Wall clock time and date at job start Wed Apr 1 2020 04:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09003 * 109.47060 * 2 1 4 4 C 1.53006 * 109.47236 * 120.00081 * 2 1 3 5 5 C 1.50703 * 109.46840 * 295.00049 * 4 2 1 6 6 O 1.21278 * 119.99940 * 359.97438 * 5 4 2 7 7 N 1.34778 * 119.99981 * 179.97438 * 5 4 2 8 8 C 1.48108 * 127.84076 * 0.02562 * 7 5 4 9 9 C 1.56820 * 104.74269 * 220.29319 * 8 7 5 10 10 C 1.53001 * 112.92962 * 96.97411 * 9 8 7 11 11 C 1.54055 * 109.10849 * 223.62831 * 9 8 7 12 12 N 1.47199 * 106.25467 * 129.74416 * 11 9 8 13 13 C 1.36940 * 126.70550 * 148.61119 * 12 11 9 14 14 H 1.07994 * 119.99666 * 345.37226 * 13 12 11 15 15 C 1.38804 * 120.00008 * 165.36887 * 13 12 11 16 16 N 1.31622 * 120.00247 * 350.70749 * 15 13 12 17 17 Si 1.86810 * 119.99877 * 170.70703 * 15 13 12 18 18 H 1.48499 * 109.47137 * 59.99982 * 17 15 13 19 19 H 1.48496 * 109.47053 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.46625 * 300.00079 * 17 15 13 21 21 C 1.47206 * 106.59281 * 328.35081 * 12 11 9 22 22 C 1.53757 * 106.40693 * 31.57100 * 21 12 11 23 23 C 1.52996 * 112.06948 * 103.41499 * 22 21 12 24 24 C 1.48107 * 127.84645 * 180.02562 * 7 5 4 25 25 N 1.46496 * 109.47295 * 239.99859 * 2 1 3 26 26 C 1.34947 * 126.03920 * 325.00073 * 25 2 1 27 27 C 1.35313 * 107.74889 * 179.97438 * 26 25 2 28 28 C 1.39870 * 107.92079 * 0.02562 * 27 26 25 29 29 N 1.30839 * 108.20173 * 359.73343 * 28 27 26 30 30 H 1.09007 * 109.47306 * 59.99879 * 1 2 3 31 31 H 1.08999 * 109.47504 * 180.02562 * 1 2 3 32 32 H 1.09009 * 109.47240 * 300.00096 * 1 2 3 33 33 H 1.08994 * 109.47132 * 175.00152 * 4 2 1 34 34 H 1.08995 * 109.46935 * 54.99916 * 4 2 1 35 35 H 1.09004 * 110.39361 * 338.59028 * 8 7 5 36 36 H 1.08997 * 110.39252 * 100.86228 * 8 7 5 37 37 H 1.09002 * 109.47072 * 303.34573 * 10 9 8 38 38 H 1.08996 * 109.47601 * 63.34429 * 10 9 8 39 39 H 1.09005 * 109.47086 * 183.35058 * 10 9 8 40 40 H 1.09001 * 110.20919 * 10.51950 * 11 9 8 41 41 H 1.09004 * 110.07662 * 248.89809 * 11 9 8 42 42 H 0.97001 * 120.00021 * 180.02562 * 16 15 13 43 43 H 1.08999 * 110.06677 * 150.80478 * 21 12 11 44 44 H 1.08995 * 110.06672 * 272.32845 * 21 12 11 45 45 H 1.09002 * 109.46946 * 61.01891 * 23 22 21 46 46 H 1.09000 * 109.47073 * 181.00985 * 23 22 21 47 47 H 1.08991 * 109.47586 * 301.01443 * 23 22 21 48 48 H 1.08996 * 110.38730 * 21.40807 * 24 7 5 49 49 H 1.09001 * 110.48201 * 259.07717 * 24 7 5 50 50 H 1.08006 * 126.12456 * 359.96153 * 26 25 2 51 51 H 1.07999 * 126.04287 * 180.02562 * 27 26 25 52 52 H 1.08000 * 125.89968 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6412 0.0570 2.4766 6 8 1.0116 1.0874 2.3632 7 7 1.9844 -0.3919 3.7002 8 6 2.7454 -1.6167 4.0382 9 6 2.0236 -2.1987 5.3030 10 6 1.0187 -3.3008 4.9615 11 6 3.0836 -2.6445 6.3281 12 7 2.6960 -2.0377 7.6120 13 6 2.9105 -2.5572 8.8607 14 1 3.1896 -3.5944 8.9733 15 6 2.7691 -1.7508 9.9816 16 7 2.6102 -0.4517 9.8419 17 14 2.8043 -2.5094 11.6884 18 1 4.1058 -3.1925 11.8997 19 1 2.6331 -1.4430 12.7076 20 1 1.7013 -3.4956 11.8145 21 6 2.0385 -0.7602 7.2916 22 6 1.3404 -0.9589 5.9362 23 6 -0.1702 -1.1471 6.0898 24 6 1.6861 0.2275 5.0121 25 7 2.0183 -0.6906 -1.1961 26 6 1.4402 -1.7559 -1.7895 27 6 2.1961 -2.0923 -2.8601 28 6 3.2735 -1.2025 -2.9230 29 7 3.1649 -0.3585 -1.9291 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 3.1262 -0.7995 1.2056 34 1 1.6053 -1.7198 1.2952 35 1 2.6949 -2.3336 3.2186 36 1 3.7830 -1.3695 4.2621 37 1 0.2867 -2.9175 4.2506 38 1 1.5442 -4.1479 4.5207 39 1 0.5091 -3.6220 5.8700 40 1 4.0696 -2.2891 6.0289 41 1 3.0873 -3.7312 6.4140 42 1 2.5118 0.1119 10.6253 43 1 1.3037 -0.5151 8.0585 44 1 2.7811 0.0342 7.2170 45 1 -0.6020 -0.2587 6.5506 46 1 -0.6187 -1.3018 5.1085 47 1 -0.3661 -2.0148 6.7197 48 1 0.8354 0.9038 4.9280 49 1 2.5586 0.7610 5.3892 50 1 0.5362 -2.2514 -1.4673 51 1 2.0020 -2.9044 -3.5451 52 1 4.0572 -1.2084 -3.6660 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982702678.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:51 Heat of formation + Delta-G solvation = 59.464180 kcal Electronic energy + Delta-G solvation = -31690.977079 eV Core-core repulsion = 27692.427521 eV Total energy + Delta-G solvation = -3998.549558 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.17081 -41.70910 -40.08392 -36.77348 -36.22929 -34.50577 -33.16456 -32.34051 -31.32845 -30.71203 -29.51423 -28.51594 -27.06870 -26.85168 -26.57369 -24.43645 -23.62496 -21.93278 -21.77567 -21.02925 -20.18560 -19.30693 -18.74730 -18.43106 -17.36298 -17.13773 -16.82454 -16.53490 -15.99167 -15.89856 -15.66683 -15.44574 -15.09338 -14.81907 -14.66031 -14.59597 -14.29301 -13.90274 -13.83450 -13.64102 -13.54099 -13.45741 -13.31356 -13.17080 -13.13238 -12.77750 -12.66971 -12.54275 -12.46352 -12.40964 -12.22250 -12.10513 -11.91060 -11.77671 -11.55395 -11.41576 -11.33297 -11.16320 -10.90691 -10.66225 -10.36680 -9.78116 -9.48322 -8.83020 -7.88332 -5.23055 1.02020 1.42340 1.46789 1.48938 1.51474 1.55350 2.01181 2.03155 2.50230 3.30194 3.32509 3.40241 3.45842 3.61746 3.71379 3.91261 3.93328 4.02243 4.11147 4.13524 4.16604 4.21155 4.29774 4.41352 4.42899 4.47042 4.57162 4.70770 4.75212 4.77121 4.82198 4.83482 4.85532 4.91244 4.91846 4.98883 4.99471 5.03539 5.17943 5.20666 5.21468 5.24131 5.30524 5.38281 5.49684 5.53452 5.62266 5.76307 5.81158 6.18600 6.23104 6.53140 6.84622 7.03140 7.07968 7.76681 8.48312 9.24347 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.024377 B = 0.002345 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.361311 B =11937.027498 C =12287.664049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.179 3.821 3 H 0.084 0.916 4 C -0.135 4.135 5 C 0.540 3.460 6 O -0.574 6.574 7 N -0.612 5.612 8 C 0.114 3.886 9 C -0.070 4.070 10 C -0.114 4.114 11 C 0.138 3.862 12 N -0.615 5.615 13 C -0.237 4.237 14 H 0.081 0.919 15 C -0.062 4.062 16 N -0.947 5.947 17 Si 0.973 3.027 18 H -0.276 1.276 19 H -0.298 1.298 20 H -0.277 1.277 21 C 0.189 3.811 22 C -0.085 4.085 23 C -0.110 4.110 24 C 0.124 3.876 25 N -0.374 5.374 26 C 0.056 3.944 27 C -0.284 4.284 28 C 0.036 3.964 29 N -0.347 5.347 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.102 0.898 34 H 0.128 0.872 35 H 0.112 0.888 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.047 0.953 40 H 0.020 0.980 41 H 0.053 0.947 42 H 0.247 0.753 43 H 0.038 0.962 44 H -0.009 1.009 45 H 0.044 0.956 46 H 0.069 0.931 47 H 0.050 0.950 48 H 0.074 0.926 49 H 0.058 0.942 50 H 0.202 0.798 51 H 0.169 0.831 52 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.622 -6.788 -23.966 25.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.077 3.923 3 H 0.102 0.898 4 C -0.176 4.176 5 C 0.330 3.670 6 O -0.455 6.455 7 N -0.344 5.344 8 C -0.008 4.008 9 C -0.072 4.072 10 C -0.171 4.171 11 C 0.012 3.988 12 N -0.339 5.339 13 C -0.366 4.366 14 H 0.099 0.901 15 C -0.255 4.255 16 N -0.595 5.595 17 Si 0.802 3.198 18 H -0.202 1.202 19 H -0.224 1.224 20 H -0.203 1.203 21 C 0.063 3.937 22 C -0.087 4.087 23 C -0.167 4.167 24 C 0.001 3.999 25 N -0.157 5.157 26 C -0.090 4.090 27 C -0.313 4.313 28 C -0.149 4.149 29 N -0.168 5.168 30 H 0.084 0.916 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.120 0.880 34 H 0.146 0.854 35 H 0.130 0.870 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.066 0.934 40 H 0.037 0.963 41 H 0.072 0.928 42 H 0.056 0.944 43 H 0.057 0.943 44 H 0.009 0.991 45 H 0.063 0.937 46 H 0.088 0.912 47 H 0.070 0.930 48 H 0.093 0.907 49 H 0.076 0.924 50 H 0.219 0.781 51 H 0.186 0.814 52 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -4.493 -5.071 -23.207 24.176 hybrid contribution 0.160 -0.263 1.280 1.316 sum -4.333 -5.334 -21.927 22.979 Atomic orbital electron populations 1.22235 0.90984 1.04370 1.04158 1.20807 0.96043 0.95736 0.79745 0.89784 1.21963 1.04217 1.01285 0.90115 1.20285 0.78359 0.85018 0.83311 1.90683 1.42360 1.26211 1.86213 1.48994 1.54720 1.25847 1.04855 1.23118 0.94543 0.85709 0.97468 1.22705 0.95658 0.94996 0.93818 1.21575 0.97703 0.96589 1.01242 1.21644 0.94556 0.97137 0.85414 1.44719 1.66725 1.21252 1.01155 1.19317 1.40510 0.94131 0.82659 0.90132 1.25652 1.02681 0.95684 1.01528 1.70121 1.56710 1.03810 1.28869 0.85237 0.78268 0.76900 0.79440 1.20194 1.22438 1.20301 1.21004 0.93426 0.87141 0.92160 1.22321 0.96667 0.94498 0.95214 1.21548 0.92744 1.01089 1.01362 1.22324 1.00467 0.95267 0.81847 1.48945 1.19595 1.24711 1.22450 1.23106 1.00500 0.90389 0.94969 1.21875 0.98772 1.06956 1.03683 1.24413 1.00093 0.93420 0.96973 1.77370 1.04620 1.25567 1.09219 0.91586 0.89526 0.89756 0.87957 0.85429 0.86959 0.90784 0.91306 0.90498 0.93402 0.96256 0.92838 0.94393 0.94306 0.99091 0.93692 0.91196 0.93048 0.90734 0.92392 0.78096 0.81360 0.78090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 8.57 71.98 0.62 -1.87 16 2 C 0.18 3.37 3.05 44.99 0.14 3.51 16 3 H 0.08 2.02 7.95 -2.39 -0.02 2.00 16 4 C -0.14 -2.34 4.48 29.85 0.13 -2.21 16 5 C 0.54 13.34 7.63 87.66 0.67 14.01 16 6 O -0.57 -17.90 14.23 -3.02 -0.04 -17.94 16 7 N -0.61 -15.84 3.31 -803.39 -2.66 -18.51 16 8 C 0.11 2.60 6.17 87.41 0.54 3.14 16 9 C -0.07 -1.98 1.14 -49.78 -0.06 -2.03 16 10 C -0.11 -2.58 7.61 71.98 0.55 -2.03 16 11 C 0.14 5.07 6.50 86.60 0.56 5.64 16 12 N -0.61 -29.80 3.38 -694.91 -2.35 -32.15 16 13 C -0.24 -12.76 10.28 84.03 0.86 -11.89 16 14 H 0.08 4.13 7.85 -2.91 -0.02 4.11 16 15 C -0.06 -3.43 5.38 84.86 0.46 -2.97 16 16 N -0.95 -56.16 10.87 21.65 0.24 -55.93 16 17 Si 0.97 44.78 29.56 68.60 2.03 46.81 16 18 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 19 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 20 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 21 C 0.19 8.83 4.82 86.50 0.42 9.25 16 22 C -0.08 -2.88 1.07 -50.77 -0.05 -2.93 16 23 C -0.11 -3.43 7.42 71.98 0.53 -2.89 16 24 C 0.12 3.98 6.22 86.52 0.54 4.52 16 25 N -0.37 -7.09 3.53 -327.50 -1.15 -8.24 16 26 C 0.06 0.76 10.59 83.54 0.88 1.65 16 27 C -0.28 -3.88 10.80 21.99 0.24 -3.64 16 28 C 0.04 0.62 12.03 85.24 1.02 1.65 16 29 N -0.35 -7.99 12.58 -57.02 -0.72 -8.70 16 30 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.09 0.88 7.16 -2.39 -0.02 0.86 16 32 H 0.08 1.70 5.95 -2.38 -0.01 1.69 16 33 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.13 1.50 7.95 -2.39 -0.02 1.48 16 35 H 0.11 1.72 7.11 -2.39 -0.02 1.70 16 36 H 0.07 1.80 7.24 -2.39 -0.02 1.78 16 37 H 0.07 1.33 7.17 -2.39 -0.02 1.31 16 38 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.05 1.29 7.09 -2.38 -0.02 1.27 16 40 H 0.02 0.73 7.16 -2.39 -0.02 0.71 16 41 H 0.05 1.86 7.88 -2.39 -0.02 1.84 16 42 H 0.25 14.38 8.31 -92.71 -0.77 13.60 16 43 H 0.04 2.09 6.49 -2.39 -0.02 2.07 16 44 H -0.01 -0.46 7.10 -2.39 -0.02 -0.47 16 45 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.07 1.81 7.16 -2.39 -0.02 1.80 16 47 H 0.05 1.71 7.10 -2.39 -0.02 1.69 16 48 H 0.07 2.45 7.62 -2.39 -0.02 2.43 16 49 H 0.06 2.07 7.15 -2.39 -0.02 2.05 16 50 H 0.20 1.29 7.26 -2.91 -0.02 1.26 16 51 H 0.17 1.40 8.06 -2.91 -0.02 1.38 16 52 H 0.20 2.20 8.06 -2.91 -0.02 2.17 16 Total: -1.00 -72.13 399.91 4.29 -67.84 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 0.91 Total: 15.95 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: 8.05 Total: 10.88 kcal Atomic # 7 Polarization: -116.88 SS G_CDS: -6.65 Total: -123.53 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: -0.04 Total: -17.94 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -72.13 4.29 -67.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982702678.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.300 kcal (2) G-P(sol) polarization free energy of solvation -72.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds