Wall clock time and date at job start Wed Apr 1 2020 04:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47279 * 2 1 4 4 C 1.53000 * 109.46772 * 119.99887 * 2 1 3 5 5 C 1.50699 * 109.47667 * 294.99538 * 4 2 1 6 6 C 1.34673 * 126.58741 * 85.02422 * 5 4 2 7 7 N 1.34132 * 108.01682 * 179.97438 * 6 5 4 8 8 C 1.30492 * 109.25731 * 359.97438 * 7 6 5 9 9 N 1.35040 * 108.70159 * 359.77441 * 8 7 6 10 10 H 0.97005 * 126.40038 * 180.27081 * 9 8 7 11 11 C 1.50699 * 109.47043 * 239.99757 * 2 1 3 12 12 O 1.21276 * 120.00286 * 240.00572 * 11 2 1 13 13 N 1.34774 * 119.99762 * 59.99989 * 11 2 1 14 14 C 1.47201 * 126.70678 * 359.68650 * 13 11 2 15 15 C 1.54038 * 106.26377 * 148.62582 * 14 13 11 16 16 C 1.53004 * 112.76840 * 141.69037 * 15 14 13 17 17 C 1.54316 * 109.25644 * 267.02169 * 15 14 13 18 18 N 1.48110 * 104.71354 * 136.29653 * 17 15 14 19 19 C 1.36938 * 127.84404 * 140.24195 * 18 17 15 20 20 H 1.08001 * 119.99507 * 344.55649 * 19 18 17 21 21 C 1.38809 * 120.00039 * 164.56462 * 19 18 17 22 22 N 1.31612 * 119.99895 * 350.86610 * 21 19 18 23 23 Si 1.86801 * 119.99909 * 170.87378 * 21 19 18 24 24 H 1.48508 * 109.47099 * 94.81017 * 23 21 19 25 25 H 1.48498 * 109.47141 * 214.81000 * 23 21 19 26 26 H 1.48495 * 109.47115 * 334.81268 * 23 21 19 27 27 C 1.49984 * 104.93933 * 320.72136 * 18 17 15 28 28 C 1.54318 * 103.81476 * 38.69345 * 27 18 17 29 29 C 1.53003 * 112.07389 * 99.66265 * 28 27 18 30 30 C 1.47209 * 126.70045 * 179.97438 * 13 11 2 31 31 H 1.09001 * 109.47338 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47086 * 300.00424 * 1 2 3 33 33 H 1.09001 * 109.47128 * 59.99578 * 1 2 3 34 34 H 1.09008 * 109.47091 * 174.99920 * 4 2 1 35 35 H 1.09005 * 109.47336 * 54.99901 * 4 2 1 36 36 H 1.08000 * 125.99267 * 359.96575 * 6 5 4 37 37 H 1.08003 * 125.65012 * 180.02562 * 8 7 6 38 38 H 1.08989 * 110.07411 * 267.94394 * 14 13 11 39 39 H 1.09002 * 110.06720 * 29.47276 * 14 13 11 40 40 H 1.09002 * 109.46681 * 301.37635 * 16 15 14 41 41 H 1.08998 * 109.47566 * 61.38223 * 16 15 14 42 42 H 1.09005 * 109.46644 * 181.38501 * 16 15 14 43 43 H 1.08989 * 110.39282 * 255.11031 * 17 15 14 44 44 H 1.09010 * 110.38675 * 17.49596 * 17 15 14 45 45 H 0.97007 * 120.00140 * 180.02562 * 22 21 19 46 46 H 1.09002 * 110.28321 * 280.43997 * 27 18 17 47 47 H 1.08998 * 111.35051 * 157.46795 * 27 18 17 48 48 H 1.08997 * 109.47000 * 182.01290 * 29 28 27 49 49 H 1.08995 * 109.47307 * 302.00890 * 29 28 27 50 50 H 1.09004 * 109.46919 * 62.00978 * 29 28 27 51 51 H 1.08995 * 110.07168 * 330.53706 * 30 13 11 52 52 H 1.09001 * 110.06468 * 92.00933 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6413 0.0570 2.4766 6 6 0.4666 -0.0213 3.1304 7 7 0.5107 0.8297 4.1663 8 6 1.6683 1.4318 4.1796 9 7 2.4061 0.9746 3.1451 10 1 3.3088 1.2469 2.9171 11 6 2.0323 -0.7105 -1.2304 12 8 2.7294 -1.6966 -1.1192 13 7 1.7067 -0.2500 -2.4545 14 6 0.8700 0.9220 -2.7598 15 6 1.4057 1.5016 -4.0826 16 6 0.2921 2.0107 -5.0001 17 6 2.4481 2.5966 -3.7733 18 7 3.5573 2.3384 -4.7202 19 6 4.3042 3.2560 -5.4097 20 1 3.9629 4.2773 -5.4926 21 6 5.4998 2.8734 -6.0022 22 7 6.0062 1.6842 -5.7542 23 14 6.3900 4.0465 -7.1514 24 1 7.4154 4.8034 -6.3891 25 1 7.0490 3.2735 -8.2346 26 1 5.4134 4.9953 -7.7440 27 6 3.6812 0.8446 -4.7725 28 6 2.2193 0.3519 -4.7314 29 6 1.6962 -0.0127 -6.1222 30 6 2.1134 -0.8244 -3.7474 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 3.1263 -0.7995 1.2057 35 1 1.6052 -1.7198 1.2952 36 1 -0.3653 -0.6576 2.8668 37 1 1.9855 2.1703 4.9010 38 1 -0.1705 0.6189 -2.8756 39 1 0.9582 1.6619 -1.9643 40 1 -0.3948 1.1947 -5.2249 41 1 -0.2496 2.8150 -4.5023 42 1 0.7274 2.3849 -5.9267 43 1 2.0233 3.5852 -3.9466 44 1 2.7985 2.5078 -2.7449 45 1 6.8419 1.4170 -6.1679 46 1 4.2292 0.4802 -3.9035 47 1 4.1661 0.5185 -5.6926 48 1 0.6530 -0.3200 -6.0490 49 1 1.7744 0.8539 -6.7786 50 1 2.2886 -0.8319 -6.5299 51 1 3.0800 -1.3186 -3.6497 52 1 1.3633 -1.5357 -4.0932 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982634192.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:58 Heat of formation + Delta-G solvation = 27.431974 kcal Electronic energy + Delta-G solvation = -32121.460054 eV Core-core repulsion = 28121.521475 eV Total energy + Delta-G solvation = -3999.938578 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.98434 -41.89486 -40.03647 -36.50086 -36.08225 -34.52378 -33.40999 -33.13232 -32.38164 -30.79012 -28.52938 -27.65296 -27.51898 -26.95283 -26.41993 -24.52891 -23.34343 -22.29525 -21.69620 -21.67010 -20.20637 -19.27315 -18.87418 -18.66951 -17.72271 -16.94928 -16.78767 -16.49602 -15.98097 -15.76434 -15.63272 -15.60025 -15.06070 -14.95502 -14.62263 -14.57347 -14.36725 -14.25669 -13.77843 -13.63399 -13.42638 -13.37379 -13.24111 -13.14083 -13.02686 -12.88816 -12.73159 -12.56279 -12.52295 -12.20204 -12.13145 -12.09677 -11.93594 -11.75020 -11.43022 -11.19886 -11.09749 -10.97997 -10.92584 -10.74541 -10.70164 -9.66501 -9.28274 -8.86857 -7.89869 -5.25451 1.10533 1.44228 1.44964 1.54791 1.58797 1.97623 2.24582 2.33326 2.47489 3.27972 3.32866 3.47228 3.57411 3.81966 3.85796 3.87090 3.91634 3.99199 4.14746 4.21582 4.30965 4.33376 4.39195 4.41207 4.46587 4.60071 4.64570 4.71947 4.76220 4.79925 4.80336 4.86211 4.92335 4.94266 4.96884 5.05026 5.09065 5.15821 5.24596 5.27117 5.28949 5.30152 5.38094 5.42982 5.45659 5.51821 5.65258 5.77271 5.81172 6.16783 6.55517 6.57881 6.99319 7.11323 7.15304 7.69463 8.48659 9.23348 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013433 B = 0.002935 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.946792 B = 9537.488314 C =10343.677387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.089 4.089 3 H 0.096 0.904 4 C -0.018 4.018 5 C -0.020 4.020 6 C -0.033 4.033 7 N -0.534 5.534 8 C 0.188 3.812 9 N -0.562 5.562 10 H 0.431 0.569 11 C 0.529 3.471 12 O -0.588 6.588 13 N -0.610 5.610 14 C 0.116 3.884 15 C -0.074 4.074 16 C -0.115 4.115 17 C 0.138 3.862 18 N -0.618 5.618 19 C -0.232 4.232 20 H 0.080 0.920 21 C -0.064 4.064 22 N -0.949 5.949 23 Si 0.974 3.026 24 H -0.290 1.290 25 H -0.296 1.296 26 H -0.265 1.265 27 C 0.185 3.815 28 C -0.084 4.084 29 C -0.113 4.113 30 C 0.121 3.879 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.093 0.907 36 H 0.177 0.823 37 H 0.241 0.759 38 H 0.106 0.894 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.045 0.955 43 H 0.057 0.943 44 H 0.007 0.993 45 H 0.246 0.754 46 H -0.022 1.022 47 H 0.048 0.952 48 H 0.086 0.914 49 H 0.049 0.951 50 H 0.045 0.955 51 H 0.043 0.957 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.726 -1.387 12.079 19.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 H 0.114 0.886 4 C -0.057 4.057 5 C -0.136 4.136 6 C -0.180 4.180 7 N -0.254 5.254 8 C -0.096 4.096 9 N -0.166 5.166 10 H 0.270 0.730 11 C 0.319 3.681 12 O -0.469 6.469 13 N -0.341 5.341 14 C -0.006 4.006 15 C -0.076 4.076 16 C -0.173 4.173 17 C 0.013 3.987 18 N -0.342 5.342 19 C -0.361 4.361 20 H 0.098 0.902 21 C -0.258 4.258 22 N -0.598 5.598 23 Si 0.802 3.198 24 H -0.217 1.217 25 H -0.223 1.223 26 H -0.189 1.189 27 C 0.060 3.940 28 C -0.086 4.086 29 C -0.170 4.170 30 C -0.002 4.002 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.112 0.888 36 H 0.194 0.806 37 H 0.257 0.743 38 H 0.124 0.876 39 H 0.107 0.893 40 H 0.099 0.901 41 H 0.092 0.908 42 H 0.064 0.936 43 H 0.075 0.925 44 H 0.025 0.975 45 H 0.055 0.945 46 H -0.004 1.004 47 H 0.067 0.933 48 H 0.105 0.895 49 H 0.068 0.932 50 H 0.064 0.936 51 H 0.062 0.938 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -15.811 -1.756 12.687 20.347 hybrid contribution 2.835 0.380 -1.294 3.139 sum -12.976 -1.376 11.393 17.322 Atomic orbital electron populations 1.21962 0.90344 1.03574 1.04273 1.21158 0.99801 0.99918 0.90178 0.88564 1.19704 1.01164 0.97662 0.87172 1.21116 0.94217 0.98996 0.99315 1.22317 0.98109 1.02779 0.94826 1.70286 1.21146 1.11517 1.22457 1.25649 0.87974 1.02285 0.93647 1.43390 1.17005 1.32460 1.23782 0.72950 1.20862 0.79048 0.84012 0.84147 1.90673 1.40423 1.29048 1.86779 1.48497 1.50669 1.30043 1.04905 1.22446 0.94988 0.86819 0.96344 1.22354 0.95659 0.94475 0.95098 1.21600 0.95872 1.01650 0.98136 1.21892 0.88316 0.97256 0.91248 1.45616 1.38099 1.01860 1.48611 1.19367 0.99640 0.92046 1.25013 0.90205 1.25670 0.97680 0.98922 1.03481 1.70124 1.20599 1.21542 1.47487 0.85137 0.78429 0.77998 0.78211 1.21736 1.22260 1.18906 1.21636 0.91709 0.83444 0.97210 1.22343 0.96442 0.93966 0.95831 1.21565 1.01207 1.00677 0.93538 1.21973 0.99856 0.95698 0.82678 0.91546 0.90099 0.90442 0.91695 0.88836 0.80565 0.74327 0.87596 0.89296 0.90112 0.90784 0.93569 0.92479 0.97504 0.94497 1.00446 0.93337 0.89490 0.93209 0.93570 0.93799 0.89431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 8.64 71.98 0.62 -1.60 16 2 C -0.09 -1.88 2.04 -11.54 -0.02 -1.90 16 3 H 0.10 2.01 7.87 -2.39 -0.02 1.99 16 4 C -0.02 -0.37 4.59 29.85 0.14 -0.23 16 5 C -0.02 -0.38 6.09 40.95 0.25 -0.13 16 6 C -0.03 -0.66 10.10 83.52 0.84 0.18 16 7 N -0.53 -11.68 11.25 -200.31 -2.25 -13.93 16 8 C 0.19 2.92 13.04 180.27 2.35 5.28 16 9 N -0.56 -8.55 6.15 -186.50 -1.15 -9.69 16 10 H 0.43 4.60 8.96 -92.70 -0.83 3.76 16 11 C 0.53 15.82 7.24 87.66 0.63 16.46 16 12 O -0.59 -22.48 16.15 -3.02 -0.05 -22.52 16 13 N -0.61 -17.49 3.31 -814.81 -2.70 -20.19 16 14 C 0.12 2.59 4.16 86.60 0.36 2.95 16 15 C -0.07 -2.10 1.08 -50.67 -0.05 -2.15 16 16 C -0.12 -2.57 7.53 71.98 0.54 -2.02 16 17 C 0.14 5.25 6.32 86.52 0.55 5.80 16 18 N -0.62 -30.67 3.41 -683.65 -2.33 -33.00 16 19 C -0.23 -12.66 10.35 84.03 0.87 -11.79 16 20 H 0.08 4.16 7.85 -2.91 -0.02 4.14 16 21 C -0.06 -3.62 5.40 84.86 0.46 -3.16 16 22 N -0.95 -57.59 10.85 21.65 0.23 -57.36 16 23 Si 0.97 45.32 29.56 68.60 2.03 47.34 16 24 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 25 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 26 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 27 C 0.19 8.98 5.02 86.15 0.43 9.42 16 28 C -0.08 -2.85 1.06 -50.78 -0.05 -2.90 16 29 C -0.11 -3.32 7.45 71.98 0.54 -2.78 16 30 C 0.12 3.90 5.94 86.49 0.51 4.41 16 31 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.08 1.17 6.18 -2.38 -0.01 1.15 16 33 H 0.08 1.04 5.15 -2.39 -0.01 1.03 16 34 H 0.06 1.52 7.96 -2.38 -0.02 1.51 16 35 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 36 H 0.18 2.98 8.02 -2.91 -0.02 2.95 16 37 H 0.24 1.67 8.06 -2.91 -0.02 1.64 16 38 H 0.11 1.64 7.33 -2.39 -0.02 1.63 16 39 H 0.09 1.78 6.37 -2.39 -0.02 1.77 16 40 H 0.08 1.38 7.09 -2.39 -0.02 1.36 16 41 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.05 1.26 7.17 -2.38 -0.02 1.25 16 43 H 0.06 2.03 7.90 -2.39 -0.02 2.01 16 44 H 0.01 0.28 7.55 -2.38 -0.02 0.27 16 45 H 0.25 14.59 8.31 -92.70 -0.77 13.82 16 46 H -0.02 -1.26 7.51 -2.39 -0.02 -1.27 16 47 H 0.05 2.69 6.36 -2.39 -0.02 2.67 16 48 H 0.09 1.88 7.10 -2.39 -0.02 1.86 16 49 H 0.05 1.64 7.16 -2.39 -0.02 1.63 16 50 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 51 H 0.04 1.72 7.34 -2.39 -0.02 1.71 16 52 H 0.09 2.33 7.88 -2.39 -0.02 2.31 16 Total: -1.00 -78.37 395.75 2.85 -75.52 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: 0.10 Total: 18.02 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: 8.97 Total: 15.81 kcal Atomic # 7 Polarization: -125.98 SS G_CDS: -8.20 Total: -134.18 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.05 Total: -22.52 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.34 kcal Total: -78.37 2.85 -75.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982634192.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.954 kcal (2) G-P(sol) polarization free energy of solvation -78.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds