Wall clock time and date at job start Wed Apr 1 2020 05:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.47489 * 2 1 4 4 N 1.46502 * 109.46906 * 239.99556 * 2 1 3 5 5 C 1.34776 * 119.99423 * 85.00672 * 4 2 1 6 6 O 1.21624 * 120.00616 * 4.81930 * 5 4 2 7 7 C 1.47171 * 119.99502 * 184.81858 * 5 4 2 8 8 C 1.38397 * 126.88280 * 354.61921 * 7 5 4 9 9 C 1.39684 * 105.35526 * 179.91324 * 8 7 5 10 10 N 1.30856 * 107.86098 * 0.35607 * 9 8 7 11 11 N 1.28448 * 110.92827 * 359.77096 * 10 9 8 12 12 C 1.46502 * 125.19032 * 179.97438 * 11 10 9 13 13 C 1.53784 * 113.61335 * 43.09745 * 12 11 10 14 14 C 1.53953 * 87.01850 * 220.04921 * 13 12 11 15 15 C 1.53779 * 87.11248 * 25.36410 * 14 13 12 16 16 C 1.53003 * 109.46609 * 120.00450 * 2 1 3 17 17 H 1.08998 * 109.51989 * 180.08123 * 16 2 1 18 18 C 1.53045 * 109.49665 * 300.15505 * 16 2 1 19 19 C 1.53345 * 109.60830 * 181.32822 * 18 16 2 20 20 C 1.53193 * 109.15159 * 298.71511 * 19 18 16 21 21 N 1.46920 * 108.89247 * 54.57493 * 20 19 18 22 22 C 1.36940 * 120.63116 * 126.34229 * 21 20 19 23 23 H 1.07995 * 120.00204 * 211.61104 * 22 21 20 24 24 C 1.38814 * 119.99638 * 31.61877 * 22 21 20 25 25 N 1.31618 * 120.00092 * 10.40691 * 24 22 21 26 26 Si 1.86801 * 119.99752 * 190.41511 * 24 22 21 27 27 H 1.48495 * 109.47308 * 359.97438 * 26 24 22 28 28 H 1.48505 * 109.47204 * 119.99931 * 26 24 22 29 29 H 1.48499 * 109.47123 * 239.99516 * 26 24 22 30 30 C 1.46928 * 118.74036 * 306.32392 * 21 20 19 31 31 H 1.08998 * 109.46980 * 300.00466 * 1 2 3 32 32 H 1.09005 * 109.46616 * 59.99903 * 1 2 3 33 33 H 1.08995 * 109.47489 * 180.02562 * 1 2 3 34 34 H 0.97004 * 120.00248 * 265.00181 * 4 2 1 35 35 H 1.08000 * 127.32495 * 359.97438 * 8 7 5 36 36 H 1.07997 * 126.06591 * 180.14483 * 9 8 7 37 37 H 1.08996 * 112.84999 * 174.29559 * 12 11 10 38 38 H 1.09001 * 113.61487 * 334.57059 * 13 12 11 39 39 H 1.09003 * 113.61650 * 105.47224 * 13 12 11 40 40 H 1.09002 * 113.53556 * 270.80689 * 14 13 12 41 41 H 1.09003 * 113.74526 * 139.95065 * 14 13 12 42 42 H 1.09003 * 113.61336 * 220.08935 * 15 14 13 43 43 H 1.08994 * 113.68876 * 89.20049 * 15 14 13 44 44 H 1.09001 * 109.45897 * 301.34278 * 18 16 2 45 45 H 1.09005 * 109.45784 * 61.30970 * 18 16 2 46 46 H 1.08997 * 109.68667 * 178.74612 * 19 18 16 47 47 H 1.09004 * 109.47288 * 58.55433 * 19 18 16 48 48 H 1.09003 * 109.58098 * 294.71980 * 20 19 18 49 49 H 1.08994 * 109.58578 * 174.43691 * 20 19 18 50 50 H 0.97002 * 119.99869 * 179.97438 * 25 24 22 51 51 H 1.09001 * 109.58741 * 173.39475 * 30 21 20 52 52 H 1.09003 * 109.58395 * 293.67317 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.9423 1.1801 -2.3918 7 6 2.5356 -0.7343 -3.5828 8 6 2.9012 -2.0650 -3.6870 9 6 3.1744 -2.2686 -5.0416 10 7 2.9861 -1.1331 -5.6641 11 7 2.6132 -0.2170 -4.8446 12 6 2.3170 1.1711 -5.2078 13 6 1.4909 1.3075 -6.4977 14 6 2.3848 2.5110 -6.8475 15 6 3.4631 1.8694 -5.9585 16 6 2.0399 -0.7214 1.2492 17 1 3.1299 -0.7206 1.2509 18 6 1.5268 -0.0027 2.4993 19 6 2.0636 -0.7041 3.7529 20 6 1.5531 -2.1482 3.7782 21 7 1.9178 -2.8039 2.5151 22 6 2.6062 -3.9877 2.5168 23 1 3.2941 -4.2136 1.7155 24 6 2.4197 -4.8975 3.5486 25 7 1.4410 -4.7228 4.4111 26 14 3.5579 -6.3695 3.7129 27 1 4.5688 -6.3374 2.6256 28 1 4.2440 -6.3203 5.0290 29 1 2.7653 -7.6215 3.6144 30 6 1.5295 -2.1657 1.2499 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 2.2490 -1.6319 -1.1526 35 1 2.9614 -2.7919 -2.8904 36 1 3.4890 -3.1973 -5.4942 37 1 1.9234 1.7520 -4.3738 38 1 1.6052 0.4655 -7.1805 39 1 0.4483 1.5731 -6.3225 40 1 2.0088 3.4590 -6.4627 41 1 2.6606 2.5615 -7.9009 42 1 4.0106 2.5881 -5.3486 43 1 4.1185 1.1814 -6.4924 44 1 1.8683 1.0324 2.4889 45 1 0.4371 -0.0255 2.5096 46 1 1.7171 -0.1800 4.6436 47 1 3.1534 -0.7037 3.7309 48 1 0.4690 -2.1505 3.8914 49 1 2.0087 -2.6822 4.6120 50 1 1.3105 -5.3588 5.1318 51 1 1.9717 -2.7098 0.4153 52 1 0.4436 -2.1719 1.1557 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025423775.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:52 Heat of formation + Delta-G solvation = 75.973338 kcal Electronic energy + Delta-G solvation = -31258.481028 eV Core-core repulsion = 27260.647361 eV Total energy + Delta-G solvation = -3997.833667 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.70481 -39.78747 -38.73164 -37.98584 -35.27186 -33.18819 -31.95196 -31.65866 -30.47536 -30.19173 -28.13025 -26.07764 -25.78644 -25.32377 -24.46660 -22.94128 -22.19534 -21.87876 -20.61737 -20.15711 -19.46385 -18.69576 -18.09187 -16.75726 -16.41896 -16.07010 -15.83390 -15.67804 -14.95610 -14.86197 -14.55183 -14.29270 -14.17708 -13.87843 -13.56551 -13.48255 -13.09735 -13.01101 -12.88800 -12.63641 -12.53721 -12.41237 -12.28377 -11.85276 -11.64473 -11.56007 -11.12568 -10.99767 -10.97036 -10.96325 -10.78935 -10.62419 -10.50512 -10.18731 -10.17659 -9.96953 -9.90372 -9.63631 -9.42224 -9.33773 -9.11833 -8.95266 -8.50753 -6.63712 -5.81440 -3.30211 1.16331 2.24055 2.50943 3.14683 3.20327 3.33954 3.41917 3.43354 4.02045 4.16740 4.42078 4.43788 4.48030 4.52470 4.69524 4.96571 5.02374 5.18157 5.24441 5.33174 5.37005 5.37921 5.38821 5.46595 5.52097 5.54512 5.55207 5.59870 5.64090 5.66942 5.69307 5.81109 5.96280 6.01074 6.08157 6.19021 6.20674 6.29958 6.39941 6.44829 6.54938 6.57909 6.64941 6.68681 6.75037 6.85001 6.95297 7.39527 7.44588 7.68722 7.75972 7.96088 8.10317 8.44503 9.19089 9.80457 10.38634 11.26166 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015229 B = 0.002599 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.173634 B =10769.389334 C =12177.181664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.151 3.849 3 H 0.085 0.915 4 N -0.702 5.702 5 C 0.592 3.408 6 O -0.550 6.550 7 C -0.038 4.038 8 C -0.187 4.187 9 C -0.005 4.005 10 N -0.278 5.278 11 N -0.246 5.246 12 C 0.110 3.890 13 C -0.141 4.141 14 C -0.136 4.136 15 C -0.141 4.141 16 C -0.113 4.113 17 H 0.073 0.927 18 C -0.100 4.100 19 C -0.143 4.143 20 C 0.170 3.830 21 N -0.591 5.591 22 C -0.253 4.253 23 H 0.064 0.936 24 C 0.005 3.995 25 N -0.903 5.903 26 Si 0.903 3.097 27 H -0.277 1.277 28 H -0.289 1.289 29 H -0.290 1.290 30 C 0.151 3.849 31 H 0.070 0.930 32 H 0.051 0.949 33 H 0.066 0.934 34 H 0.406 0.594 35 H 0.162 0.838 36 H 0.186 0.814 37 H 0.153 0.847 38 H 0.097 0.903 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.094 0.906 44 H 0.046 0.954 45 H 0.060 0.940 46 H 0.049 0.951 47 H 0.053 0.947 48 H 0.017 0.983 49 H 0.087 0.913 50 H 0.253 0.747 51 H 0.046 0.954 52 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.595 11.999 -17.410 21.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.046 3.954 3 H 0.103 0.897 4 N -0.353 5.353 5 C 0.378 3.622 6 O -0.429 6.429 7 C -0.167 4.167 8 C -0.216 4.216 9 C -0.180 4.180 10 N -0.110 5.110 11 N -0.033 5.033 12 C 0.010 3.990 13 C -0.179 4.179 14 C -0.174 4.174 15 C -0.179 4.179 16 C -0.134 4.134 17 H 0.091 0.909 18 C -0.139 4.139 19 C -0.182 4.182 20 C 0.044 3.956 21 N -0.313 5.313 22 C -0.383 4.383 23 H 0.081 0.919 24 C -0.194 4.194 25 N -0.547 5.547 26 Si 0.733 3.267 27 H -0.202 1.202 28 H -0.216 1.216 29 H -0.216 1.216 30 C 0.025 3.975 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.243 0.757 35 H 0.180 0.820 36 H 0.203 0.797 37 H 0.171 0.829 38 H 0.116 0.884 39 H 0.096 0.904 40 H 0.106 0.894 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.112 0.888 44 H 0.065 0.935 45 H 0.079 0.921 46 H 0.068 0.932 47 H 0.072 0.928 48 H 0.035 0.965 49 H 0.105 0.895 50 H 0.064 0.936 51 H 0.065 0.935 52 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 0.402 13.357 -18.352 22.702 hybrid contribution 0.667 -1.808 1.028 2.184 sum 1.069 11.548 -17.325 20.848 Atomic orbital electron populations 1.22274 0.95192 1.02908 1.01968 1.21108 0.94214 0.96885 0.83146 0.89685 1.45925 1.65780 1.14653 1.08906 1.16918 0.76958 0.86065 0.82273 1.90700 1.52404 1.14129 1.85660 1.21491 1.12196 0.94788 0.88204 1.22358 1.06298 0.94415 0.98539 1.23565 1.05634 0.96698 0.92149 1.73060 1.17214 0.98179 1.22588 1.45774 1.44994 1.09465 1.03077 1.23861 0.99060 0.76461 0.99653 1.23377 0.99126 0.99534 0.95876 1.22715 0.96516 0.97563 1.00613 1.23339 0.96703 0.99664 0.98204 1.21959 1.00849 0.98232 0.92345 0.90886 1.21484 1.00310 0.97444 0.94612 1.22250 1.00483 0.99874 0.95639 1.20798 0.96610 0.87892 0.90270 1.43973 1.65227 1.22714 0.99370 1.19186 1.16715 0.93359 1.09063 0.91857 1.25169 0.97100 0.97538 0.99586 1.69986 1.30145 1.37024 1.17560 0.86213 0.80199 0.82636 0.77655 1.20216 1.21596 1.21643 1.20974 0.96548 0.89844 0.90172 0.91092 0.92992 0.91481 0.75680 0.82027 0.79702 0.82942 0.88435 0.90421 0.89417 0.90230 0.90326 0.88794 0.93543 0.92139 0.93194 0.92848 0.96465 0.89490 0.93642 0.93520 0.95707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 8.79 37.16 0.33 -1.87 16 2 C 0.15 2.09 2.45 -67.93 -0.17 1.93 16 3 H 0.09 1.24 7.51 -51.93 -0.39 0.85 16 4 N -0.70 -9.32 4.99 -54.96 -0.27 -9.59 16 5 C 0.59 8.39 7.76 -12.63 -0.10 8.29 16 6 O -0.55 -8.77 14.12 5.26 0.07 -8.69 16 7 C -0.04 -0.51 6.96 -82.06 -0.57 -1.08 16 8 C -0.19 -2.16 10.50 -38.98 -0.41 -2.57 16 9 C 0.00 -0.05 12.03 -17.43 -0.21 -0.26 16 10 N -0.28 -3.47 11.14 30.59 0.34 -3.13 16 11 N -0.25 -3.12 3.46 -49.91 -0.17 -3.30 16 12 C 0.11 1.20 4.42 -67.12 -0.30 0.90 16 13 C -0.14 -1.23 7.76 -25.83 -0.20 -1.43 16 14 C -0.14 -0.96 8.09 -25.83 -0.21 -1.17 16 15 C -0.14 -1.26 7.80 -25.92 -0.20 -1.46 16 16 C -0.11 -1.80 2.33 -90.50 -0.21 -2.01 16 17 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 18 C -0.10 -1.59 4.77 -26.53 -0.13 -1.71 16 19 C -0.14 -2.63 6.11 -26.45 -0.16 -2.79 16 20 C 0.17 3.91 5.24 -3.71 -0.02 3.89 16 21 N -0.59 -14.00 2.99 -172.33 -0.51 -14.51 16 22 C -0.25 -6.65 9.58 -15.06 -0.14 -6.79 16 23 H 0.06 1.62 7.85 -52.49 -0.41 1.21 16 24 C 0.00 0.13 5.05 -17.43 -0.09 0.04 16 25 N -0.90 -25.51 11.05 55.49 0.61 -24.90 16 26 Si 0.90 21.12 29.57 -169.99 -5.03 16.10 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 29 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 30 C 0.15 2.87 5.29 -3.71 -0.02 2.85 16 31 H 0.07 0.89 6.46 -51.93 -0.34 0.56 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.93 6.32 -51.93 -0.33 0.60 16 34 H 0.41 5.05 6.00 -40.82 -0.24 4.81 16 35 H 0.16 1.56 7.59 -52.49 -0.40 1.16 16 36 H 0.19 1.46 8.06 -52.49 -0.42 1.03 16 37 H 0.15 1.83 5.68 -51.93 -0.29 1.54 16 38 H 0.10 0.92 7.75 -51.93 -0.40 0.52 16 39 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.09 0.90 8.03 -51.93 -0.42 0.49 16 44 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.06 0.94 6.50 -51.93 -0.34 0.60 16 46 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 48 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.09 2.27 6.11 -51.93 -0.32 1.95 16 50 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 51 H 0.05 0.84 6.52 -51.93 -0.34 0.50 16 52 H 0.03 0.49 6.19 -51.93 -0.32 0.17 16 LS Contribution 399.86 15.07 6.03 6.03 Total: -1.00 -30.48 399.86 -10.06 -40.54 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -8.32 Total: 6.71 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: -2.81 Total: -5.25 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: -0.01 Total: -55.43 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.07 Total: -8.69 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.10 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -30.48 -10.06 -40.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025423775.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.514 kcal (2) G-P(sol) polarization free energy of solvation -30.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds