Wall clock time and date at job start Wed Apr 1 2020 04:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08993 * 109.46998 * 2 1 4 4 C 1.53002 * 109.47259 * 240.00237 * 2 1 3 5 5 C 1.50701 * 109.46850 * 64.99615 * 4 2 1 6 6 C 1.34666 * 126.58676 * 85.02980 * 5 4 2 7 7 N 1.34133 * 108.02149 * 179.97438 * 6 5 4 8 8 C 1.30497 * 109.25455 * 0.02562 * 7 6 5 9 9 N 1.35055 * 108.69905 * 359.76396 * 8 7 6 10 10 H 0.96995 * 126.39623 * 180.27294 * 9 8 7 11 11 C 1.50707 * 109.47238 * 120.00516 * 2 1 3 12 12 O 1.21278 * 119.99859 * 119.99964 * 11 2 1 13 13 N 1.34772 * 119.99531 * 299.99792 * 11 2 1 14 14 C 1.48113 * 127.84033 * 180.02562 * 13 11 2 15 15 C 1.54314 * 104.71506 * 140.22421 * 14 13 11 16 16 C 1.53000 * 112.07457 * 146.93994 * 15 14 13 17 17 C 1.53761 * 109.08209 * 271.63904 * 15 14 13 18 18 N 1.47206 * 106.40542 * 93.19502 * 17 15 14 19 19 C 1.36934 * 126.70321 * 211.29686 * 18 17 15 20 20 H 1.07999 * 119.99905 * 14.16958 * 19 18 17 21 21 C 1.38808 * 119.99813 * 194.17713 * 19 18 17 22 22 N 1.31620 * 120.00236 * 8.82641 * 21 19 18 23 23 Si 1.86803 * 119.99871 * 188.82711 * 21 19 18 24 24 H 1.48504 * 109.46901 * 92.91925 * 23 21 19 25 25 H 1.48504 * 109.47303 * 212.91602 * 23 21 19 26 26 H 1.48501 * 109.46970 * 332.91846 * 23 21 19 27 27 C 1.47205 * 106.58913 * 31.56390 * 18 17 15 28 28 C 1.54032 * 106.26681 * 328.36693 * 27 18 17 29 29 C 1.53007 * 112.77159 * 141.68116 * 28 27 18 30 30 C 1.48114 * 127.84788 * 359.97438 * 13 11 2 31 31 H 1.09011 * 109.46954 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47469 * 299.99409 * 1 2 3 33 33 H 1.09001 * 109.47236 * 60.00112 * 1 2 3 34 34 H 1.08992 * 109.47215 * 184.99855 * 4 2 1 35 35 H 1.08999 * 109.47263 * 305.00284 * 4 2 1 36 36 H 1.08002 * 125.99581 * 359.95971 * 6 5 4 37 37 H 1.07996 * 125.65341 * 180.02562 * 8 7 6 38 38 H 1.09004 * 110.38908 * 21.41408 * 14 13 11 39 39 H 1.09002 * 110.38956 * 259.03056 * 14 13 11 40 40 H 1.09006 * 109.46936 * 182.00833 * 16 15 14 41 41 H 1.08998 * 109.47354 * 302.01102 * 16 15 14 42 42 H 1.08999 * 109.46877 * 62.01540 * 16 15 14 43 43 H 1.09001 * 110.06463 * 333.96381 * 17 15 14 44 44 H 1.08999 * 110.06848 * 212.43609 * 17 15 14 45 45 H 0.96998 * 120.00022 * 180.02562 * 22 21 19 46 46 H 1.08996 * 110.07012 * 87.68761 * 27 18 17 47 47 H 1.09006 * 110.06600 * 209.20984 * 27 18 17 48 48 H 1.09002 * 109.46689 * 301.38317 * 29 28 27 49 49 H 1.08993 * 109.46731 * 61.38189 * 29 28 27 50 50 H 1.09001 * 109.47000 * 181.38038 * 29 28 27 51 51 H 1.08997 * 110.39155 * 338.59635 * 30 13 11 52 52 H 1.09007 * 110.38404 * 100.86150 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6412 0.0571 -2.4766 6 6 2.3074 1.0927 -3.0219 7 7 1.6242 1.5038 -4.1005 8 6 0.5598 0.7627 -4.2440 9 7 0.5350 -0.1557 -3.2540 10 1 -0.1412 -0.8378 -3.1186 11 6 2.0323 -0.7105 1.2304 12 8 2.7296 -1.6966 1.1190 13 7 1.7067 -0.2501 2.4545 14 6 2.1010 -0.8068 3.7692 15 6 2.3967 0.4286 4.6453 16 6 2.0352 0.1925 6.1131 17 6 3.8714 0.8275 4.4705 18 7 3.9045 1.8398 3.4023 19 6 4.9200 2.0540 2.5090 20 1 5.7007 1.3170 2.3920 21 6 4.9461 3.2186 1.7541 22 7 4.0994 4.1918 2.0160 23 14 6.1827 3.4047 0.3665 24 1 5.5659 2.9601 -0.9092 25 1 6.5866 4.8290 0.2510 26 1 7.3786 2.5727 0.6544 27 6 2.6354 2.5809 3.4861 28 6 1.5832 1.5784 3.9964 29 6 0.5909 2.2085 4.9759 30 6 0.8744 0.9280 2.7905 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 3.1262 -0.7994 -1.2056 35 1 1.6054 -1.7197 -1.2953 36 1 3.2299 1.5179 -2.6550 37 1 -0.1769 0.8639 -5.0272 38 1 2.9943 -1.4233 3.6681 39 1 1.2836 -1.3881 4.1960 40 1 2.2269 1.1004 6.6851 41 1 0.9799 -0.0693 6.1898 42 1 2.6414 -0.6217 6.5101 43 1 4.4620 -0.0416 4.1807 44 1 4.2570 1.2499 5.3983 45 1 4.1174 5.0054 1.4882 46 1 2.7331 3.4122 4.1842 47 1 2.3525 2.9509 2.5005 48 1 1.1325 2.6167 5.8293 49 1 0.0449 3.0083 4.4758 50 1 -0.1113 1.4493 5.3205 51 1 0.8411 1.6216 1.9504 52 1 -0.1335 0.6153 3.0640 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982634193.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:06 Heat of formation + Delta-G solvation = 49.136968 kcal Electronic energy + Delta-G solvation = -33137.900010 eV Core-core repulsion = 29138.902631 eV Total energy + Delta-G solvation = -3998.997379 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -42.00763 -40.46889 -38.55579 -34.85384 -34.69473 -33.00493 -32.31279 -31.70910 -30.73276 -29.95351 -26.82901 -26.41370 -25.97194 -25.67044 -24.91949 -23.14602 -21.95162 -21.48799 -20.57015 -19.97704 -18.84637 -17.86112 -17.78627 -16.86944 -16.32310 -15.61007 -15.46747 -14.94106 -14.74087 -14.47825 -14.16399 -13.93677 -13.61377 -13.40200 -13.33181 -13.27256 -13.20976 -12.85361 -12.77378 -12.61022 -12.35779 -12.01400 -11.87306 -11.72546 -11.51955 -11.41492 -11.39747 -11.17077 -10.98945 -10.81232 -10.79186 -10.63891 -10.06920 -10.00783 -9.93818 -9.89580 -9.78463 -9.70916 -9.56249 -9.34932 -8.64477 -8.27791 -8.21197 -6.77424 -5.74973 -3.07082 2.06943 3.05383 3.11427 3.24192 3.42062 3.43146 3.50274 3.50556 4.51684 4.57279 4.74605 4.87009 4.88461 4.97197 4.99618 5.17477 5.19219 5.37382 5.42070 5.44204 5.51761 5.55533 5.58737 5.62163 5.71014 5.72446 5.73188 5.80821 5.87429 5.90355 5.96813 6.00314 6.08138 6.09291 6.13741 6.20030 6.30395 6.35906 6.39826 6.44024 6.48392 6.53470 6.71008 6.84559 6.84799 6.94245 7.37192 7.38748 7.56830 7.76828 8.01172 8.12630 8.26827 8.58626 9.20016 9.81248 10.53462 11.38643 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009258 B = 0.004961 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3023.762287 B = 5643.123757 C = 7414.019563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.102 4.102 3 H 0.109 0.891 4 C -0.023 4.023 5 C -0.012 4.012 6 C -0.019 4.019 7 N -0.492 5.492 8 C 0.173 3.827 9 N -0.569 5.569 10 H 0.416 0.584 11 C 0.552 3.448 12 O -0.553 6.553 13 N -0.602 5.602 14 C 0.124 3.876 15 C -0.087 4.087 16 C -0.123 4.123 17 C 0.144 3.856 18 N -0.588 5.588 19 C -0.220 4.220 20 H 0.072 0.928 21 C -0.003 4.003 22 N -0.917 5.917 23 Si 0.903 3.097 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.183 3.817 28 C -0.098 4.098 29 C -0.122 4.122 30 C 0.118 3.882 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.098 0.902 35 H 0.073 0.927 36 H 0.170 0.830 37 H 0.204 0.796 38 H 0.077 0.923 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.053 0.947 42 H 0.052 0.948 43 H 0.040 0.960 44 H 0.017 0.983 45 H 0.252 0.748 46 H 0.022 0.978 47 H 0.076 0.924 48 H 0.060 0.940 49 H 0.054 0.946 50 H 0.050 0.950 51 H 0.080 0.920 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.776 -8.986 -0.743 16.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.124 4.124 3 H 0.127 0.873 4 C -0.062 4.062 5 C -0.127 4.127 6 C -0.167 4.167 7 N -0.211 5.211 8 C -0.110 4.110 9 N -0.173 5.173 10 H 0.253 0.747 11 C 0.342 3.658 12 O -0.432 6.432 13 N -0.333 5.333 14 C 0.001 3.999 15 C -0.089 4.089 16 C -0.181 4.181 17 C 0.018 3.982 18 N -0.311 5.311 19 C -0.349 4.349 20 H 0.090 0.910 21 C -0.199 4.199 22 N -0.564 5.564 23 Si 0.733 3.267 24 H -0.212 1.212 25 H -0.218 1.218 26 H -0.207 1.207 27 C 0.057 3.943 28 C -0.101 4.101 29 C -0.180 4.180 30 C -0.005 4.005 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.116 0.884 35 H 0.092 0.908 36 H 0.187 0.813 37 H 0.221 0.779 38 H 0.096 0.904 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.058 0.942 44 H 0.034 0.966 45 H 0.063 0.937 46 H 0.040 0.960 47 H 0.094 0.906 48 H 0.079 0.921 49 H 0.073 0.927 50 H 0.069 0.931 51 H 0.098 0.902 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.988 -8.695 -1.630 15.715 hybrid contribution 0.086 -0.601 -0.147 0.624 sum -12.902 -9.296 -1.778 16.001 Atomic orbital electron populations 1.21903 0.93595 1.01897 1.02939 1.21218 0.96967 1.02104 0.92088 0.87290 1.19828 1.02980 0.96426 0.86929 1.21262 0.90926 1.02568 0.97929 1.22231 1.02134 0.97365 0.94940 1.70286 1.05452 1.26640 1.18747 1.24905 1.00098 0.90607 0.95409 1.43301 1.21515 1.28878 1.23585 0.74692 1.19885 0.79280 0.83729 0.82953 1.90650 1.38858 1.27514 1.86147 1.48543 1.50797 1.29182 1.04799 1.22296 0.99873 0.95428 0.82312 1.22325 0.98158 0.94313 0.94134 1.21613 1.00530 1.01584 0.94373 1.21366 0.91754 0.93076 0.92046 1.44300 1.16126 1.37186 1.33522 1.18949 1.01948 1.01024 1.12954 0.91007 1.24767 0.99231 0.95376 1.00563 1.69910 1.39248 1.06015 1.41197 0.86243 0.80879 0.76949 0.82612 1.21212 1.21775 1.20681 1.21223 0.82877 0.90121 1.00034 1.22626 0.96492 0.96954 0.93995 1.21598 0.97931 0.99824 0.98642 1.22507 0.92661 0.87259 0.98072 0.92702 0.91344 0.92072 0.88378 0.90848 0.81269 0.77910 0.90424 0.92313 0.92009 0.92757 0.92863 0.94174 0.96553 0.93737 0.96030 0.90621 0.92136 0.92674 0.93127 0.90169 0.92245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 8.76 37.16 0.33 -1.37 16 2 C -0.10 -1.54 2.04 -91.77 -0.19 -1.73 16 3 H 0.11 1.91 7.95 -51.93 -0.41 1.50 16 4 C -0.02 -0.32 4.59 -27.88 -0.13 -0.45 16 5 C -0.01 -0.16 5.57 -81.60 -0.45 -0.61 16 6 C -0.02 -0.31 11.79 -17.81 -0.21 -0.52 16 7 N -0.49 -7.72 11.25 -14.66 -0.16 -7.89 16 8 C 0.17 1.95 13.04 -90.37 -1.18 0.77 16 9 N -0.57 -5.80 5.79 -10.30 -0.06 -5.86 16 10 H 0.42 2.80 8.96 -40.82 -0.37 2.44 16 11 C 0.55 9.94 7.27 -10.98 -0.08 9.86 16 12 O -0.55 -11.55 16.18 5.56 0.09 -11.46 16 13 N -0.60 -10.15 3.30 -169.48 -0.56 -10.71 16 14 C 0.12 1.98 6.05 -2.47 -0.01 1.96 16 15 C -0.09 -1.39 1.08 -152.33 -0.16 -1.56 16 16 C -0.12 -1.54 7.54 37.16 0.28 -1.26 16 17 C 0.14 2.95 6.30 -3.26 -0.02 2.93 16 18 N -0.59 -14.35 3.38 -171.00 -0.58 -14.93 16 19 C -0.22 -6.05 10.28 -15.06 -0.15 -6.20 16 20 H 0.07 2.00 7.84 -52.49 -0.41 1.59 16 21 C 0.00 -0.07 5.39 -17.43 -0.09 -0.17 16 22 N -0.92 -26.07 10.82 55.49 0.60 -25.47 16 23 Si 0.90 22.26 29.56 -169.99 -5.03 17.23 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 26 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 27 C 0.18 4.07 4.74 -3.12 -0.01 4.05 16 28 C -0.10 -1.61 1.08 -152.21 -0.16 -1.78 16 29 C -0.12 -1.61 7.59 37.16 0.28 -1.33 16 30 C 0.12 1.79 4.28 -2.50 -0.01 1.78 16 31 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 32 H 0.07 0.78 5.34 -51.93 -0.28 0.51 16 33 H 0.06 0.67 7.08 -51.93 -0.37 0.30 16 34 H 0.10 1.57 7.95 -51.93 -0.41 1.16 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.17 2.87 8.06 -52.49 -0.42 2.45 16 37 H 0.20 1.39 8.06 -52.49 -0.42 0.96 16 38 H 0.08 1.38 7.16 -51.93 -0.37 1.01 16 39 H 0.06 0.80 7.97 -51.93 -0.41 0.39 16 40 H 0.06 0.78 7.20 -51.93 -0.37 0.41 16 41 H 0.05 0.58 7.21 -51.93 -0.37 0.21 16 42 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.04 0.85 7.38 -51.93 -0.38 0.46 16 44 H 0.02 0.35 7.89 -51.93 -0.41 -0.06 16 45 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 46 H 0.02 0.53 7.93 -51.93 -0.41 0.12 16 47 H 0.08 1.89 6.00 -51.93 -0.31 1.58 16 48 H 0.06 0.81 7.18 -51.93 -0.37 0.44 16 49 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 50 H 0.05 0.55 7.21 -51.93 -0.37 0.18 16 51 H 0.08 1.29 5.85 -51.93 -0.30 0.98 16 52 H 0.06 0.74 7.83 -51.93 -0.41 0.33 16 LS Contribution 397.99 15.07 6.00 6.00 Total: -1.00 -33.70 397.99 -10.12 -43.82 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -8.43 Total: 4.89 kcal Atomic # 6 Polarization: 6.36 SS G_CDS: -1.99 Total: 4.37 kcal Atomic # 7 Polarization: -64.09 SS G_CDS: -0.76 Total: -64.85 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.09 Total: -11.46 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.03 Total: 17.23 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.70 -10.12 -43.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982634193.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.959 kcal (2) G-P(sol) polarization free energy of solvation -33.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds