Wall clock time and date at job start Wed Apr 1 2020 04:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08993 * 109.46998 * 2 1 4 4 C 1.53002 * 109.47259 * 240.00237 * 2 1 3 5 5 C 1.50701 * 109.46850 * 64.99615 * 4 2 1 6 6 C 1.34666 * 126.58676 * 85.02980 * 5 4 2 7 7 N 1.34133 * 108.02149 * 179.97438 * 6 5 4 8 8 C 1.30497 * 109.25455 * 0.02562 * 7 6 5 9 9 N 1.35055 * 108.69905 * 359.76396 * 8 7 6 10 10 H 0.96995 * 126.39623 * 180.27294 * 9 8 7 11 11 C 1.50707 * 109.47238 * 120.00516 * 2 1 3 12 12 O 1.21278 * 119.99859 * 119.99964 * 11 2 1 13 13 N 1.34772 * 119.99531 * 299.99792 * 11 2 1 14 14 C 1.48113 * 127.84033 * 180.02562 * 13 11 2 15 15 C 1.54314 * 104.71506 * 140.22421 * 14 13 11 16 16 C 1.53000 * 112.07457 * 146.93994 * 15 14 13 17 17 C 1.53761 * 109.08209 * 271.63904 * 15 14 13 18 18 N 1.47206 * 106.40542 * 93.19502 * 17 15 14 19 19 C 1.36934 * 126.70321 * 211.29686 * 18 17 15 20 20 H 1.07999 * 119.99905 * 14.16958 * 19 18 17 21 21 C 1.38808 * 119.99813 * 194.17713 * 19 18 17 22 22 N 1.31620 * 120.00236 * 8.82641 * 21 19 18 23 23 Si 1.86803 * 119.99871 * 188.82711 * 21 19 18 24 24 H 1.48504 * 109.46901 * 92.91925 * 23 21 19 25 25 H 1.48504 * 109.47303 * 212.91602 * 23 21 19 26 26 H 1.48501 * 109.46970 * 332.91846 * 23 21 19 27 27 C 1.47205 * 106.58913 * 31.56390 * 18 17 15 28 28 C 1.54032 * 106.26681 * 328.36693 * 27 18 17 29 29 C 1.53007 * 112.77159 * 141.68116 * 28 27 18 30 30 C 1.48114 * 127.84788 * 359.97438 * 13 11 2 31 31 H 1.09011 * 109.46954 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47469 * 299.99409 * 1 2 3 33 33 H 1.09001 * 109.47236 * 60.00112 * 1 2 3 34 34 H 1.08992 * 109.47215 * 184.99855 * 4 2 1 35 35 H 1.08999 * 109.47263 * 305.00284 * 4 2 1 36 36 H 1.08002 * 125.99581 * 359.95971 * 6 5 4 37 37 H 1.07996 * 125.65341 * 180.02562 * 8 7 6 38 38 H 1.09004 * 110.38908 * 21.41408 * 14 13 11 39 39 H 1.09002 * 110.38956 * 259.03056 * 14 13 11 40 40 H 1.09006 * 109.46936 * 182.00833 * 16 15 14 41 41 H 1.08998 * 109.47354 * 302.01102 * 16 15 14 42 42 H 1.08999 * 109.46877 * 62.01540 * 16 15 14 43 43 H 1.09001 * 110.06463 * 333.96381 * 17 15 14 44 44 H 1.08999 * 110.06848 * 212.43609 * 17 15 14 45 45 H 0.96998 * 120.00022 * 180.02562 * 22 21 19 46 46 H 1.08996 * 110.07012 * 87.68761 * 27 18 17 47 47 H 1.09006 * 110.06600 * 209.20984 * 27 18 17 48 48 H 1.09002 * 109.46689 * 301.38317 * 29 28 27 49 49 H 1.08993 * 109.46731 * 61.38189 * 29 28 27 50 50 H 1.09001 * 109.47000 * 181.38038 * 29 28 27 51 51 H 1.08997 * 110.39155 * 338.59635 * 30 13 11 52 52 H 1.09007 * 110.38404 * 100.86150 * 30 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6412 0.0571 -2.4766 6 6 2.3074 1.0927 -3.0219 7 7 1.6242 1.5038 -4.1005 8 6 0.5598 0.7627 -4.2440 9 7 0.5350 -0.1557 -3.2540 10 1 -0.1412 -0.8378 -3.1186 11 6 2.0323 -0.7105 1.2304 12 8 2.7296 -1.6966 1.1190 13 7 1.7067 -0.2501 2.4545 14 6 2.1010 -0.8068 3.7692 15 6 2.3967 0.4286 4.6453 16 6 2.0352 0.1925 6.1131 17 6 3.8714 0.8275 4.4705 18 7 3.9045 1.8398 3.4023 19 6 4.9200 2.0540 2.5090 20 1 5.7007 1.3170 2.3920 21 6 4.9461 3.2186 1.7541 22 7 4.0994 4.1918 2.0160 23 14 6.1827 3.4047 0.3665 24 1 5.5659 2.9601 -0.9092 25 1 6.5866 4.8290 0.2510 26 1 7.3786 2.5727 0.6544 27 6 2.6354 2.5809 3.4861 28 6 1.5832 1.5784 3.9964 29 6 0.5909 2.2085 4.9759 30 6 0.8744 0.9280 2.7905 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 3.1262 -0.7994 -1.2056 35 1 1.6054 -1.7197 -1.2953 36 1 3.2299 1.5179 -2.6550 37 1 -0.1769 0.8639 -5.0272 38 1 2.9943 -1.4233 3.6681 39 1 1.2836 -1.3881 4.1960 40 1 2.2269 1.1004 6.6851 41 1 0.9799 -0.0693 6.1898 42 1 2.6414 -0.6217 6.5101 43 1 4.4620 -0.0416 4.1807 44 1 4.2570 1.2499 5.3983 45 1 4.1174 5.0054 1.4882 46 1 2.7331 3.4122 4.1842 47 1 2.3525 2.9509 2.5005 48 1 1.1325 2.6167 5.8293 49 1 0.0449 3.0083 4.4758 50 1 -0.1113 1.4493 5.3205 51 1 0.8411 1.6216 1.9504 52 1 -0.1335 0.6153 3.0640 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982634193.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:05 Heat of formation + Delta-G solvation = 27.894341 kcal Electronic energy + Delta-G solvation = -33138.821159 eV Core-core repulsion = 29138.902631 eV Total energy + Delta-G solvation = -3999.918529 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -43.04373 -41.85387 -39.98297 -36.42940 -36.08498 -34.58423 -33.35747 -33.05439 -32.56787 -31.04070 -28.25417 -27.66892 -27.47792 -26.81951 -26.51064 -24.52967 -23.50419 -22.48594 -21.71350 -21.49429 -20.19355 -19.22153 -18.94348 -18.66653 -17.71563 -16.97837 -16.89024 -16.50616 -16.17235 -15.72322 -15.60302 -15.27224 -15.02835 -14.78200 -14.58117 -14.47229 -14.39885 -14.32873 -14.00421 -13.83159 -13.54126 -13.45150 -13.31426 -13.15891 -12.92814 -12.82521 -12.77212 -12.53049 -12.44996 -12.29731 -12.17131 -12.09662 -11.91937 -11.79650 -11.46333 -11.11951 -11.07498 -10.98645 -10.95939 -10.76274 -10.70107 -9.60561 -9.37990 -8.80183 -7.92112 -5.23656 1.03849 1.37330 1.41181 1.46677 1.65969 2.04270 2.18023 2.28708 2.43928 3.25335 3.35546 3.56458 3.67003 3.73433 3.81095 3.83215 3.91859 3.92088 4.16257 4.20545 4.25243 4.38375 4.41710 4.44685 4.58191 4.59991 4.65585 4.66437 4.72664 4.77337 4.83149 4.84525 4.85696 4.87811 4.99224 5.02429 5.09069 5.11068 5.17026 5.26811 5.29255 5.32195 5.36719 5.42340 5.47879 5.56316 5.66336 5.69571 5.83949 6.21488 6.59422 6.65949 7.08427 7.10796 7.19766 7.75060 8.46317 9.19437 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009258 B = 0.004961 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3023.762287 B = 5643.123757 C = 7414.019563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.095 4.095 3 H 0.074 0.926 4 C -0.014 4.014 5 C -0.002 4.002 6 C -0.057 4.057 7 N -0.540 5.540 8 C 0.199 3.801 9 N -0.549 5.549 10 H 0.437 0.563 11 C 0.542 3.458 12 O -0.591 6.591 13 N -0.607 5.607 14 C 0.122 3.878 15 C -0.074 4.074 16 C -0.117 4.117 17 C 0.138 3.862 18 N -0.609 5.609 19 C -0.230 4.230 20 H 0.057 0.943 21 C -0.045 4.045 22 N -0.935 5.935 23 Si 0.952 3.048 24 H -0.287 1.287 25 H -0.290 1.290 26 H -0.277 1.277 27 C 0.192 3.808 28 C -0.089 4.089 29 C -0.116 4.116 30 C 0.120 3.880 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.093 0.907 36 H 0.140 0.860 37 H 0.254 0.746 38 H 0.051 0.949 39 H 0.101 0.899 40 H 0.059 0.941 41 H 0.089 0.911 42 H 0.063 0.937 43 H 0.023 0.977 44 H 0.013 0.987 45 H 0.248 0.752 46 H -0.010 1.010 47 H 0.040 0.960 48 H 0.056 0.944 49 H 0.058 0.942 50 H 0.090 0.910 51 H 0.065 0.935 52 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.910 -10.795 -0.125 20.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.116 4.116 3 H 0.092 0.908 4 C -0.053 4.053 5 C -0.119 4.119 6 C -0.204 4.204 7 N -0.260 5.260 8 C -0.086 4.086 9 N -0.155 5.155 10 H 0.279 0.721 11 C 0.332 3.668 12 O -0.472 6.472 13 N -0.337 5.337 14 C 0.000 4.000 15 C -0.076 4.076 16 C -0.174 4.174 17 C 0.012 3.988 18 N -0.333 5.333 19 C -0.359 4.359 20 H 0.075 0.925 21 C -0.240 4.240 22 N -0.584 5.584 23 Si 0.781 3.219 24 H -0.214 1.214 25 H -0.216 1.216 26 H -0.202 1.202 27 C 0.067 3.933 28 C -0.091 4.091 29 C -0.173 4.173 30 C -0.002 4.002 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.112 0.888 36 H 0.158 0.842 37 H 0.269 0.731 38 H 0.070 0.930 39 H 0.119 0.881 40 H 0.079 0.921 41 H 0.107 0.893 42 H 0.082 0.918 43 H 0.042 0.958 44 H 0.031 0.969 45 H 0.057 0.943 46 H 0.007 0.993 47 H 0.058 0.942 48 H 0.075 0.925 49 H 0.077 0.923 50 H 0.109 0.891 51 H 0.083 0.917 52 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -17.152 -10.522 -0.963 20.145 hybrid contribution 1.451 -0.028 -0.336 1.490 sum -15.700 -10.550 -1.299 18.960 Atomic orbital electron populations 1.21849 0.90177 1.03467 1.03710 1.21139 0.99718 0.99525 0.91266 0.90819 1.19671 1.01239 0.97445 0.86979 1.20895 0.91735 1.01552 0.97710 1.22029 1.02504 0.99239 0.96654 1.70219 1.07520 1.28949 1.19279 1.25800 0.98971 0.88575 0.95228 1.43155 1.20777 1.29083 1.22447 0.72117 1.20393 0.78848 0.83517 0.84047 1.90620 1.40440 1.29365 1.86790 1.48703 1.50629 1.29474 1.04903 1.22429 1.00398 0.95224 0.81976 1.22283 0.94297 0.94063 0.96981 1.21614 1.02886 1.02053 0.90865 1.21577 0.95394 0.91359 0.90485 1.44526 1.16437 1.38223 1.34078 1.19057 1.02537 1.00610 1.13725 0.92472 1.25316 1.00916 0.95357 1.02363 1.70062 1.40365 1.06103 1.41838 0.85466 0.79367 0.76710 0.80320 1.21403 1.21635 1.20191 1.21051 0.83867 0.90884 0.97530 1.22531 0.95788 0.95389 0.95438 1.21596 0.97471 1.00894 0.97384 1.22646 0.94279 0.86390 0.96902 0.90565 0.90771 0.91128 0.91517 0.88806 0.84196 0.73065 0.93040 0.88108 0.92149 0.89260 0.91838 0.95850 0.96876 0.94287 0.99257 0.94170 0.92505 0.92313 0.89086 0.91677 0.87364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.82 8.76 71.98 0.63 -2.19 16 2 C -0.09 -2.91 2.04 -11.54 -0.02 -2.93 16 3 H 0.07 2.79 7.95 -2.39 -0.02 2.77 16 4 C -0.01 -0.41 4.59 29.85 0.14 -0.27 16 5 C 0.00 -0.06 5.57 40.95 0.23 0.17 16 6 C -0.06 -1.96 11.79 83.52 0.98 -0.98 16 7 N -0.54 -16.95 11.25 -200.30 -2.25 -19.21 16 8 C 0.20 3.95 13.04 180.26 2.35 6.30 16 9 N -0.55 -9.82 5.79 -186.49 -1.08 -10.90 16 10 H 0.44 4.15 8.96 -92.71 -0.83 3.32 16 11 C 0.54 19.70 7.27 87.66 0.64 20.34 16 12 O -0.59 -25.31 16.18 -3.02 -0.05 -25.36 16 13 N -0.61 -19.82 3.30 -808.52 -2.67 -22.50 16 14 C 0.12 3.65 6.05 86.52 0.52 4.17 16 15 C -0.07 -2.24 1.08 -50.77 -0.05 -2.30 16 16 C -0.12 -2.45 7.54 71.98 0.54 -1.90 16 17 C 0.14 5.78 6.30 86.50 0.54 6.32 16 18 N -0.61 -31.21 3.38 -694.93 -2.35 -33.56 16 19 C -0.23 -13.37 10.28 84.03 0.86 -12.50 16 20 H 0.06 3.40 7.84 -2.91 -0.02 3.38 16 21 C -0.04 -2.62 5.39 84.86 0.46 -2.16 16 22 N -0.94 -56.02 10.82 21.65 0.23 -55.79 16 23 Si 0.95 48.23 29.56 68.60 2.03 50.26 16 24 H -0.29 -14.52 7.11 99.48 0.71 -13.82 16 25 H -0.29 -14.56 7.11 99.48 0.71 -13.85 16 26 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 27 C 0.19 8.85 4.74 86.59 0.41 9.26 16 28 C -0.09 -2.78 1.08 -50.69 -0.05 -2.84 16 29 C -0.12 -2.62 7.59 71.98 0.55 -2.08 16 30 C 0.12 3.36 4.28 86.49 0.37 3.73 16 31 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 32 H 0.07 1.47 5.34 -2.39 -0.01 1.46 16 33 H 0.07 1.35 7.08 -2.39 -0.02 1.33 16 34 H 0.07 2.33 7.95 -2.39 -0.02 2.31 16 35 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.14 5.40 8.06 -2.91 -0.02 5.37 16 37 H 0.25 2.23 8.06 -2.91 -0.02 2.21 16 38 H 0.05 1.82 7.16 -2.38 -0.02 1.81 16 39 H 0.10 2.24 7.97 -2.39 -0.02 2.22 16 40 H 0.06 1.32 7.20 -2.38 -0.02 1.30 16 41 H 0.09 1.32 7.21 -2.39 -0.02 1.31 16 42 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.02 1.03 7.38 -2.39 -0.02 1.02 16 44 H 0.01 0.57 7.89 -2.39 -0.02 0.55 16 45 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 46 H -0.01 -0.54 7.93 -2.39 -0.02 -0.56 16 47 H 0.04 2.11 6.00 -2.38 -0.01 2.10 16 48 H 0.06 1.35 7.18 -2.39 -0.02 1.34 16 49 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 50 H 0.09 1.39 7.21 -2.39 -0.02 1.38 16 51 H 0.06 2.06 5.85 -2.39 -0.01 2.04 16 52 H 0.11 2.09 7.83 -2.38 -0.02 2.07 16 Total: -1.00 -82.03 397.99 3.05 -78.98 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: 0.10 Total: 17.93 kcal Atomic # 6 Polarization: 11.05 SS G_CDS: 9.10 Total: 20.14 kcal Atomic # 7 Polarization: -133.83 SS G_CDS: -8.12 Total: -141.95 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: -0.05 Total: -25.36 kcal Atomic # 14 Polarization: 48.23 SS G_CDS: 2.03 Total: 50.26 kcal Total: -82.03 3.05 -78.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982634193.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.875 kcal (2) G-P(sol) polarization free energy of solvation -82.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds