 20 1 3.9629 4.2773 -5.4926 21 6 5.4998 2.8734 -6.0022 22 7 6.0062 1.6842 -5.7542 23 14 6.3900 4.0465 -7.1514 24 1 7.4154 4.8034 -6.3891 25 1 7.0490 3.2735 -8.2346 26 1 5.4134 4.9953 -7.7440 27 6 3.6812 0.8446 -4.7725 28 6 2.2193 0.3519 -4.7314 29 6 1.6962 -0.0127 -6.1222 30 6 2.1134 -0.8244 -3.7474 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 3.1263 -0.7995 1.2057 35 1 1.6052 -1.7198 1.2952 36 1 -0.3653 -0.6576 2.8668 37 1 1.9855 2.1703 4.9010 38 1 -0.1705 0.6189 -2.8756 39 1 0.9582 1.6619 -1.9643 40 1 -0.3948 1.1947 -5.2249 41 1 -0.2496 2.8150 -4.5023 42 1 0.7274 2.3849 -5.9267 43 1 2.0233 3.5852 -3.9466 44 1 2.7985 2.5078 -2.7449 45 1 6.8419 1.4170 -6.1679 46 1 4.2292 0.4802 -3.9035 47 1 4.1661 0.5185 -5.6926 48 1 0.6530 -0.3200 -6.0490 49 1 1.7744 0.8539 -6.7786 50 1 2.2886 -0.8319 -6.5299 51 1 3.0800 -1.3186 -3.6497 52 1 1.3633 -1.5357 -4.0932 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982634192.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:59 Heat of formation + Delta-G solvation = 48.088447 kcal Electronic energy + Delta-G solvation = -32120.564322 eV Core-core repulsion = 28121.521475 eV Total energy + Delta-G solvation = -3999.042846 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.25125 -40.61045 -38.74208 -35.12651 -34.89772 -32.92386 -32.61876 -31.80039 -30.63242 -29.95850 -27.09568 -26.82916 -25.96009 -25.80045 -24.84727 -23.29774 -21.99071 -21.47238 -20.92635 -20.16930 -19.04777 -18.04994 -17.87615 -16.98442 -16.49115 -15.75477 -15.55080 -14.96363 -14.88708 -14.67239 -14.37519 -14.13529 -13.95056 -13.76511 -13.61277 -13.28211 -13.23430 -13.08336 -12.74013 -12.66249 -12.31974 -12.00093 -11.91300 -11.74176 -11.65294 -11.51680 -11.37486 -11.27224 -11.21515 -10.87035 -10.81878 -10.71075 -10.19802 -10.15926 -10.11165 -9.98478 -9.92456 -9.78733 -9.56127 -9.52330 -8.68914 -8.52991 -8.42807 -6.87375 -5.81231 -3.15441 1.83606 2.76885 2.90624 2.97436 3.20787 3.34582 3.40770 3.42509 4.35090 4.42450 4.54611 4.67597 4.74010 4.77788 4.83959 5.01002 5.10898 5.14276 5.24823 5.35483 5.39456 5.48176 5.51159 5.52668 5.55606 5.61420 5.63116 5.68014 5.74307 5.83375 5.90751 5.92644 5.99804 6.08562 6.09396 6.14119 6.15927 6.27471 6.41163 6.43421 6.47624 6.55031 6.60817 6.68925 6.79343 6.90768 7.16873 7.30962 7.51747 7.69081 7.75328 7.86914 8.15117 8.30718 9.06122 9.71396 10.48165 11.32644 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013433 B = 0.002935 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.946792 B = 9537.488314 C =10343.677387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.100 4.100 3 H 0.094 0.906 4 C -0.026 4.026 5 C -0.014 4.014 6 C -0.024 4.024 7 N -0.496 5.496 8 C 0.179 3.821 9 N -0.566 5.566 10 H 0.420 0.580 11 C 0.536 3.464 12 O -0.546 6.546 13 N -0.606 5.606 14 C 0.114 3.886 15 C -0.085 4.085 16 C -0.121 4.121 17 C 0.143 3.857 18 N -0.595 5.595 19 C -0.226 4.226 20 H 0.074 0.926 21 C -0.005 4.005 22 N -0.914 5.914 23 Si 0.909 3.091 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.175 3.825 28 C -0.092 4.092 29 C -0.119 4.119 30 C 0.118 3.882 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.168 0.832 37 H 0.206 0.794 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.051 0.949 41 H 0.049 0.951 42 H 0.068 0.932 43 H 0.047 0.953 44 H 0.017 0.983 45 H 0.253 0.747 46 H 0.022 0.978 47 H 0.087 0.913 48 H 0.046 0.954 49 H 0.066 0.934 50 H 0.051 0.949 51 H 0.080 0.920 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.444 -2.670 11.454 17.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.122 4.122 3 H 0.112 0.888 4 C -0.065 4.065 5 C -0.130 4.130 6 C -0.172 4.172 7 N -0.215 5.215 8 C -0.104 4.104 9 N -0.169 5.169 10 H 0.258 0.742 11 C 0.325 3.675 12 O -0.424 6.424 13 N -0.338 5.338 14 C -0.010 4.010 15 C -0.087 4.087 16 C -0.178 4.178 17 C 0.016 3.984 18 N -0.319 5.319 19 C -0.355 4.355 20 H 0.092 0.908 21 C -0.202 4.202 22 N -0.560 5.560 23 Si 0.739 3.261 24 H -0.216 1.216 25 H -0.216 1.216 26 H -0.206 1.206 27 C 0.050 3.950 28 C -0.094 4.094 29 C -0.177 4.177 30 C -0.005 4.005 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.113 0.887 36 H 0.185 0.815 37 H 0.223 0.777 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.087 0.913 43 H 0.065 0.935 44 H 0.035 0.965 45 H 0.064 0.936 46 H 0.040 0.960 47 H 0.105 0.895 48 H 0.065 0.935 49 H 0.085 0.915 50 H 0.070 0.930 51 H 0.098 0.902 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.488 -3.075 12.059 17.630 hybrid contribution 1.745 0.745 -1.174 2.231 sum -10.743 -2.330 10.886 15.470 Atomic orbital electron populations 1.21994 0.92568 1.02967 1.03440 1.21183 0.98166 1.00654 0.92152 0.88777 1.19850 1.02218 0.97539 0.86913 1.21291 0.93997 0.98362 0.99320 1.22094 0.97573 1.02668 0.94879 1.70279 1.19484 1.10208 1.21510 1.24945 0.88832 1.02874 0.93786 1.43357 1.16561 1.32969 1.24050 0.74168 1.20101 0.79851 0.84369 0.83210 1.90694 1.38577 1.26933 1.86159 1.48368 1.50567 1.29526 1.05369 1.22269 0.93736 0.87377 0.97614 1.22395 0.96136 0.96894 0.93274 1.21619 0.96579 0.99911 0.99720 1.21664 0.88761 0.95051 0.92884 1.45316 1.37240 1.01703 1.47613 1.18969 0.99540 0.91325 1.25616 0.90829 1.24862 0.96510 0.97350 1.01454 1.69903 1.20431 1.19600 1.46055 0.86165 0.79622 0.79882 0.80445 1.21638 1.21607 1.20563 1.21937 0.88322 0.83501 1.01230 1.22512 1.00246 0.92736 0.93940 1.21614 0.99038 1.01563 0.95462 1.22105 1.00639 0.95831 0.81913 0.91978 0.90905 0.91454 0.90139 0.88698 0.81463 0.77727 0.91663 0.90752 0.92989 0.93206 0.91326 0.93474 0.96519 0.93636 0.95962 0.89512 0.93528 0.91538 0.92969 0.90176 0.92324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 8.64 37.16 0.32 -1.09 16 2 C -0.10 -1.12 2.04 -91.77 -0.19 -1.31 16 3 H 0.09 1.06 7.87 -51.93 -0.41 0.65 16 4 C -0.03 -0.28 4.59 -27.88 -0.13 -0.40 16 5 C -0.01 -0.14 6.09 -81.60 -0.50 -0.63 16 6 C -0.02 -0.26 10.10 -17.81 -0.18 -0.44 16 7 N -0.50 -5.84 11.25 -14.66 -0.16 -6.01 16 8 C 0.18 1.59 13.04 -90.38 -1.18 0.41 16 9 N -0.57 -4.75 6.15 -10.30 -0.06 -4.82 16 10 H 0.42 2.53 8.96 -40.82 -0.37 2.16 16 11 C 0.54 8.14 7.24 -10.99 -0.08 8.06 16 12 O -0.55 -10.13 16.15 5.56 0.09 -10.04 16 13 N -0.61 -9.11 3.31 -171.47 -0.57 -9.68 16 14 C 0.11 1.47 4.16 -3.12 -0.01 1.46 16 15 C -0.08 -1.31 1.08 -152.18 -0.16 -1.47 16 16 C -0.12 -1.60 7.53 37.16 0.28 -1.32 16 17 C 0.14 2.77 6.32 -2.47 -0.02 2.75 16 18 N -0.60 -14.38 3.41 -167.44 -0.57 -14.95 16 19 C -0.23 -6.05 10.35 -15.06 -0.16 -6.21 16 20 H 0.07 1.91 7.85 -52.49 -0.41 1.50 16 21 C 0.00 -0.12 5.40 -17.43 -0.09 -0.22 16 22 N -0.91 -26.27 10.85 55.49 0.60 -25.67 16 23 Si 0.91 21.51 29.56 -169.99 -5.03 16.48 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 27 C 0.18 4.02 5.02 -1.41 -0.01 4.01 16 28 C -0.09 -1.58 1.06 -152.34 -0.16 -1.75 16 29 C -0.12 -1.84 7.45 37.16 0.28 -1.57 16 30 C 0.12 1.92 5.94 -3.28 -0.02 1.90 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.64 6.18 -51.93 -0.32 0.32 16 33 H 0.07 0.60 5.15 -51.93 -0.27 0.34 16 34 H 0.08 0.92 7.96 -51.92 -0.41 0.51 16 35 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.17 1.54 8.02 -52.49 -0.42 1.12 16 37 H 0.21 1.03 8.06 -52.48 -0.42 0.60 16 38 H 0.07 0.71 7.33 -51.94 -0.38 0.33 16 39 H 0.07 0.89 6.37 -51.93 -0.33 0.56 16 40 H 0.05 0.60 7.09 -51.93 -0.37 0.23 16 41 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.07 1.04 7.17 -51.93 -0.37 0.67 16 43 H 0.05 0.88 7.90 -51.94 -0.41 0.47 16 44 H 0.02 0.34 7.55 -51.92 -0.39 -0.05 16 45 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 46 H 0.02 0.57 7.51 -51.93 -0.39 0.18 16 47 H 0.09 2.24 6.36 -51.93 -0.33 1.91 16 48 H 0.05 0.60 7.10 -51.93 -0.37 0.23 16 49 H 0.07 1.12 7.16 -51.93 -0.37 0.75 16 50 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 51 H 0.08 1.48 7.34 -51.93 -0.38 1.10 16 52 H 0.06 0.85 7.88 -51.93 -0.41 0.44 16 LS Contribution 395.75 15.07 5.96 5.96 Total: -1.00 -33.46 395.75 -10.10 -43.56 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -8.36 Total: 2.98 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: -2.00 Total: 2.18 kcal Atomic # 7 Polarization: -60.36 SS G_CDS: -0.77 Total: -61.13 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.09 Total: -10.04 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.46 -10.10 -43.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982634192.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.652 kcal (2) G-P(sol) polarization free energy of solvation -33.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds