Wall clock time and date at job start Wed Apr 1 2020 05:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46953 * 2 1 4 4 N 1.46503 * 109.47013 * 119.99746 * 2 1 3 5 5 C 1.34777 * 119.99997 * 274.99950 * 4 2 1 6 6 O 1.21606 * 119.99778 * 359.72277 * 5 4 2 7 7 C 1.47431 * 120.00133 * 180.02562 * 5 4 2 8 8 C 1.38041 * 126.41273 * 359.69096 * 7 5 4 9 9 N 1.34263 * 107.41668 * 179.87045 * 8 7 5 10 10 C 1.46502 * 125.75562 * 180.14231 * 9 8 7 11 11 N 1.39934 * 108.48914 * 0.39005 * 9 8 7 12 12 C 1.30447 * 108.89984 * 359.75207 * 11 9 8 13 13 C 1.50700 * 125.98897 * 179.97438 * 12 11 9 14 14 C 1.53000 * 117.49809 * 8.65157 * 13 12 11 15 15 C 1.52994 * 117.50199 * 300.02431 * 13 12 11 16 16 C 1.52998 * 109.46850 * 239.99486 * 2 1 3 17 17 H 1.09010 * 109.49503 * 185.06247 * 16 2 1 18 18 C 1.53033 * 109.49647 * 65.00296 * 16 2 1 19 19 C 1.53043 * 109.54068 * 178.67843 * 18 16 2 20 20 C 1.53196 * 109.30854 * 61.36157 * 19 18 16 21 21 N 1.46923 * 108.77845 * 305.36583 * 20 19 18 22 22 C 1.36929 * 120.63340 * 233.61092 * 21 20 19 23 23 H 1.08000 * 120.00706 * 152.62555 * 22 21 20 24 24 C 1.38819 * 120.00056 * 332.62451 * 22 21 20 25 25 N 1.31616 * 120.00168 * 159.34464 * 24 22 21 26 26 Si 1.86798 * 119.99736 * 339.34643 * 24 22 21 27 27 H 1.48504 * 109.47265 * 92.94975 * 26 24 22 28 28 H 1.48500 * 109.46983 * 212.95277 * 26 24 22 29 29 H 1.48503 * 109.47375 * 332.95181 * 26 24 22 30 30 C 1.46936 * 118.73551 * 53.61065 * 21 20 19 31 31 H 1.09002 * 109.47375 * 299.99939 * 1 2 3 32 32 H 1.08993 * 109.47468 * 60.00309 * 1 2 3 33 33 H 1.09005 * 109.46797 * 180.02562 * 1 2 3 34 34 H 0.96998 * 120.00365 * 95.00204 * 4 2 1 35 35 H 1.08003 * 126.29409 * 359.97438 * 8 7 5 36 36 H 1.08997 * 109.46626 * 270.27087 * 10 9 8 37 37 H 1.08996 * 109.46841 * 30.26596 * 10 9 8 38 38 H 1.08995 * 109.47167 * 150.26749 * 10 9 8 39 39 H 1.09001 * 115.54652 * 154.35090 * 13 12 11 40 40 H 1.08999 * 117.49572 * 359.97438 * 14 13 12 41 41 H 1.09001 * 117.49330 * 145.01522 * 14 13 12 42 42 H 1.08997 * 117.50095 * 214.97399 * 15 13 12 43 43 H 1.09006 * 117.49912 * 0.02562 * 15 13 12 44 44 H 1.09000 * 109.46276 * 298.69968 * 18 16 2 45 45 H 1.09001 * 109.46294 * 58.67496 * 18 16 2 46 46 H 1.08996 * 109.50198 * 181.31610 * 19 18 16 47 47 H 1.09001 * 109.49826 * 301.38527 * 19 18 16 48 48 H 1.09000 * 109.58407 * 65.15923 * 20 19 18 49 49 H 1.09002 * 109.58410 * 185.43656 * 20 19 18 50 50 H 0.97001 * 120.00028 * 179.97438 * 25 24 22 51 51 H 1.08999 * 109.58102 * 186.60621 * 30 21 20 52 52 H 1.08995 * 109.58603 * 66.17856 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3572 6 8 1.8626 1.1630 2.4104 7 6 2.6390 -0.7129 3.5609 8 6 2.9983 -2.0428 3.6500 9 7 3.3909 -2.2691 4.9139 10 6 3.8592 -3.5502 5.4484 11 7 3.2718 -1.0763 5.6359 12 6 2.8253 -0.1438 4.8406 13 6 2.5549 1.2893 5.2203 14 6 3.0127 1.7516 6.6051 15 6 1.5234 1.5461 6.3207 16 6 2.0400 -0.7214 -1.2492 17 1 3.1263 -0.8008 -1.2054 18 6 1.6354 0.0685 -2.4960 19 6 2.1733 -0.6348 -3.7443 20 6 1.5612 -2.0359 -3.8397 21 7 1.8219 -2.7525 -2.5838 22 6 2.4222 -3.9832 -2.5944 23 1 3.0005 -4.3094 -1.7426 24 6 2.2874 -4.8117 -3.7001 25 7 3.1534 -5.7814 -3.9053 26 14 0.8770 -4.5503 -4.8966 27 1 1.3238 -3.6659 -6.0029 28 1 0.4495 -5.8597 -5.4515 29 1 -0.2635 -3.9172 -4.1868 30 6 1.4263 -2.1234 -1.3163 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5137 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 2.2491 -1.6317 1.1528 35 1 2.9705 -2.7676 2.8498 36 1 3.0102 -4.1159 5.8321 37 1 4.3460 -4.1184 4.6558 38 1 4.5697 -3.3694 6.2549 39 1 2.6109 2.0103 4.4047 40 1 3.5090 1.0191 7.2416 41 1 3.3700 2.7770 6.7007 42 1 0.9010 2.4362 6.2293 43 1 1.0406 0.6784 6.7703 44 1 0.5485 0.1269 -2.5521 45 1 2.0507 1.0747 -2.4391 46 1 1.9049 -0.0594 -4.6302 47 1 3.2583 -0.7151 -3.6776 48 1 0.4857 -1.9548 -3.9977 49 1 2.0130 -2.5761 -4.6717 50 1 3.0590 -6.3605 -4.6777 51 1 1.7911 -2.7222 -0.4818 52 1 0.3400 -2.0494 -1.2685 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025432729.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:22 Heat of formation + Delta-G solvation = 84.643634 kcal Electronic energy + Delta-G solvation = -31126.282066 eV Core-core repulsion = 27128.824371 eV Total energy + Delta-G solvation = -3997.457695 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 5.83 seconds Orbital eigenvalues (eV) -41.62307 -39.57035 -38.06600 -37.24715 -35.27545 -33.27033 -33.04472 -31.64753 -30.86114 -30.07853 -28.39854 -27.48330 -25.36480 -24.59744 -23.40950 -22.63612 -22.42042 -21.99317 -21.05278 -19.95488 -19.47435 -18.79622 -17.79194 -16.76409 -16.27982 -15.94792 -15.61747 -15.51227 -15.34485 -14.87375 -14.75396 -14.47493 -14.06031 -13.92805 -13.55819 -13.33118 -13.24541 -13.03290 -12.98340 -12.92671 -12.47741 -12.27928 -12.07543 -11.99586 -11.73512 -11.66588 -11.48506 -11.20949 -11.14302 -10.95983 -10.65120 -10.52789 -10.48770 -10.40169 -10.11842 -9.90976 -9.67951 -9.62206 -9.47390 -9.38079 -8.96956 -8.67114 -8.63805 -6.99745 -5.99885 -3.35111 1.35966 1.96989 2.11894 3.29514 3.36669 3.45727 3.46707 3.48573 3.87909 4.10183 4.33010 4.49441 4.58109 4.77628 4.80286 4.81333 4.90736 4.98052 5.07620 5.08713 5.22382 5.22655 5.29890 5.32018 5.37514 5.51515 5.53201 5.55118 5.60960 5.70417 5.71712 5.85936 5.99688 6.00692 6.05659 6.08614 6.12296 6.19916 6.27665 6.31294 6.37937 6.41942 6.53008 6.57344 6.60684 6.65631 6.71977 6.76900 6.97802 7.39605 7.72045 7.91150 8.26848 8.42829 8.89216 9.67771 10.06495 11.16029 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014621 B = 0.002724 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.568897 B =10275.942984 C =11741.061096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.153 3.847 3 H 0.084 0.916 4 N -0.721 5.721 5 C 0.596 3.404 6 O -0.546 6.546 7 C -0.282 4.282 8 C 0.102 3.898 9 N -0.361 5.361 10 C 0.096 3.904 11 N -0.302 5.302 12 C 0.162 3.838 13 C -0.079 4.079 14 C -0.170 4.170 15 C -0.160 4.160 16 C -0.115 4.115 17 H 0.077 0.923 18 C -0.102 4.102 19 C -0.135 4.135 20 C 0.124 3.876 21 N -0.605 5.605 22 C -0.260 4.260 23 H 0.084 0.916 24 C 0.024 3.976 25 N -0.909 5.909 26 Si 0.884 3.116 27 H -0.289 1.289 28 H -0.304 1.304 29 H -0.271 1.271 30 C 0.154 3.846 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.398 0.602 35 H 0.186 0.814 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.140 0.860 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.101 0.899 43 H 0.092 0.908 44 H 0.060 0.940 45 H 0.053 0.947 46 H 0.054 0.946 47 H 0.063 0.937 48 H 0.024 0.976 49 H 0.071 0.929 50 H 0.262 0.738 51 H 0.055 0.945 52 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.222 10.178 17.205 20.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.048 3.952 3 H 0.102 0.898 4 N -0.372 5.372 5 C 0.383 3.617 6 O -0.425 6.425 7 C -0.297 4.297 8 C -0.049 4.049 9 N -0.138 5.138 10 C -0.045 4.045 11 N -0.123 5.123 12 C -0.005 4.005 13 C -0.099 4.099 14 C -0.208 4.208 15 C -0.198 4.198 16 C -0.135 4.135 17 H 0.095 0.905 18 C -0.140 4.140 19 C -0.174 4.174 20 C -0.001 4.001 21 N -0.329 5.329 22 C -0.388 4.388 23 H 0.101 0.899 24 C -0.175 4.175 25 N -0.552 5.552 26 Si 0.714 3.286 27 H -0.216 1.216 28 H -0.233 1.233 29 H -0.196 1.196 30 C 0.028 3.972 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.233 0.767 35 H 0.203 0.797 36 H 0.098 0.902 37 H 0.113 0.887 38 H 0.111 0.889 39 H 0.157 0.843 40 H 0.118 0.882 41 H 0.117 0.883 42 H 0.119 0.881 43 H 0.111 0.889 44 H 0.079 0.921 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.082 0.918 48 H 0.042 0.958 49 H 0.089 0.911 50 H 0.072 0.928 51 H 0.074 0.926 52 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -0.922 10.384 18.390 21.140 hybrid contribution -0.818 -0.613 -1.735 2.014 sum -1.740 9.771 16.655 19.388 Atomic orbital electron populations 1.22274 0.95577 1.02564 1.01965 1.20963 0.94000 0.96871 0.83348 0.89787 1.46004 1.67559 1.14058 1.09539 1.17191 0.76709 0.86001 0.81788 1.90707 1.51500 1.15360 1.84918 1.20222 1.19637 0.93624 0.96207 1.23201 0.95901 0.97100 0.88708 1.48262 1.48970 1.09380 1.07209 1.22021 1.01062 0.79890 1.01486 1.77098 1.25290 0.90467 1.19483 1.21403 0.94778 0.94293 0.90036 1.20510 1.05402 0.90174 0.93781 1.23006 0.97381 1.02459 0.97918 1.22947 0.92239 1.03364 1.01257 1.21944 1.01318 0.97527 0.92733 0.90505 1.21424 1.00573 0.97655 0.94321 1.22001 1.01236 0.97614 0.96535 1.21342 0.96980 0.91641 0.90146 1.44317 1.70605 1.17993 0.99952 1.18872 1.24517 0.90785 1.04649 0.89880 1.25264 0.98090 0.96070 0.98122 1.69833 1.34802 1.21174 1.29369 0.86941 0.84890 0.75674 0.81069 1.21640 1.23268 1.19555 1.21025 0.96341 0.90666 0.89173 0.92639 0.91584 0.91768 0.76722 0.79702 0.90186 0.88713 0.88923 0.84281 0.88240 0.88347 0.88109 0.88915 0.92108 0.92826 0.92763 0.91789 0.95803 0.91114 0.92772 0.92649 0.95168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.15 8.76 37.16 0.33 -1.82 16 2 C 0.15 2.07 2.36 -67.93 -0.16 1.91 16 3 H 0.08 1.22 7.57 -51.93 -0.39 0.82 16 4 N -0.72 -9.28 5.00 -54.88 -0.27 -9.56 16 5 C 0.60 8.51 7.78 -12.52 -0.10 8.42 16 6 O -0.55 -9.17 14.65 5.27 0.08 -9.09 16 7 C -0.28 -3.67 6.13 -105.07 -0.64 -4.31 16 8 C 0.10 1.06 10.99 -16.56 -0.18 0.88 16 9 N -0.36 -3.69 3.98 -67.60 -0.27 -3.96 16 10 C 0.10 0.56 11.44 59.85 0.68 1.24 16 11 N -0.30 -3.83 12.08 33.90 0.41 -3.42 16 12 C 0.16 2.15 6.80 -82.02 -0.56 1.59 16 13 C -0.08 -0.95 5.66 -91.77 -0.52 -1.47 16 14 C -0.17 -1.65 10.14 -26.73 -0.27 -1.93 16 15 C -0.16 -1.61 10.23 -26.73 -0.27 -1.88 16 16 C -0.11 -1.73 2.27 -90.51 -0.21 -1.93 16 17 H 0.08 1.26 8.14 -51.92 -0.42 0.83 16 18 C -0.10 -1.50 4.89 -26.69 -0.13 -1.63 16 19 C -0.13 -2.29 6.08 -26.61 -0.16 -2.45 16 20 C 0.12 2.62 4.20 -3.71 -0.02 2.60 16 21 N -0.61 -13.57 2.77 -172.32 -0.48 -14.05 16 22 C -0.26 -6.92 10.04 -15.06 -0.15 -7.07 16 23 H 0.08 2.33 8.06 -52.49 -0.42 1.90 16 24 C 0.02 0.66 5.23 -17.43 -0.09 0.57 16 25 N -0.91 -27.12 13.97 55.49 0.78 -26.35 16 26 Si 0.88 21.94 24.35 -169.99 -4.14 17.80 16 27 H -0.29 -6.95 6.62 56.52 0.37 -6.58 16 28 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 29 H -0.27 -6.59 6.64 56.52 0.38 -6.22 16 30 C 0.15 2.74 5.26 -3.71 -0.02 2.72 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.80 6.60 -51.93 -0.34 0.46 16 33 H 0.06 0.84 6.23 -51.93 -0.32 0.52 16 34 H 0.40 4.57 6.20 -40.82 -0.25 4.32 16 35 H 0.19 1.34 7.46 -52.48 -0.39 0.95 16 36 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.14 1.83 6.73 -51.93 -0.35 1.48 16 40 H 0.10 1.00 7.90 -51.93 -0.41 0.59 16 41 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 44 H 0.06 0.86 6.63 -51.93 -0.34 0.52 16 45 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 48 H 0.02 0.50 7.08 -51.93 -0.37 0.13 16 49 H 0.07 1.65 4.50 -51.93 -0.23 1.42 16 50 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 51 H 0.06 0.94 6.75 -51.93 -0.35 0.59 16 52 H 0.03 0.54 6.06 -51.93 -0.31 0.22 16 LS Contribution 401.04 15.07 6.04 6.04 Total: -1.00 -33.69 401.04 -8.66 -42.35 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -8.34 Total: 4.80 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -2.47 Total: -4.56 kcal Atomic # 7 Polarization: -57.50 SS G_CDS: 0.16 Total: -57.34 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.08 Total: -9.09 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.14 Total: 17.80 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.69 -8.66 -42.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025432729.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.994 kcal (2) G-P(sol) polarization free energy of solvation -33.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.83 seconds