Wall clock time and date at job start Wed Apr 1 2020 05:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.47489 * 2 1 4 4 N 1.46502 * 109.46906 * 239.99556 * 2 1 3 5 5 C 1.34776 * 119.99423 * 85.00672 * 4 2 1 6 6 O 1.21624 * 120.00616 * 4.81930 * 5 4 2 7 7 C 1.47171 * 119.99502 * 184.81858 * 5 4 2 8 8 C 1.38397 * 126.88280 * 354.61921 * 7 5 4 9 9 C 1.39684 * 105.35526 * 179.91324 * 8 7 5 10 10 N 1.30856 * 107.86098 * 0.35607 * 9 8 7 11 11 N 1.28448 * 110.92827 * 359.77096 * 10 9 8 12 12 C 1.46502 * 125.19032 * 179.97438 * 11 10 9 13 13 C 1.53784 * 113.61335 * 43.09745 * 12 11 10 14 14 C 1.53953 * 87.01850 * 220.04921 * 13 12 11 15 15 C 1.53779 * 87.11248 * 25.36410 * 14 13 12 16 16 C 1.53003 * 109.46609 * 120.00450 * 2 1 3 17 17 H 1.08998 * 109.51989 * 180.08123 * 16 2 1 18 18 C 1.53045 * 109.49665 * 300.15505 * 16 2 1 19 19 C 1.53345 * 109.60830 * 181.32822 * 18 16 2 20 20 C 1.53193 * 109.15159 * 298.71511 * 19 18 16 21 21 N 1.46920 * 108.89247 * 54.57493 * 20 19 18 22 22 C 1.36940 * 120.63116 * 126.34229 * 21 20 19 23 23 H 1.07995 * 120.00204 * 211.61104 * 22 21 20 24 24 C 1.38814 * 119.99638 * 31.61877 * 22 21 20 25 25 N 1.31618 * 120.00092 * 10.40691 * 24 22 21 26 26 Si 1.86801 * 119.99752 * 190.41511 * 24 22 21 27 27 H 1.48495 * 109.47308 * 359.97438 * 26 24 22 28 28 H 1.48505 * 109.47204 * 119.99931 * 26 24 22 29 29 H 1.48499 * 109.47123 * 239.99516 * 26 24 22 30 30 C 1.46928 * 118.74036 * 306.32392 * 21 20 19 31 31 H 1.08998 * 109.46980 * 300.00466 * 1 2 3 32 32 H 1.09005 * 109.46616 * 59.99903 * 1 2 3 33 33 H 1.08995 * 109.47489 * 180.02562 * 1 2 3 34 34 H 0.97004 * 120.00248 * 265.00181 * 4 2 1 35 35 H 1.08000 * 127.32495 * 359.97438 * 8 7 5 36 36 H 1.07997 * 126.06591 * 180.14483 * 9 8 7 37 37 H 1.08996 * 112.84999 * 174.29559 * 12 11 10 38 38 H 1.09001 * 113.61487 * 334.57059 * 13 12 11 39 39 H 1.09003 * 113.61650 * 105.47224 * 13 12 11 40 40 H 1.09002 * 113.53556 * 270.80689 * 14 13 12 41 41 H 1.09003 * 113.74526 * 139.95065 * 14 13 12 42 42 H 1.09003 * 113.61336 * 220.08935 * 15 14 13 43 43 H 1.08994 * 113.68876 * 89.20049 * 15 14 13 44 44 H 1.09001 * 109.45897 * 301.34278 * 18 16 2 45 45 H 1.09005 * 109.45784 * 61.30970 * 18 16 2 46 46 H 1.08997 * 109.68667 * 178.74612 * 19 18 16 47 47 H 1.09004 * 109.47288 * 58.55433 * 19 18 16 48 48 H 1.09003 * 109.58098 * 294.71980 * 20 19 18 49 49 H 1.08994 * 109.58578 * 174.43691 * 20 19 18 50 50 H 0.97002 * 119.99869 * 179.97438 * 25 24 22 51 51 H 1.09001 * 109.58741 * 173.39475 * 30 21 20 52 52 H 1.09003 * 109.58395 * 293.67317 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.9423 1.1801 -2.3918 7 6 2.5356 -0.7343 -3.5828 8 6 2.9012 -2.0650 -3.6870 9 6 3.1744 -2.2686 -5.0416 10 7 2.9861 -1.1331 -5.6641 11 7 2.6132 -0.2170 -4.8446 12 6 2.3170 1.1711 -5.2078 13 6 1.4909 1.3075 -6.4977 14 6 2.3848 2.5110 -6.8475 15 6 3.4631 1.8694 -5.9585 16 6 2.0399 -0.7214 1.2492 17 1 3.1299 -0.7206 1.2509 18 6 1.5268 -0.0027 2.4993 19 6 2.0636 -0.7041 3.7529 20 6 1.5531 -2.1482 3.7782 21 7 1.9178 -2.8039 2.5151 22 6 2.6062 -3.9877 2.5168 23 1 3.2941 -4.2136 1.7155 24 6 2.4197 -4.8975 3.5486 25 7 1.4410 -4.7228 4.4111 26 14 3.5579 -6.3695 3.7129 27 1 4.5688 -6.3374 2.6256 28 1 4.2440 -6.3203 5.0290 29 1 2.7653 -7.6215 3.6144 30 6 1.5295 -2.1657 1.2499 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 2.2490 -1.6319 -1.1526 35 1 2.9614 -2.7919 -2.8904 36 1 3.4890 -3.1973 -5.4942 37 1 1.9234 1.7520 -4.3738 38 1 1.6052 0.4655 -7.1805 39 1 0.4483 1.5731 -6.3225 40 1 2.0088 3.4590 -6.4627 41 1 2.6606 2.5615 -7.9009 42 1 4.0106 2.5881 -5.3486 43 1 4.1185 1.1814 -6.4924 44 1 1.8683 1.0324 2.4889 45 1 0.4371 -0.0255 2.5096 46 1 1.7171 -0.1800 4.6436 47 1 3.1534 -0.7037 3.7309 48 1 0.4690 -2.1505 3.8914 49 1 2.0087 -2.6822 4.6120 50 1 1.3105 -5.3588 5.1318 51 1 1.9717 -2.7098 0.4153 52 1 0.4436 -2.1719 1.1557 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025423775.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:51 Heat of formation + Delta-G solvation = 59.218432 kcal Electronic energy + Delta-G solvation = -31259.207575 eV Core-core repulsion = 27260.647361 eV Total energy + Delta-G solvation = -3998.560214 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.60271 -40.95971 -39.45226 -39.38374 -36.71023 -34.75215 -33.07528 -32.69526 -32.23906 -31.33134 -29.45861 -27.18819 -26.76785 -26.56642 -25.62625 -24.18729 -23.72857 -22.85684 -21.89462 -21.22629 -20.46001 -19.90401 -19.14710 -18.54939 -17.49305 -17.03287 -16.84745 -16.76951 -16.46758 -16.05704 -15.76806 -15.60450 -15.33406 -15.07657 -15.00505 -14.65818 -14.40831 -14.07040 -13.99526 -13.83429 -13.65148 -13.60591 -13.29823 -13.26986 -13.00127 -12.79303 -12.68672 -12.26122 -12.21916 -12.04365 -11.93830 -11.90051 -11.73984 -11.64667 -11.60855 -11.47203 -11.22833 -11.05910 -10.95302 -10.51786 -10.36808 -10.03821 -9.96285 -8.56532 -7.82886 -5.33879 0.18413 1.34835 1.47583 1.49955 1.59327 1.62917 2.12022 2.17210 2.52522 3.30266 3.33003 3.46173 3.47896 3.63098 3.72099 3.75368 3.93558 3.95040 4.00271 4.07384 4.13361 4.36961 4.41220 4.48133 4.49781 4.59891 4.66595 4.67666 4.71580 4.73435 4.82884 4.86201 4.86514 4.90795 4.94549 4.97611 4.98255 5.05945 5.16385 5.21874 5.31359 5.32134 5.37709 5.44401 5.51225 5.59115 5.61992 5.71202 5.77621 5.84608 6.36649 6.45515 6.98595 7.09680 7.20003 7.90218 8.42763 9.22420 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015229 B = 0.002599 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.173634 B =10769.389334 C =12177.181664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.161 3.839 3 H 0.086 0.914 4 N -0.698 5.698 5 C 0.594 3.406 6 O -0.571 6.571 7 C -0.064 4.064 8 C -0.184 4.184 9 C -0.008 4.008 10 N -0.289 5.289 11 N -0.251 5.251 12 C 0.093 3.907 13 C -0.137 4.137 14 C -0.121 4.121 15 C -0.138 4.138 16 C -0.097 4.097 17 H 0.065 0.935 18 C -0.097 4.097 19 C -0.132 4.132 20 C 0.175 3.825 21 N -0.609 5.609 22 C -0.257 4.257 23 H 0.068 0.932 24 C -0.050 4.050 25 N -0.936 5.936 26 Si 0.964 3.036 27 H -0.264 1.264 28 H -0.294 1.294 29 H -0.293 1.293 30 C 0.151 3.849 31 H 0.080 0.920 32 H 0.051 0.949 33 H 0.059 0.941 34 H 0.411 0.589 35 H 0.179 0.821 36 H 0.216 0.784 37 H 0.139 0.861 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.100 0.900 41 H 0.094 0.906 42 H 0.080 0.920 43 H 0.086 0.914 44 H 0.075 0.925 45 H 0.066 0.934 46 H 0.068 0.932 47 H 0.047 0.953 48 H -0.004 1.004 49 H 0.050 0.950 50 H 0.248 0.752 51 H 0.054 0.946 52 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.204 12.894 -19.077 23.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.056 3.944 3 H 0.104 0.896 4 N -0.349 5.349 5 C 0.380 3.620 6 O -0.451 6.451 7 C -0.192 4.192 8 C -0.213 4.213 9 C -0.183 4.183 10 N -0.122 5.122 11 N -0.039 5.039 12 C -0.007 4.007 13 C -0.175 4.175 14 C -0.159 4.159 15 C -0.177 4.177 16 C -0.118 4.118 17 H 0.084 0.916 18 C -0.135 4.135 19 C -0.171 4.171 20 C 0.049 3.951 21 N -0.332 5.332 22 C -0.387 4.387 23 H 0.086 0.914 24 C -0.246 4.246 25 N -0.582 5.582 26 Si 0.793 3.207 27 H -0.188 1.188 28 H -0.221 1.221 29 H -0.221 1.221 30 C 0.025 3.975 31 H 0.099 0.901 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.248 0.752 35 H 0.196 0.804 36 H 0.232 0.768 37 H 0.157 0.843 38 H 0.108 0.892 39 H 0.101 0.899 40 H 0.119 0.881 41 H 0.113 0.887 42 H 0.098 0.902 43 H 0.105 0.895 44 H 0.093 0.907 45 H 0.084 0.916 46 H 0.087 0.913 47 H 0.066 0.934 48 H 0.014 0.986 49 H 0.068 0.932 50 H 0.057 0.943 51 H 0.072 0.928 52 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 1.019 14.268 -20.050 24.629 hybrid contribution 0.465 -2.090 1.513 2.622 sum 1.484 12.178 -18.536 22.229 Atomic orbital electron populations 1.22223 0.94526 1.02556 1.02473 1.20947 0.94548 0.96517 0.82348 0.89554 1.45853 1.65619 1.14775 1.08609 1.17031 0.76498 0.85817 0.82629 1.90687 1.53427 1.15021 1.86013 1.21548 1.13761 0.95615 0.88241 1.22655 1.05270 0.94025 0.99347 1.24129 1.04815 0.97321 0.92019 1.73057 1.17516 0.98684 1.22946 1.45987 1.44950 1.10014 1.02910 1.24051 1.00681 0.75942 0.99989 1.23351 0.99527 1.00092 0.94519 1.22707 0.94747 0.97243 1.01161 1.23319 0.96594 0.99470 0.98293 1.21735 1.00214 0.96252 0.93609 0.91630 1.21477 1.00616 0.98530 0.92888 1.22083 0.99994 0.97011 0.98061 1.20605 0.95032 0.90340 0.89132 1.44229 1.65347 1.22595 1.01043 1.19532 1.16498 0.93990 1.08722 0.91413 1.25886 0.98630 1.00239 0.99807 1.70149 1.31957 1.37897 1.18204 0.85246 0.78580 0.79383 0.77496 1.18799 1.22114 1.22062 1.21101 0.96513 0.91511 0.88352 0.90116 0.92975 0.92200 0.75185 0.80377 0.76780 0.84339 0.89154 0.89876 0.88115 0.88726 0.90179 0.89543 0.90671 0.91581 0.91312 0.93409 0.98606 0.93202 0.94281 0.92799 0.95906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.96 8.79 71.98 0.63 -3.33 16 2 C 0.16 4.18 2.45 44.99 0.11 4.29 16 3 H 0.09 2.31 7.51 -2.39 -0.02 2.29 16 4 N -0.70 -17.61 4.99 -446.04 -2.22 -19.83 16 5 C 0.59 16.32 7.76 86.59 0.67 16.99 16 6 O -0.57 -17.85 14.12 -4.11 -0.06 -17.91 16 7 C -0.06 -1.63 6.96 40.79 0.28 -1.35 16 8 C -0.18 -3.98 10.50 22.66 0.24 -3.74 16 9 C -0.01 -0.16 12.03 85.19 1.02 0.86 16 10 N -0.29 -6.90 11.14 -57.14 -0.64 -7.54 16 11 N -0.25 -6.22 3.46 -311.81 -1.08 -7.30 16 12 C 0.09 1.98 4.42 45.52 0.20 2.19 16 13 C -0.14 -2.24 7.76 31.18 0.24 -2.00 16 14 C -0.12 -1.48 8.09 31.18 0.25 -1.23 16 15 C -0.14 -2.35 7.80 31.12 0.24 -2.11 16 16 C -0.10 -2.93 2.33 -10.72 -0.03 -2.95 16 17 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 18 C -0.10 -2.85 4.77 30.72 0.15 -2.70 16 19 C -0.13 -4.71 6.11 30.77 0.19 -4.53 16 20 C 0.17 8.16 5.24 86.36 0.45 8.61 16 21 N -0.61 -28.95 2.99 -699.12 -2.09 -31.04 16 22 C -0.26 -13.51 9.58 84.03 0.81 -12.71 16 23 H 0.07 3.43 7.85 -2.91 -0.02 3.41 16 24 C -0.05 -2.74 5.05 84.86 0.43 -2.31 16 25 N -0.94 -54.35 11.05 21.65 0.24 -54.11 16 26 Si 0.96 43.85 29.57 68.60 2.03 45.87 16 27 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 28 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 29 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 30 C 0.15 5.58 5.29 86.36 0.46 6.04 16 31 H 0.08 1.84 6.46 -2.39 -0.02 1.83 16 32 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 33 H 0.06 1.57 6.32 -2.39 -0.02 1.56 16 34 H 0.41 9.63 6.00 -92.71 -0.56 9.08 16 35 H 0.18 3.09 7.59 -2.91 -0.02 3.06 16 36 H 0.22 2.81 8.06 -2.91 -0.02 2.79 16 37 H 0.14 3.33 5.68 -2.39 -0.01 3.32 16 38 H 0.09 1.62 7.75 -2.39 -0.02 1.60 16 39 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.09 1.60 8.03 -2.39 -0.02 1.58 16 44 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.07 1.89 6.50 -2.38 -0.02 1.88 16 46 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 47 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 48 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 49 H 0.05 2.69 6.11 -2.39 -0.01 2.67 16 50 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 51 H 0.05 1.89 6.52 -2.39 -0.02 1.87 16 52 H 0.02 0.88 6.19 -2.39 -0.01 0.86 16 Total: -1.00 -66.53 399.86 2.91 -63.62 By element: Atomic # 1 Polarization: 27.84 SS G_CDS: 0.37 Total: 28.21 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: 6.35 Total: 0.03 kcal Atomic # 7 Polarization: -114.03 SS G_CDS: -5.79 Total: -119.82 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -0.06 Total: -17.91 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Total: -66.53 2.91 -63.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025423775.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.840 kcal (2) G-P(sol) polarization free energy of solvation -66.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds