Wall clock time and date at job start Wed Apr 1 2020 05:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47075 * 2 1 4 4 N 1.46502 * 109.47278 * 240.00023 * 2 1 3 5 5 C 1.34775 * 120.00122 * 84.99654 * 4 2 1 6 6 O 1.21605 * 119.99832 * 0.02562 * 5 4 2 7 7 C 1.47423 * 120.00228 * 179.97438 * 5 4 2 8 8 C 1.38046 * 126.41254 * 0.03153 * 7 5 4 9 9 N 1.34263 * 107.41896 * 179.97438 * 8 7 5 10 10 C 1.46493 * 125.75386 * 179.97438 * 9 8 7 11 11 N 1.39933 * 108.48655 * 359.97438 * 9 8 7 12 12 C 1.30445 * 108.90056 * 359.73822 * 11 9 8 13 13 C 1.50704 * 125.98875 * 180.26688 * 12 11 9 14 14 C 1.52999 * 117.50058 * 8.78747 * 13 12 11 15 15 C 1.52992 * 59.99964 * 252.51040 * 14 13 12 16 16 C 1.53003 * 109.46988 * 119.99701 * 2 1 3 17 17 H 1.09000 * 109.49725 * 59.94090 * 16 2 1 18 18 C 1.53033 * 109.49805 * 299.83661 * 16 2 1 19 19 C 1.53076 * 109.65646 * 178.74886 * 18 16 2 20 20 C 1.53183 * 109.29478 * 61.15632 * 19 18 16 21 21 N 1.46930 * 108.89468 * 305.57480 * 20 19 18 22 22 C 1.36937 * 120.63259 * 233.51494 * 21 20 19 23 23 H 1.08000 * 119.99761 * 151.83401 * 22 21 20 24 24 C 1.38806 * 120.00219 * 331.83653 * 22 21 20 25 25 N 1.31624 * 120.00191 * 343.07619 * 24 22 21 26 26 Si 1.86800 * 120.00146 * 163.07294 * 24 22 21 27 27 H 1.48506 * 109.46812 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.47258 * 119.99807 * 26 24 22 29 29 H 1.48499 * 109.47344 * 240.00342 * 26 24 22 30 30 C 1.46925 * 118.73328 * 53.53726 * 21 20 19 31 31 H 1.09000 * 109.47503 * 299.99868 * 1 2 3 32 32 H 1.09005 * 109.47395 * 60.00056 * 1 2 3 33 33 H 1.09005 * 109.47281 * 179.97438 * 1 2 3 34 34 H 0.96998 * 119.99869 * 265.00405 * 4 2 1 35 35 H 1.08006 * 126.29304 * 359.94639 * 8 7 5 36 36 H 1.08993 * 109.47446 * 90.00389 * 10 9 8 37 37 H 1.09005 * 109.46909 * 209.99852 * 10 9 8 38 38 H 1.08995 * 109.47585 * 329.99381 * 10 9 8 39 39 H 1.09004 * 115.54627 * 154.49995 * 13 12 11 40 40 H 1.08999 * 117.49606 * 0.02562 * 14 13 12 41 41 H 1.08996 * 117.49758 * 145.01838 * 14 13 12 42 42 H 1.08997 * 117.50211 * 252.50424 * 15 14 13 43 43 H 1.09006 * 117.49839 * 107.49212 * 15 14 13 44 44 H 1.08994 * 109.46674 * 298.70673 * 18 16 2 45 45 H 1.09001 * 109.46050 * 58.66664 * 18 16 2 46 46 H 1.09005 * 109.39190 * 301.27539 * 19 18 16 47 47 H 1.09004 * 109.62337 * 181.17332 * 19 18 16 48 48 H 1.09005 * 109.58619 * 185.72200 * 20 19 18 49 49 H 1.08998 * 109.58733 * 65.43770 * 20 19 18 50 50 H 0.96995 * 120.00379 * 180.02562 * 25 24 22 51 51 H 1.09001 * 109.58688 * 66.18006 * 30 21 20 52 52 H 1.08999 * 109.58376 * 186.60219 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0183 -2.3572 6 8 1.8582 1.1617 -2.4117 7 6 2.6390 -0.7131 -3.5607 8 6 3.0035 -2.0417 -3.6485 9 7 3.3908 -2.2694 -4.9137 10 6 3.8596 -3.5504 -5.4479 11 7 3.2711 -1.0769 -5.6359 12 6 2.8190 -0.1457 -4.8421 13 6 2.5412 1.2855 -5.2238 14 6 2.6116 1.6469 -6.7088 15 6 3.7121 2.1150 -5.7547 16 6 2.0399 -0.7212 1.2493 17 1 1.6760 -1.7486 1.2503 18 6 1.5335 0.0022 2.4992 19 6 2.0158 -0.7344 3.7514 20 6 3.5474 -0.7379 3.7782 21 7 4.0442 -1.3004 2.5150 22 6 4.9307 -2.3440 2.5168 23 1 4.9517 -3.0362 1.6881 24 6 5.8024 -2.5124 3.5839 25 7 6.0203 -1.5185 4.4189 26 14 6.6663 -4.1495 3.8350 27 1 6.2542 -5.0955 2.7669 28 1 8.1363 -3.9476 3.7765 29 1 6.2955 -4.7067 5.1605 30 6 3.5718 -0.7216 1.2499 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 2.2490 -1.6318 -1.1526 35 1 2.9816 -2.7649 -2.8467 36 1 3.0109 -4.1167 -5.8312 37 1 4.5698 -3.3695 -6.2549 38 1 4.3472 -4.1180 -4.6554 39 1 1.7962 1.7981 -4.6154 40 1 2.8583 0.8495 -7.4097 41 1 1.9125 2.3974 -7.0778 42 1 3.7372 3.1735 -5.4959 43 1 4.6833 1.6257 -5.8278 44 1 1.9181 1.0220 2.5095 45 1 0.4438 0.0254 2.4889 46 1 1.6500 -1.7610 3.7309 47 1 1.6375 -0.2307 4.6409 48 1 3.8970 -1.3470 4.6119 49 1 3.9132 0.2825 3.8926 50 1 6.6296 -1.6360 5.1643 51 1 3.9375 0.3011 1.1569 52 1 3.9375 -1.3198 0.4153 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025432721.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:44 Heat of formation + Delta-G solvation = 57.048030 kcal Electronic energy + Delta-G solvation = -31128.952958 eV Core-core repulsion = 27130.298628 eV Total energy + Delta-G solvation = -3998.654330 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -42.47516 -40.61576 -39.19557 -38.07303 -36.57959 -34.64456 -33.97962 -32.77337 -32.22182 -30.97204 -29.75634 -28.16891 -27.10321 -25.36093 -24.20671 -23.58715 -23.39380 -23.18636 -21.94822 -21.25067 -20.58005 -20.19592 -18.80348 -18.47101 -17.24740 -16.90944 -16.69895 -16.62942 -16.26049 -15.84295 -15.74217 -15.58030 -15.27581 -15.02091 -14.91345 -14.65456 -14.15955 -14.00440 -13.95357 -13.73680 -13.60051 -13.51945 -13.20566 -12.96380 -12.88627 -12.78423 -12.55088 -12.42543 -12.21700 -12.17835 -12.04742 -11.92232 -11.74696 -11.72587 -11.47068 -11.37352 -11.19884 -11.04336 -10.68518 -10.52070 -10.22683 -10.02090 -9.55191 -8.64800 -7.84269 -5.30616 0.53210 1.02759 1.43769 1.47512 1.49068 1.59300 2.33712 2.47287 2.52584 3.03435 3.30368 3.31760 3.56368 3.59264 3.90329 3.98200 3.99671 4.07022 4.10096 4.13758 4.25426 4.32733 4.39943 4.41895 4.46957 4.52328 4.57530 4.69312 4.69854 4.73814 4.74680 4.82467 4.90801 4.92831 4.94634 5.00461 5.11011 5.16034 5.20366 5.24923 5.29917 5.31955 5.38828 5.42186 5.52353 5.58249 5.66272 5.71715 5.81438 5.89467 6.41202 6.51253 6.74174 7.17106 7.40278 7.88742 8.41652 9.22125 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010786 B = 0.002957 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2595.389004 B = 9466.006809 C =10971.378937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.159 3.841 3 H 0.062 0.938 4 N -0.711 5.711 5 C 0.594 3.406 6 O -0.581 6.581 7 C -0.314 4.314 8 C 0.119 3.881 9 N -0.358 5.358 10 C 0.086 3.914 11 N -0.323 5.323 12 C 0.146 3.854 13 C -0.101 4.101 14 C -0.150 4.150 15 C -0.158 4.158 16 C -0.092 4.092 17 H 0.082 0.918 18 C -0.098 4.098 19 C -0.129 4.129 20 C 0.172 3.828 21 N -0.608 5.608 22 C -0.257 4.257 23 H 0.073 0.927 24 C -0.055 4.055 25 N -0.939 5.939 26 Si 0.967 3.033 27 H -0.260 1.260 28 H -0.297 1.297 29 H -0.292 1.292 30 C 0.156 3.844 31 H 0.078 0.922 32 H 0.046 0.954 33 H 0.069 0.931 34 H 0.407 0.593 35 H 0.222 0.778 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.119 0.881 39 H 0.122 0.878 40 H 0.097 0.903 41 H 0.117 0.883 42 H 0.111 0.889 43 H 0.086 0.914 44 H 0.047 0.953 45 H 0.087 0.913 46 H 0.057 0.943 47 H 0.068 0.932 48 H 0.051 0.949 49 H -0.013 1.013 50 H 0.248 0.752 51 H -0.008 1.008 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.879 -3.158 -18.747 21.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.053 3.947 3 H 0.080 0.920 4 N -0.361 5.361 5 C 0.383 3.617 6 O -0.462 6.462 7 C -0.329 4.329 8 C -0.034 4.034 9 N -0.135 5.135 10 C -0.053 4.053 11 N -0.144 5.144 12 C -0.020 4.020 13 C -0.121 4.121 14 C -0.188 4.188 15 C -0.196 4.196 16 C -0.112 4.112 17 H 0.100 0.900 18 C -0.136 4.136 19 C -0.168 4.168 20 C 0.047 3.953 21 N -0.331 5.331 22 C -0.387 4.387 23 H 0.091 0.909 24 C -0.250 4.250 25 N -0.585 5.585 26 Si 0.795 3.205 27 H -0.184 1.184 28 H -0.225 1.225 29 H -0.219 1.219 30 C 0.031 3.969 31 H 0.097 0.903 32 H 0.065 0.935 33 H 0.088 0.912 34 H 0.243 0.757 35 H 0.238 0.762 36 H 0.116 0.884 37 H 0.113 0.887 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.115 0.885 41 H 0.135 0.865 42 H 0.130 0.870 43 H 0.104 0.896 44 H 0.065 0.935 45 H 0.106 0.894 46 H 0.076 0.924 47 H 0.086 0.914 48 H 0.069 0.931 49 H 0.005 0.995 50 H 0.057 0.943 51 H 0.010 0.990 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.522 -2.815 -19.925 22.708 hybrid contribution 0.969 -0.712 1.501 1.923 sum -9.553 -3.527 -18.424 21.051 Atomic orbital electron populations 1.22118 0.93760 1.02845 1.02266 1.20825 0.94758 0.96048 0.83024 0.92021 1.45797 1.67252 1.14255 1.08816 1.17412 0.76219 0.85626 0.82433 1.90687 1.53095 1.16948 1.85456 1.20251 1.21922 0.95222 0.95537 1.23628 0.93933 0.96517 0.89313 1.48659 1.47897 1.09824 1.07090 1.22417 1.02008 0.78264 1.02579 1.77029 1.25830 0.91410 1.20174 1.21607 0.95031 0.94884 0.90501 1.20476 1.04040 0.88742 0.98888 1.23035 1.01626 1.03419 0.90693 1.22983 0.93337 1.00281 1.03037 1.21722 0.95908 1.00053 0.93539 0.89957 1.21447 1.00898 0.98077 0.93203 1.22000 0.96528 1.00272 0.98002 1.20623 0.91049 0.94583 0.89068 1.44328 1.49972 1.37849 1.00970 1.19592 1.10770 1.02441 1.05926 0.90919 1.25844 0.98544 1.00498 1.00118 1.70218 1.38834 1.31286 1.18181 0.85216 0.77338 0.80200 0.77752 1.18353 1.22466 1.21931 1.20952 0.92912 0.94691 0.88383 0.90278 0.93485 0.91151 0.75683 0.76199 0.88422 0.88672 0.86220 0.86002 0.88469 0.86456 0.87033 0.89553 0.93460 0.89429 0.92432 0.91378 0.93060 0.99536 0.94315 0.98999 0.92612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.42 9.14 71.98 0.66 -2.76 16 2 C 0.16 4.33 2.16 44.99 0.10 4.43 16 3 H 0.06 2.03 7.58 -2.39 -0.02 2.01 16 4 N -0.71 -18.04 4.46 -445.81 -1.99 -20.03 16 5 C 0.59 17.73 7.78 86.66 0.67 18.40 16 6 O -0.58 -21.16 14.66 -4.05 -0.06 -21.21 16 7 C -0.31 -8.31 6.13 -20.15 -0.12 -8.43 16 8 C 0.12 2.22 10.99 84.28 0.93 3.15 16 9 N -0.36 -6.68 3.98 -367.80 -1.46 -8.14 16 10 C 0.09 0.73 11.44 127.77 1.46 2.19 16 11 N -0.32 -8.16 12.08 -46.68 -0.56 -8.73 16 12 C 0.15 4.04 6.79 43.52 0.30 4.34 16 13 C -0.10 -2.64 5.65 -11.54 -0.07 -2.70 16 14 C -0.15 -3.01 10.14 30.59 0.31 -2.70 16 15 C -0.16 -3.51 10.23 30.59 0.31 -3.20 16 16 C -0.09 -2.78 1.98 -10.72 -0.02 -2.80 16 17 H 0.08 2.37 8.14 -2.39 -0.02 2.36 16 18 C -0.10 -2.96 4.85 30.63 0.15 -2.82 16 19 C -0.13 -4.60 6.09 30.68 0.19 -4.41 16 20 C 0.17 8.29 5.30 86.36 0.46 8.75 16 21 N -0.61 -29.83 3.00 -699.11 -2.09 -31.92 16 22 C -0.26 -13.67 9.58 84.03 0.81 -12.86 16 23 H 0.07 3.66 7.89 -2.91 -0.02 3.63 16 24 C -0.06 -3.03 4.92 84.86 0.42 -2.61 16 25 N -0.94 -55.74 11.20 21.65 0.24 -55.49 16 26 Si 0.97 43.74 29.59 68.60 2.03 45.76 16 27 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 28 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 29 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 30 C 0.16 6.28 5.55 86.36 0.48 6.76 16 31 H 0.08 1.60 6.41 -2.39 -0.02 1.59 16 32 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 33 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 34 H 0.41 8.26 7.34 -92.71 -0.68 7.58 16 35 H 0.22 2.20 7.46 -2.91 -0.02 2.18 16 36 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 38 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 39 H 0.12 3.55 6.74 -2.39 -0.02 3.53 16 40 H 0.10 1.98 7.90 -2.39 -0.02 1.96 16 41 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 43 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 44 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.09 2.07 6.37 -2.39 -0.02 2.06 16 46 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 47 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 48 H 0.05 2.80 6.06 -2.38 -0.01 2.78 16 49 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 50 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 51 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 52 H 0.06 2.13 7.44 -2.39 -0.02 2.11 16 Total: -1.00 -76.05 412.47 3.36 -72.69 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: 0.24 Total: 24.35 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: 7.02 Total: 2.72 kcal Atomic # 7 Polarization: -118.44 SS G_CDS: -5.87 Total: -124.31 kcal Atomic # 8 Polarization: -21.16 SS G_CDS: -0.06 Total: -21.21 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -76.05 3.36 -72.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025432721.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.740 kcal (2) G-P(sol) polarization free energy of solvation -76.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds