Wall clock time and date at job start Wed Apr 1 2020 05:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47563 * 2 1 4 4 N 1.46496 * 109.47223 * 240.00071 * 2 1 3 5 5 C 1.34774 * 120.00220 * 84.99877 * 4 2 1 6 6 O 1.21633 * 120.00006 * 354.99413 * 5 4 2 7 7 C 1.47159 * 120.00437 * 174.99186 * 5 4 2 8 8 C 1.38408 * 126.88528 * 4.89397 * 7 5 4 9 9 C 1.39675 * 105.36319 * 180.02562 * 8 7 5 10 10 N 1.30864 * 107.85797 * 359.97438 * 9 8 7 11 11 N 1.28440 * 110.93171 * 359.72360 * 10 9 8 12 12 C 1.46497 * 125.19329 * 180.27866 * 11 10 9 13 13 C 1.53779 * 113.61733 * 40.36937 * 12 11 10 14 14 C 1.53779 * 87.08505 * 220.02120 * 13 12 11 15 15 C 1.53779 * 87.07839 * 25.43190 * 14 13 12 16 16 C 1.53004 * 109.47056 * 120.00443 * 2 1 3 17 17 H 1.08994 * 109.49740 * 59.92822 * 16 2 1 18 18 C 1.53043 * 109.51966 * 299.85068 * 16 2 1 19 19 C 1.53045 * 109.53463 * 178.66681 * 18 16 2 20 20 C 1.52757 * 109.38367 * 61.24364 * 19 18 16 21 21 N 1.46926 * 109.00661 * 305.58334 * 20 19 18 22 22 C 1.36932 * 120.63685 * 233.58527 * 21 20 19 23 23 H 1.07995 * 120.00625 * 147.01323 * 22 21 20 24 24 C 1.38817 * 119.99377 * 327.01323 * 22 21 20 25 25 N 1.31615 * 120.00318 * 336.02173 * 24 22 21 26 26 Si 1.86806 * 119.99877 * 155.75197 * 24 22 21 27 27 H 1.48503 * 109.46796 * 59.99598 * 26 24 22 28 28 H 1.48494 * 109.47076 * 179.97438 * 26 24 22 29 29 H 1.48504 * 109.46748 * 299.99926 * 26 24 22 30 30 C 1.46936 * 118.73569 * 53.31276 * 21 20 19 31 31 H 1.09001 * 109.47379 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47077 * 300.00154 * 1 2 3 33 33 H 1.09005 * 109.46956 * 59.99281 * 1 2 3 34 34 H 0.97001 * 120.00076 * 265.00343 * 4 2 1 35 35 H 1.07998 * 127.31622 * 0.02562 * 8 7 5 36 36 H 1.07997 * 126.06877 * 180.02562 * 9 8 7 37 37 H 1.09005 * 112.85164 * 171.68118 * 12 11 10 38 38 H 1.09000 * 113.61456 * 334.57625 * 13 12 11 39 39 H 1.09002 * 113.61126 * 105.46805 * 13 12 11 40 40 H 1.08995 * 113.61296 * 270.88650 * 14 13 12 41 41 H 1.08992 * 113.69125 * 139.99276 * 14 13 12 42 42 H 1.08998 * 113.61734 * 220.01747 * 15 14 13 43 43 H 1.09002 * 113.69217 * 89.12829 * 15 14 13 44 44 H 1.08998 * 109.46155 * 298.68782 * 18 16 2 45 45 H 1.09009 * 109.46069 * 58.64999 * 18 16 2 46 46 H 1.09003 * 109.49300 * 181.31730 * 19 18 16 47 47 H 1.09001 * 109.49555 * 301.38097 * 19 18 16 48 48 H 1.08997 * 109.51000 * 185.70597 * 20 19 18 49 49 H 1.08997 * 109.43442 * 65.42249 * 20 19 18 50 50 H 0.97007 * 120.00088 * 353.90333 * 25 24 22 51 51 H 1.08998 * 109.58485 * 66.43190 * 30 21 20 52 52 H 1.09005 * 109.58289 * 186.85235 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.7728 1.1364 -2.4360 7 6 2.7405 -0.6810 -3.5294 8 6 3.1251 -2.0069 -3.6280 9 6 3.6266 -2.1514 -4.9235 10 7 3.5342 -0.9909 -5.5213 11 7 3.0167 -0.1124 -4.7404 12 6 2.7651 1.2871 -5.0929 13 6 2.2262 1.4755 -6.5208 14 6 3.1378 2.7101 -6.6178 15 6 4.0234 2.0423 -5.5526 16 6 2.0400 -0.7214 1.2492 17 1 1.6759 -1.7487 1.2502 18 6 1.5335 0.0013 2.4996 19 6 2.0158 -0.7391 3.7492 20 6 3.5431 -0.7433 3.7781 21 7 4.0441 -1.3014 2.5147 22 6 4.9299 -2.3457 2.5158 23 1 4.9013 -3.0789 1.7234 24 6 5.8646 -2.4618 3.5355 25 7 6.2343 -1.3962 4.2139 26 14 6.5922 -4.1317 3.9499 27 1 7.2914 -4.6763 2.7584 28 1 7.5592 -3.9867 5.0675 29 1 5.5047 -5.0592 4.3527 30 6 3.5718 -0.7217 1.2498 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5140 -0.8900 34 1 2.2490 -1.6317 -1.1526 35 1 3.0526 -2.7680 -2.8652 36 1 4.0200 -3.0597 -5.3554 37 1 2.1901 1.8180 -4.3342 38 1 2.5053 0.6720 -7.2024 39 1 1.1632 1.7135 -6.5584 40 1 2.6639 3.6306 -6.2770 41 1 3.6263 2.8189 -7.5860 42 1 4.4114 2.7380 -4.8086 43 1 4.7946 1.3936 -5.9681 44 1 1.9182 1.0211 2.5105 45 1 0.4437 0.0245 2.4893 46 1 1.6353 -0.2372 4.6389 47 1 1.6515 -1.7661 3.7269 48 1 3.8898 -1.3553 4.6108 49 1 3.9065 0.2775 3.8962 50 1 5.9222 -0.5179 3.9453 51 1 3.9376 0.3009 1.1575 52 1 3.9375 -1.3195 0.4149 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025423777.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:21 Heat of formation + Delta-G solvation = 69.631507 kcal Electronic energy + Delta-G solvation = -31389.514571 eV Core-core repulsion = 27391.405902 eV Total energy + Delta-G solvation = -3998.108669 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 3.61 seconds Orbital eigenvalues (eV) -42.69975 -39.79031 -38.72398 -38.03558 -35.48170 -33.34469 -31.96883 -31.69652 -30.49698 -30.19412 -28.48570 -26.04913 -25.78450 -25.16878 -24.11874 -22.77802 -22.14025 -21.86300 -20.60903 -20.38787 -19.48807 -19.13016 -18.12490 -17.29848 -16.48970 -16.06058 -15.90990 -15.70911 -14.87032 -14.66664 -14.45041 -14.23161 -14.15847 -13.73051 -13.67243 -13.58003 -13.39094 -13.01617 -12.91015 -12.86161 -12.66154 -12.52777 -12.36959 -11.91118 -11.66518 -11.54385 -11.16926 -11.09784 -11.00172 -10.93698 -10.78123 -10.69094 -10.37538 -10.26229 -10.09131 -10.06839 -9.90431 -9.76564 -9.37469 -9.25822 -9.11458 -8.98138 -8.37109 -6.86369 -6.06820 -3.30455 1.16341 2.24123 2.51473 3.11530 3.19860 3.47811 3.50488 3.68853 4.04015 4.18851 4.44288 4.46256 4.52421 4.56277 4.70350 4.85057 4.99914 5.14813 5.25721 5.27127 5.29852 5.34363 5.40581 5.42758 5.46266 5.49355 5.54185 5.58118 5.60281 5.64331 5.67816 5.68380 5.88824 5.93505 6.00135 6.03457 6.15854 6.17480 6.29406 6.37716 6.43544 6.46718 6.51092 6.65665 6.66930 6.70147 6.80863 7.06781 7.18182 7.40241 7.96155 8.02141 8.08397 8.57801 9.11148 9.82441 10.29905 11.19362 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012349 B = 0.002816 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.923431 B = 9942.336164 C =11129.477137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.151 3.849 3 H 0.087 0.913 4 N -0.701 5.701 5 C 0.594 3.406 6 O -0.548 6.548 7 C -0.038 4.038 8 C -0.187 4.187 9 C -0.005 4.005 10 N -0.277 5.277 11 N -0.245 5.245 12 C 0.109 3.891 13 C -0.139 4.139 14 C -0.136 4.136 15 C -0.142 4.142 16 C -0.111 4.111 17 H 0.073 0.927 18 C -0.101 4.101 19 C -0.136 4.136 20 C 0.151 3.849 21 N -0.596 5.596 22 C -0.353 4.353 23 H 0.052 0.948 24 C -0.020 4.020 25 N -0.912 5.912 26 Si 1.064 2.936 27 H -0.292 1.292 28 H -0.286 1.286 29 H -0.293 1.293 30 C 0.156 3.844 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.057 0.943 34 H 0.405 0.595 35 H 0.161 0.839 36 H 0.186 0.814 37 H 0.154 0.846 38 H 0.098 0.902 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.093 0.907 44 H 0.056 0.944 45 H 0.054 0.946 46 H 0.052 0.948 47 H 0.057 0.943 48 H 0.072 0.928 49 H 0.015 0.985 50 H 0.269 0.731 51 H 0.014 0.986 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.944 3.731 -17.181 20.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.047 3.953 3 H 0.105 0.895 4 N -0.351 5.351 5 C 0.379 3.621 6 O -0.426 6.426 7 C -0.166 4.166 8 C -0.216 4.216 9 C -0.180 4.180 10 N -0.110 5.110 11 N -0.032 5.032 12 C 0.009 3.991 13 C -0.177 4.177 14 C -0.174 4.174 15 C -0.181 4.181 16 C -0.132 4.132 17 H 0.092 0.908 18 C -0.139 4.139 19 C -0.176 4.176 20 C 0.026 3.974 21 N -0.320 5.320 22 C -0.482 4.482 23 H 0.070 0.930 24 C -0.223 4.223 25 N -0.551 5.551 26 Si 0.893 3.107 27 H -0.219 1.219 28 H -0.211 1.211 29 H -0.220 1.220 30 C 0.030 3.970 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.240 0.760 35 H 0.178 0.822 36 H 0.203 0.797 37 H 0.171 0.829 38 H 0.116 0.884 39 H 0.095 0.905 40 H 0.106 0.894 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.112 0.888 44 H 0.074 0.926 45 H 0.072 0.928 46 H 0.070 0.930 47 H 0.076 0.924 48 H 0.091 0.909 49 H 0.033 0.967 50 H 0.080 0.920 51 H 0.032 0.968 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.960 4.430 -17.188 20.353 hybrid contribution -1.002 -0.231 -0.294 1.069 sum -10.961 4.199 -17.482 21.057 Atomic orbital electron populations 1.22208 0.95368 1.02084 1.02351 1.21110 0.93735 0.97364 0.83132 0.89508 1.45790 1.66087 1.14320 1.08887 1.16890 0.77901 0.85380 0.81885 1.90705 1.50851 1.17230 1.83859 1.21464 1.10539 0.94435 0.90189 1.22312 1.05248 0.94795 0.99250 1.23555 1.04951 0.96168 0.93372 1.73060 1.15987 0.99395 1.22527 1.45777 1.41039 1.09623 1.06784 1.23881 1.00158 0.75657 0.99422 1.23325 1.00364 0.99131 0.94915 1.22683 0.97698 0.97240 0.99780 1.23362 0.96536 0.99195 0.98984 1.21976 0.99524 0.99352 0.92357 0.90811 1.21438 0.99038 0.98945 0.94459 1.21989 0.99713 0.99802 0.96068 1.20833 0.89696 0.96626 0.90287 1.44049 1.50174 1.38667 0.99096 1.19884 1.11861 1.02186 1.14289 0.93014 1.25920 0.94450 1.04332 0.97611 1.70768 1.41775 0.98916 1.43637 0.83550 0.76044 0.74842 0.76225 1.21919 1.21107 1.21996 1.20884 0.89791 0.96143 0.90182 0.92525 0.91156 0.92436 0.75982 0.82177 0.79714 0.82902 0.88380 0.90485 0.89405 0.90216 0.90246 0.88806 0.92551 0.92755 0.92962 0.92386 0.90929 0.96650 0.92026 0.96806 0.92838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 9.14 37.16 0.34 -1.59 16 2 C 0.15 2.07 2.12 -67.93 -0.14 1.93 16 3 H 0.09 1.33 7.65 -51.93 -0.40 0.94 16 4 N -0.70 -9.19 4.46 -54.97 -0.25 -9.44 16 5 C 0.59 8.53 7.75 -12.64 -0.10 8.43 16 6 O -0.55 -8.88 14.15 5.25 0.07 -8.81 16 7 C -0.04 -0.51 6.96 -82.06 -0.57 -1.08 16 8 C -0.19 -2.19 10.50 -38.98 -0.41 -2.60 16 9 C 0.00 -0.06 12.03 -17.43 -0.21 -0.27 16 10 N -0.28 -3.56 11.15 30.59 0.34 -3.22 16 11 N -0.24 -3.22 3.46 -49.91 -0.17 -3.39 16 12 C 0.11 1.24 4.44 -67.12 -0.30 0.94 16 13 C -0.14 -1.25 7.73 -25.92 -0.20 -1.45 16 14 C -0.14 -1.03 8.08 -25.92 -0.21 -1.24 16 15 C -0.14 -1.39 7.82 -25.92 -0.20 -1.60 16 16 C -0.11 -1.75 1.97 -90.50 -0.18 -1.93 16 17 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 18 C -0.10 -1.56 4.86 -26.69 -0.13 -1.69 16 19 C -0.14 -2.44 6.06 -26.83 -0.16 -2.60 16 20 C 0.15 3.44 4.74 -3.93 -0.02 3.42 16 21 N -0.60 -14.44 2.78 -172.58 -0.48 -14.92 16 22 C -0.35 -9.60 9.43 -15.06 -0.14 -9.74 16 23 H 0.05 1.41 7.94 -52.49 -0.42 0.99 16 24 C -0.02 -0.56 4.68 -17.43 -0.08 -0.64 16 25 N -0.91 -27.10 12.60 55.49 0.70 -26.40 16 26 Si 1.06 24.81 29.98 -169.99 -5.10 19.72 16 27 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 28 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 29 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 30 C 0.16 3.15 5.56 -3.71 -0.02 3.13 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.78 6.41 -51.93 -0.33 0.44 16 33 H 0.06 0.72 8.10 -51.93 -0.42 0.30 16 34 H 0.40 4.76 7.45 -40.82 -0.30 4.46 16 35 H 0.16 1.51 7.58 -52.49 -0.40 1.11 16 36 H 0.19 1.49 8.06 -52.49 -0.42 1.07 16 37 H 0.15 1.91 5.66 -51.93 -0.29 1.62 16 38 H 0.10 0.94 7.70 -51.93 -0.40 0.54 16 39 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.09 0.99 8.10 -51.93 -0.42 0.57 16 44 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 45 H 0.05 0.71 6.37 -51.92 -0.33 0.38 16 46 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 48 H 0.07 1.86 6.66 -51.93 -0.35 1.51 16 49 H 0.02 0.36 7.87 -51.93 -0.41 -0.04 16 50 H 0.27 8.10 6.90 -40.82 -0.28 7.82 16 51 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 52 H 0.05 1.07 7.44 -51.93 -0.39 0.69 16 LS Contribution 405.08 15.07 6.10 6.10 Total: -1.00 -31.99 405.08 -10.09 -42.08 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -8.58 Total: 6.84 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: -2.74 Total: -8.56 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: 0.14 Total: -57.37 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.07 Total: -8.81 kcal Atomic # 14 Polarization: 24.81 SS G_CDS: -5.10 Total: 19.72 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -31.99 -10.09 -42.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025423777.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.711 kcal (2) G-P(sol) polarization free energy of solvation -31.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.61 seconds