Wall clock time and date at job start Wed Apr 1 2020 04:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09003 * 109.47060 * 2 1 4 4 C 1.53006 * 109.47236 * 120.00081 * 2 1 3 5 5 C 1.50703 * 109.46840 * 295.00049 * 4 2 1 6 6 O 1.21278 * 119.99940 * 359.97438 * 5 4 2 7 7 N 1.34778 * 119.99981 * 179.97438 * 5 4 2 8 8 C 1.48108 * 127.84076 * 0.02562 * 7 5 4 9 9 C 1.56820 * 104.74269 * 220.29319 * 8 7 5 10 10 C 1.53001 * 112.92962 * 96.97411 * 9 8 7 11 11 C 1.54055 * 109.10849 * 223.62831 * 9 8 7 12 12 N 1.47199 * 106.25467 * 129.74416 * 11 9 8 13 13 C 1.36940 * 126.70550 * 148.61119 * 12 11 9 14 14 H 1.07994 * 119.99666 * 345.37226 * 13 12 11 15 15 C 1.38804 * 120.00008 * 165.36887 * 13 12 11 16 16 N 1.31622 * 120.00247 * 350.70749 * 15 13 12 17 17 Si 1.86810 * 119.99877 * 170.70703 * 15 13 12 18 18 H 1.48499 * 109.47137 * 59.99982 * 17 15 13 19 19 H 1.48496 * 109.47053 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.46625 * 300.00079 * 17 15 13 21 21 C 1.47206 * 106.59281 * 328.35081 * 12 11 9 22 22 C 1.53757 * 106.40693 * 31.57100 * 21 12 11 23 23 C 1.52996 * 112.06948 * 103.41499 * 22 21 12 24 24 C 1.48107 * 127.84645 * 180.02562 * 7 5 4 25 25 N 1.46496 * 109.47295 * 239.99859 * 2 1 3 26 26 C 1.34947 * 126.03920 * 325.00073 * 25 2 1 27 27 C 1.35313 * 107.74889 * 179.97438 * 26 25 2 28 28 C 1.39870 * 107.92079 * 0.02562 * 27 26 25 29 29 N 1.30839 * 108.20173 * 359.73343 * 28 27 26 30 30 H 1.09007 * 109.47306 * 59.99879 * 1 2 3 31 31 H 1.08999 * 109.47504 * 180.02562 * 1 2 3 32 32 H 1.09009 * 109.47240 * 300.00096 * 1 2 3 33 33 H 1.08994 * 109.47132 * 175.00152 * 4 2 1 34 34 H 1.08995 * 109.46935 * 54.99916 * 4 2 1 35 35 H 1.09004 * 110.39361 * 338.59028 * 8 7 5 36 36 H 1.08997 * 110.39252 * 100.86228 * 8 7 5 37 37 H 1.09002 * 109.47072 * 303.34573 * 10 9 8 38 38 H 1.08996 * 109.47601 * 63.34429 * 10 9 8 39 39 H 1.09005 * 109.47086 * 183.35058 * 10 9 8 40 40 H 1.09001 * 110.20919 * 10.51950 * 11 9 8 41 41 H 1.09004 * 110.07662 * 248.89809 * 11 9 8 42 42 H 0.97001 * 120.00021 * 180.02562 * 16 15 13 43 43 H 1.08999 * 110.06677 * 150.80478 * 21 12 11 44 44 H 1.08995 * 110.06672 * 272.32845 * 21 12 11 45 45 H 1.09002 * 109.46946 * 61.01891 * 23 22 21 46 46 H 1.09000 * 109.47073 * 181.00985 * 23 22 21 47 47 H 1.08991 * 109.47586 * 301.01443 * 23 22 21 48 48 H 1.08996 * 110.38730 * 21.40807 * 24 7 5 49 49 H 1.09001 * 110.48201 * 259.07717 * 24 7 5 50 50 H 1.08006 * 126.12456 * 359.96153 * 26 25 2 51 51 H 1.07999 * 126.04287 * 180.02562 * 27 26 25 52 52 H 1.08000 * 125.89968 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6412 0.0570 2.4766 6 8 1.0116 1.0874 2.3632 7 7 1.9844 -0.3919 3.7002 8 6 2.7454 -1.6167 4.0382 9 6 2.0236 -2.1987 5.3030 10 6 1.0187 -3.3008 4.9615 11 6 3.0836 -2.6445 6.3281 12 7 2.6960 -2.0377 7.6120 13 6 2.9105 -2.5572 8.8607 14 1 3.1896 -3.5944 8.9733 15 6 2.7691 -1.7508 9.9816 16 7 2.6102 -0.4517 9.8419 17 14 2.8043 -2.5094 11.6884 18 1 4.1058 -3.1925 11.8997 19 1 2.6331 -1.4430 12.7076 20 1 1.7013 -3.4956 11.8145 21 6 2.0385 -0.7602 7.2916 22 6 1.3404 -0.9589 5.9362 23 6 -0.1702 -1.1471 6.0898 24 6 1.6861 0.2275 5.0121 25 7 2.0183 -0.6906 -1.1961 26 6 1.4402 -1.7559 -1.7895 27 6 2.1961 -2.0923 -2.8601 28 6 3.2735 -1.2025 -2.9230 29 7 3.1649 -0.3585 -1.9291 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 3.1262 -0.7995 1.2056 34 1 1.6053 -1.7198 1.2952 35 1 2.6949 -2.3336 3.2186 36 1 3.7830 -1.3695 4.2621 37 1 0.2867 -2.9175 4.2506 38 1 1.5442 -4.1479 4.5207 39 1 0.5091 -3.6220 5.8700 40 1 4.0696 -2.2891 6.0289 41 1 3.0873 -3.7312 6.4140 42 1 2.5118 0.1119 10.6253 43 1 1.3037 -0.5151 8.0585 44 1 2.7811 0.0342 7.2170 45 1 -0.6020 -0.2587 6.5506 46 1 -0.6187 -1.3018 5.1085 47 1 -0.3661 -2.0148 6.7197 48 1 0.8354 0.9038 4.9280 49 1 2.5586 0.7610 5.3892 50 1 0.5362 -2.2514 -1.4673 51 1 2.0020 -2.9044 -3.5451 52 1 4.0572 -1.2084 -3.6660 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982702678.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:52 Heat of formation + Delta-G solvation = 77.589497 kcal Electronic energy + Delta-G solvation = -31690.191106 eV Core-core repulsion = 27692.427521 eV Total energy + Delta-G solvation = -3997.763585 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.44599 -40.49656 -38.88839 -35.61601 -35.03704 -32.91345 -31.79499 -30.65808 -30.54842 -30.01644 -28.63011 -27.10851 -25.73084 -25.53825 -25.05112 -23.52934 -22.16945 -21.26379 -20.31226 -20.20122 -19.11258 -17.89561 -17.75957 -16.83193 -16.35571 -16.06858 -15.73882 -15.03610 -14.84669 -14.61357 -14.48762 -14.35846 -13.82825 -13.76644 -13.46370 -13.39775 -13.24629 -13.07711 -12.86117 -12.63473 -12.32165 -12.14057 -12.05215 -11.91681 -11.77435 -11.70324 -11.48822 -11.34478 -11.26710 -10.87673 -10.86003 -10.82582 -10.63071 -10.22867 -10.02204 -10.01108 -9.85572 -9.76309 -9.65897 -9.57407 -8.82176 -8.67555 -8.58932 -6.88387 -5.83317 -3.17287 1.68798 2.18305 2.56014 2.65642 3.05977 3.35395 3.40598 3.41433 4.19066 4.37817 4.40281 4.44199 4.61143 4.66033 4.75184 4.83318 4.94350 5.06976 5.15162 5.17614 5.38384 5.40656 5.43003 5.47228 5.48001 5.49831 5.54566 5.60085 5.67510 5.68921 5.78697 5.80083 5.90524 5.95516 6.02923 6.08695 6.13907 6.18977 6.24438 6.37195 6.43263 6.44579 6.58524 6.66904 6.74140 6.81555 6.86895 7.32956 7.49964 7.52402 7.62163 7.69413 8.10287 8.19070 9.10015 9.72164 10.43910 11.30357 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.024377 B = 0.002345 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.361311 B =11937.027498 C =12287.664049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.176 3.824 3 H 0.111 0.889 4 C -0.149 4.149 5 C 0.539 3.461 6 O -0.546 6.546 7 N -0.614 5.614 8 C 0.107 3.893 9 C -0.079 4.079 10 C -0.120 4.120 11 C 0.143 3.857 12 N -0.592 5.592 13 C -0.231 4.231 14 H 0.075 0.925 15 C -0.003 4.003 16 N -0.915 5.915 17 Si 0.910 3.090 18 H -0.284 1.284 19 H -0.290 1.290 20 H -0.285 1.285 21 C 0.178 3.822 22 C -0.093 4.093 23 C -0.119 4.119 24 C 0.118 3.882 25 N -0.365 5.365 26 C 0.056 3.944 27 C -0.278 4.278 28 C 0.041 3.959 29 N -0.297 5.297 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.049 0.951 38 H 0.049 0.951 39 H 0.066 0.934 40 H 0.020 0.980 41 H 0.044 0.956 42 H 0.255 0.745 43 H 0.078 0.922 44 H 0.025 0.975 45 H 0.051 0.949 46 H 0.043 0.957 47 H 0.062 0.938 48 H 0.078 0.922 49 H 0.076 0.924 50 H 0.171 0.829 51 H 0.145 0.855 52 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.898 -3.852 -21.219 21.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.074 3.926 3 H 0.129 0.871 4 C -0.190 4.190 5 C 0.327 3.673 6 O -0.425 6.425 7 N -0.346 5.346 8 C -0.016 4.016 9 C -0.081 4.081 10 C -0.177 4.177 11 C 0.016 3.984 12 N -0.315 5.315 13 C -0.359 4.359 14 H 0.093 0.907 15 C -0.200 4.200 16 N -0.561 5.561 17 Si 0.740 3.260 18 H -0.210 1.210 19 H -0.216 1.216 20 H -0.211 1.211 21 C 0.052 3.948 22 C -0.096 4.096 23 C -0.176 4.176 24 C -0.004 4.004 25 N -0.148 5.148 26 C -0.091 4.091 27 C -0.308 4.308 28 C -0.145 4.145 29 N -0.118 5.118 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.122 0.878 33 H 0.119 0.881 34 H 0.116 0.884 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.085 0.915 40 H 0.038 0.962 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.096 0.904 44 H 0.043 0.957 45 H 0.071 0.929 46 H 0.062 0.938 47 H 0.081 0.919 48 H 0.097 0.903 49 H 0.095 0.905 50 H 0.188 0.812 51 H 0.163 0.837 52 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -3.781 -2.098 -20.413 20.866 hybrid contribution -0.119 -1.189 0.497 1.294 sum -3.900 -3.287 -19.917 20.559 Atomic orbital electron populations 1.22325 0.92106 1.03001 1.05116 1.20948 0.95301 0.96942 0.79397 0.87078 1.22028 1.04033 1.00675 0.92262 1.19720 0.79300 0.85289 0.82961 1.90680 1.41157 1.24816 1.85875 1.49017 1.54459 1.25661 1.05480 1.23126 0.95431 0.85596 0.97419 1.22754 0.96264 0.95196 0.93877 1.21607 0.97970 0.96682 1.01475 1.21427 0.93439 0.96882 0.86628 1.44431 1.66200 1.20740 1.00156 1.18926 1.41976 0.93817 0.81223 0.90704 1.24864 1.01915 0.95262 0.98001 1.69912 1.54900 1.02591 1.28665 0.86235 0.77971 0.77924 0.83830 1.21027 1.21581 1.21115 1.21272 0.95007 0.88236 0.90265 1.22517 0.96212 0.92775 0.98052 1.21631 0.93739 1.01923 1.00292 1.22627 1.01414 0.95791 0.80554 1.48977 1.19501 1.23955 1.22338 1.22520 0.99866 0.91305 0.95361 1.21507 0.99345 1.06638 1.03302 1.23894 0.99305 0.93931 0.97359 1.77405 1.03042 1.23710 1.07622 0.91657 0.92127 0.87811 0.88145 0.88381 0.91023 0.90320 0.93216 0.93162 0.91513 0.96196 0.93745 0.93513 0.90402 0.95689 0.92944 0.93786 0.91918 0.90302 0.90541 0.81185 0.83681 0.80185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.51 8.57 37.15 0.32 -1.19 16 2 C 0.18 1.83 3.05 -67.93 -0.21 1.62 16 3 H 0.11 1.33 7.95 -51.93 -0.41 0.92 16 4 C -0.15 -1.53 4.48 -27.88 -0.12 -1.65 16 5 C 0.54 7.20 7.63 -10.98 -0.08 7.12 16 6 O -0.55 -8.72 14.23 5.56 0.08 -8.64 16 7 N -0.61 -8.53 3.31 -167.86 -0.56 -9.08 16 8 C 0.11 1.39 6.17 -1.09 -0.01 1.38 16 9 C -0.08 -1.20 1.14 -150.80 -0.17 -1.37 16 10 C -0.12 -1.59 7.61 37.16 0.28 -1.31 16 11 C 0.14 2.69 6.50 -3.11 -0.02 2.67 16 12 N -0.59 -14.01 3.38 -171.00 -0.58 -14.59 16 13 C -0.23 -6.11 10.28 -15.06 -0.15 -6.26 16 14 H 0.08 1.92 7.85 -52.49 -0.41 1.51 16 15 C 0.00 -0.08 5.38 -17.43 -0.09 -0.18 16 16 N -0.91 -25.84 10.87 55.49 0.60 -25.24 16 17 Si 0.91 21.32 29.56 -169.99 -5.03 16.30 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 C 0.18 3.96 4.82 -3.26 -0.02 3.94 16 22 C -0.09 -1.58 1.07 -152.33 -0.16 -1.74 16 23 C -0.12 -1.88 7.42 37.16 0.28 -1.60 16 24 C 0.12 1.88 6.22 -2.47 -0.02 1.87 16 25 N -0.37 -3.90 3.53 -54.87 -0.19 -4.09 16 26 C 0.06 0.49 10.59 -17.22 -0.18 0.30 16 27 C -0.28 -2.37 10.80 -40.01 -0.43 -2.81 16 28 C 0.04 0.40 12.03 -17.36 -0.21 0.19 16 29 N -0.30 -3.63 12.58 30.62 0.39 -3.24 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.44 7.16 -51.93 -0.37 0.07 16 32 H 0.10 1.13 5.95 -51.92 -0.31 0.82 16 33 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.10 0.85 7.95 -51.93 -0.41 0.44 16 35 H 0.07 0.75 7.11 -51.93 -0.37 0.38 16 36 H 0.08 1.04 7.24 -51.93 -0.38 0.67 16 37 H 0.05 0.60 7.17 -51.93 -0.37 0.23 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.99 7.09 -51.93 -0.37 0.62 16 40 H 0.02 0.38 7.16 -51.93 -0.37 0.01 16 41 H 0.04 0.81 7.88 -51.93 -0.41 0.40 16 42 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 43 H 0.08 1.97 6.49 -51.93 -0.34 1.63 16 44 H 0.03 0.61 7.10 -51.93 -0.37 0.24 16 45 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.04 0.62 7.16 -51.93 -0.37 0.25 16 47 H 0.06 1.05 7.10 -51.93 -0.37 0.69 16 48 H 0.08 1.28 7.62 -51.93 -0.40 0.88 16 49 H 0.08 1.29 7.15 -51.93 -0.37 0.92 16 50 H 0.17 0.99 7.26 -52.48 -0.38 0.61 16 51 H 0.15 0.90 8.06 -52.49 -0.42 0.48 16 52 H 0.18 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 399.91 15.07 6.03 6.03 Total: -1.00 -31.17 399.91 -8.71 -39.88 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -8.45 Total: 1.70 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -1.00 Total: 0.98 kcal Atomic # 7 Polarization: -55.90 SS G_CDS: -0.34 Total: -56.24 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: 0.08 Total: -8.64 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.30 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.17 -8.71 -39.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982702678.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.473 kcal (2) G-P(sol) polarization free energy of solvation -31.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds