Wall clock time and date at job start Wed Apr 1 2020 05:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47563 * 2 1 4 4 N 1.46496 * 109.47223 * 240.00071 * 2 1 3 5 5 C 1.34774 * 120.00220 * 84.99877 * 4 2 1 6 6 O 1.21633 * 120.00006 * 354.99413 * 5 4 2 7 7 C 1.47159 * 120.00437 * 174.99186 * 5 4 2 8 8 C 1.38408 * 126.88528 * 4.89397 * 7 5 4 9 9 C 1.39675 * 105.36319 * 180.02562 * 8 7 5 10 10 N 1.30864 * 107.85797 * 359.97438 * 9 8 7 11 11 N 1.28440 * 110.93171 * 359.72360 * 10 9 8 12 12 C 1.46497 * 125.19329 * 180.27866 * 11 10 9 13 13 C 1.53779 * 113.61733 * 40.36937 * 12 11 10 14 14 C 1.53779 * 87.08505 * 220.02120 * 13 12 11 15 15 C 1.53779 * 87.07839 * 25.43190 * 14 13 12 16 16 C 1.53004 * 109.47056 * 120.00443 * 2 1 3 17 17 H 1.08994 * 109.49740 * 59.92822 * 16 2 1 18 18 C 1.53043 * 109.51966 * 299.85068 * 16 2 1 19 19 C 1.53045 * 109.53463 * 178.66681 * 18 16 2 20 20 C 1.52757 * 109.38367 * 61.24364 * 19 18 16 21 21 N 1.46926 * 109.00661 * 305.58334 * 20 19 18 22 22 C 1.36932 * 120.63685 * 233.58527 * 21 20 19 23 23 H 1.07995 * 120.00625 * 147.01323 * 22 21 20 24 24 C 1.38817 * 119.99377 * 327.01323 * 22 21 20 25 25 N 1.31615 * 120.00318 * 336.02173 * 24 22 21 26 26 Si 1.86806 * 119.99877 * 155.75197 * 24 22 21 27 27 H 1.48503 * 109.46796 * 59.99598 * 26 24 22 28 28 H 1.48494 * 109.47076 * 179.97438 * 26 24 22 29 29 H 1.48504 * 109.46748 * 299.99926 * 26 24 22 30 30 C 1.46936 * 118.73569 * 53.31276 * 21 20 19 31 31 H 1.09001 * 109.47379 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47077 * 300.00154 * 1 2 3 33 33 H 1.09005 * 109.46956 * 59.99281 * 1 2 3 34 34 H 0.97001 * 120.00076 * 265.00343 * 4 2 1 35 35 H 1.07998 * 127.31622 * 0.02562 * 8 7 5 36 36 H 1.07997 * 126.06877 * 180.02562 * 9 8 7 37 37 H 1.09005 * 112.85164 * 171.68118 * 12 11 10 38 38 H 1.09000 * 113.61456 * 334.57625 * 13 12 11 39 39 H 1.09002 * 113.61126 * 105.46805 * 13 12 11 40 40 H 1.08995 * 113.61296 * 270.88650 * 14 13 12 41 41 H 1.08992 * 113.69125 * 139.99276 * 14 13 12 42 42 H 1.08998 * 113.61734 * 220.01747 * 15 14 13 43 43 H 1.09002 * 113.69217 * 89.12829 * 15 14 13 44 44 H 1.08998 * 109.46155 * 298.68782 * 18 16 2 45 45 H 1.09009 * 109.46069 * 58.64999 * 18 16 2 46 46 H 1.09003 * 109.49300 * 181.31730 * 19 18 16 47 47 H 1.09001 * 109.49555 * 301.38097 * 19 18 16 48 48 H 1.08997 * 109.51000 * 185.70597 * 20 19 18 49 49 H 1.08997 * 109.43442 * 65.42249 * 20 19 18 50 50 H 0.97007 * 120.00088 * 353.90333 * 25 24 22 51 51 H 1.08998 * 109.58485 * 66.43190 * 30 21 20 52 52 H 1.09005 * 109.58289 * 186.85235 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.7728 1.1364 -2.4360 7 6 2.7405 -0.6810 -3.5294 8 6 3.1251 -2.0069 -3.6280 9 6 3.6266 -2.1514 -4.9235 10 7 3.5342 -0.9909 -5.5213 11 7 3.0167 -0.1124 -4.7404 12 6 2.7651 1.2871 -5.0929 13 6 2.2262 1.4755 -6.5208 14 6 3.1378 2.7101 -6.6178 15 6 4.0234 2.0423 -5.5526 16 6 2.0400 -0.7214 1.2492 17 1 1.6759 -1.7487 1.2502 18 6 1.5335 0.0013 2.4996 19 6 2.0158 -0.7391 3.7492 20 6 3.5431 -0.7433 3.7781 21 7 4.0441 -1.3014 2.5147 22 6 4.9299 -2.3457 2.5158 23 1 4.9013 -3.0789 1.7234 24 6 5.8646 -2.4618 3.5355 25 7 6.2343 -1.3962 4.2139 26 14 6.5922 -4.1317 3.9499 27 1 7.2914 -4.6763 2.7584 28 1 7.5592 -3.9867 5.0675 29 1 5.5047 -5.0592 4.3527 30 6 3.5718 -0.7217 1.2498 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5140 -0.8900 34 1 2.2490 -1.6317 -1.1526 35 1 3.0526 -2.7680 -2.8652 36 1 4.0200 -3.0597 -5.3554 37 1 2.1901 1.8180 -4.3342 38 1 2.5053 0.6720 -7.2024 39 1 1.1632 1.7135 -6.5584 40 1 2.6639 3.6306 -6.2770 41 1 3.6263 2.8189 -7.5860 42 1 4.4114 2.7380 -4.8086 43 1 4.7946 1.3936 -5.9681 44 1 1.9182 1.0211 2.5105 45 1 0.4437 0.0245 2.4893 46 1 1.6353 -0.2372 4.6389 47 1 1.6515 -1.7661 3.7269 48 1 3.8898 -1.3553 4.6108 49 1 3.9065 0.2775 3.8962 50 1 5.9222 -0.5179 3.9453 51 1 3.9376 0.3009 1.1575 52 1 3.9375 -1.3195 0.4149 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025423777.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:17 Heat of formation + Delta-G solvation = 51.413591 kcal Electronic energy + Delta-G solvation = -31390.304559 eV Core-core repulsion = 27391.405902 eV Total energy + Delta-G solvation = -3998.898657 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 4.68 seconds Orbital eigenvalues (eV) -43.62724 -40.97092 -39.51044 -39.47660 -36.93032 -34.93205 -33.12576 -32.72592 -32.26440 -31.36834 -29.82666 -27.04392 -26.79745 -26.55911 -25.37374 -24.04030 -23.72523 -22.87729 -21.82584 -21.48663 -20.78641 -20.16733 -19.35252 -19.05159 -17.55382 -17.07489 -16.92073 -16.51810 -16.32270 -16.10483 -15.70184 -15.58262 -15.43035 -15.33692 -15.05833 -14.91742 -14.45367 -14.25268 -14.00505 -13.91164 -13.76639 -13.63812 -13.46502 -13.30786 -12.96145 -12.68496 -12.59109 -12.34401 -12.25414 -11.95951 -11.93571 -11.88483 -11.74440 -11.67566 -11.65904 -11.60966 -11.38125 -11.10792 -10.96896 -10.48663 -10.37894 -10.06758 -9.98647 -8.90394 -8.21072 -5.45444 0.15888 1.31685 1.58996 1.60955 1.66291 1.84810 2.07201 2.15936 2.65847 3.21856 3.27273 3.41388 3.42835 3.50632 3.69157 3.72504 3.80740 3.91843 3.92642 3.96803 4.10436 4.22559 4.34767 4.39257 4.46528 4.52590 4.57002 4.63305 4.64401 4.69322 4.75142 4.77671 4.80252 4.83113 4.85383 4.91532 4.94368 4.95324 5.02220 5.12058 5.17937 5.20971 5.26091 5.29277 5.39249 5.42614 5.55522 5.57673 5.74885 5.87994 6.33445 6.39714 6.96171 7.07301 7.08185 7.77758 8.25117 8.99628 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012349 B = 0.002816 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.923431 B = 9942.336164 C =11129.477137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.159 3.841 3 H 0.069 0.931 4 N -0.695 5.695 5 C 0.593 3.407 6 O -0.572 6.572 7 C -0.065 4.065 8 C -0.182 4.182 9 C -0.008 4.008 10 N -0.290 5.290 11 N -0.252 5.252 12 C 0.093 3.907 13 C -0.132 4.132 14 C -0.120 4.120 15 C -0.144 4.144 16 C -0.093 4.093 17 H 0.080 0.920 18 C -0.097 4.097 19 C -0.125 4.125 20 C 0.155 3.845 21 N -0.614 5.614 22 C -0.355 4.355 23 H 0.052 0.948 24 C -0.074 4.074 25 N -0.942 5.942 26 Si 1.114 2.886 27 H -0.275 1.275 28 H -0.295 1.295 29 H -0.276 1.276 30 C 0.156 3.844 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.050 0.950 34 H 0.412 0.588 35 H 0.182 0.818 36 H 0.217 0.783 37 H 0.139 0.861 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.100 0.900 41 H 0.095 0.905 42 H 0.075 0.925 43 H 0.084 0.916 44 H 0.052 0.948 45 H 0.093 0.907 46 H 0.075 0.925 47 H 0.058 0.942 48 H 0.037 0.963 49 H -0.004 1.004 50 H 0.251 0.749 51 H -0.005 1.005 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.725 2.598 -18.375 22.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.054 3.946 3 H 0.087 0.913 4 N -0.346 5.346 5 C 0.379 3.621 6 O -0.452 6.452 7 C -0.193 4.193 8 C -0.211 4.211 9 C -0.183 4.183 10 N -0.123 5.123 11 N -0.040 5.040 12 C -0.007 4.007 13 C -0.170 4.170 14 C -0.158 4.158 15 C -0.182 4.182 16 C -0.114 4.114 17 H 0.099 0.901 18 C -0.135 4.135 19 C -0.164 4.164 20 C 0.029 3.971 21 N -0.339 5.339 22 C -0.485 4.485 23 H 0.069 0.931 24 C -0.271 4.271 25 N -0.583 5.583 26 Si 0.938 3.062 27 H -0.200 1.200 28 H -0.221 1.221 29 H -0.202 1.202 30 C 0.031 3.969 31 H 0.088 0.912 32 H 0.103 0.897 33 H 0.069 0.931 34 H 0.249 0.751 35 H 0.199 0.801 36 H 0.233 0.767 37 H 0.156 0.844 38 H 0.111 0.889 39 H 0.104 0.896 40 H 0.119 0.881 41 H 0.114 0.886 42 H 0.094 0.906 43 H 0.103 0.897 44 H 0.071 0.929 45 H 0.111 0.889 46 H 0.093 0.907 47 H 0.077 0.923 48 H 0.055 0.945 49 H 0.014 0.986 50 H 0.061 0.939 51 H 0.013 0.987 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -11.776 3.295 -18.409 22.100 hybrid contribution -0.407 0.145 0.039 0.433 sum -12.182 3.440 -18.370 22.309 Atomic orbital electron populations 1.22137 0.93139 1.03089 1.02757 1.20963 0.95253 0.96023 0.82314 0.91298 1.45727 1.65833 1.14596 1.08433 1.17041 0.77593 0.85111 0.82336 1.90689 1.51958 1.18251 1.84331 1.21568 1.11989 0.95419 0.90349 1.22659 1.04095 0.94424 0.99931 1.24151 1.04247 0.96697 0.93226 1.73051 1.16295 0.99980 1.22945 1.45978 1.41137 1.10145 1.06708 1.24047 1.01174 0.75250 1.00246 1.23283 1.01131 0.99571 0.92997 1.22674 0.96466 0.96957 0.99703 1.23356 0.96102 0.99056 0.99686 1.21741 0.95701 1.00167 0.93766 0.90147 1.21452 1.01293 0.98101 0.92686 1.21849 0.95425 1.00640 0.98521 1.20732 0.93231 0.94507 0.88623 1.44302 1.50212 1.38550 1.00793 1.20178 1.11750 1.02640 1.13905 0.93071 1.27291 0.95156 1.06628 0.98018 1.70901 1.43730 0.98721 1.44967 0.82882 0.75701 0.71383 0.76223 1.20031 1.22148 1.20220 1.20969 0.93041 0.94531 0.88366 0.91164 0.89724 0.93069 0.75116 0.80085 0.76667 0.84388 0.88950 0.89614 0.88115 0.88648 0.90643 0.89700 0.92927 0.88884 0.90675 0.92325 0.94470 0.98570 0.93904 0.98715 0.93194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.20 9.14 71.98 0.66 -2.55 16 2 C 0.16 4.13 2.12 44.99 0.10 4.22 16 3 H 0.07 2.08 7.65 -2.39 -0.02 2.06 16 4 N -0.70 -17.57 4.46 -446.06 -1.99 -19.56 16 5 C 0.59 16.94 7.75 86.59 0.67 17.61 16 6 O -0.57 -18.77 14.15 -4.14 -0.06 -18.83 16 7 C -0.07 -1.74 6.96 40.78 0.28 -1.46 16 8 C -0.18 -4.01 10.50 22.66 0.24 -3.77 16 9 C -0.01 -0.17 12.03 85.18 1.02 0.85 16 10 N -0.29 -7.25 11.15 -57.14 -0.64 -7.88 16 11 N -0.25 -6.60 3.46 -311.81 -1.08 -7.68 16 12 C 0.09 2.13 4.44 45.52 0.20 2.33 16 13 C -0.13 -2.26 7.73 31.12 0.24 -2.02 16 14 C -0.12 -1.66 8.08 31.12 0.25 -1.41 16 15 C -0.14 -2.81 7.82 31.12 0.24 -2.56 16 16 C -0.09 -2.78 1.97 -10.72 -0.02 -2.80 16 17 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 18 C -0.10 -2.77 4.86 30.62 0.15 -2.62 16 19 C -0.13 -4.28 6.06 30.53 0.19 -4.10 16 20 C 0.15 7.19 4.74 86.22 0.41 7.59 16 21 N -0.61 -30.20 2.78 -699.93 -1.95 -32.14 16 22 C -0.35 -19.49 9.43 84.04 0.79 -18.70 16 23 H 0.05 2.77 7.94 -2.91 -0.02 2.75 16 24 C -0.07 -4.20 4.68 84.86 0.40 -3.80 16 25 N -0.94 -57.84 12.60 21.65 0.27 -57.57 16 26 Si 1.11 50.26 29.98 68.60 2.06 52.32 16 27 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 28 H -0.30 -13.71 7.11 99.48 0.71 -13.00 16 29 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 30 C 0.16 6.32 5.56 86.36 0.48 6.80 16 31 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.08 1.54 6.41 -2.39 -0.02 1.52 16 33 H 0.05 1.17 8.10 -2.38 -0.02 1.15 16 34 H 0.41 9.10 7.45 -92.71 -0.69 8.41 16 35 H 0.18 3.02 7.58 -2.91 -0.02 3.00 16 36 H 0.22 2.92 8.06 -2.91 -0.02 2.90 16 37 H 0.14 3.57 5.66 -2.38 -0.01 3.55 16 38 H 0.09 1.71 7.70 -2.39 -0.02 1.69 16 39 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.08 1.80 8.10 -2.39 -0.02 1.78 16 44 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.09 2.02 6.37 -2.38 -0.02 2.00 16 46 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 47 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 48 H 0.04 1.96 6.66 -2.39 -0.02 1.94 16 49 H 0.00 -0.18 7.87 -2.39 -0.02 -0.20 16 50 H 0.25 15.88 6.90 -92.70 -0.64 15.24 16 51 H -0.01 -0.22 8.14 -2.39 -0.02 -0.24 16 52 H 0.05 2.01 7.44 -2.38 -0.02 1.99 16 Total: -1.00 -71.88 405.08 3.27 -68.61 By element: Atomic # 1 Polarization: 28.77 SS G_CDS: 0.36 Total: 29.12 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: 6.30 Total: -6.38 kcal Atomic # 7 Polarization: -119.45 SS G_CDS: -5.38 Total: -124.83 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.06 Total: -18.83 kcal Atomic # 14 Polarization: 50.26 SS G_CDS: 2.06 Total: 52.32 kcal Total: -71.88 3.27 -68.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025423777.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.023 kcal (2) G-P(sol) polarization free energy of solvation -71.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.68 seconds