Wall clock time and date at job start Wed Apr 1 2020 05:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46953 * 2 1 4 4 N 1.46503 * 109.47013 * 119.99746 * 2 1 3 5 5 C 1.34777 * 119.99997 * 274.99950 * 4 2 1 6 6 O 1.21606 * 119.99778 * 359.72277 * 5 4 2 7 7 C 1.47431 * 120.00133 * 180.02562 * 5 4 2 8 8 C 1.38041 * 126.41273 * 359.69096 * 7 5 4 9 9 N 1.34263 * 107.41668 * 179.87045 * 8 7 5 10 10 C 1.46502 * 125.75562 * 180.14231 * 9 8 7 11 11 N 1.39934 * 108.48914 * 0.39005 * 9 8 7 12 12 C 1.30447 * 108.89984 * 359.75207 * 11 9 8 13 13 C 1.50700 * 125.98897 * 179.97438 * 12 11 9 14 14 C 1.53000 * 117.49809 * 8.65157 * 13 12 11 15 15 C 1.52994 * 117.50199 * 300.02431 * 13 12 11 16 16 C 1.52998 * 109.46850 * 239.99486 * 2 1 3 17 17 H 1.09010 * 109.49503 * 185.06247 * 16 2 1 18 18 C 1.53033 * 109.49647 * 65.00296 * 16 2 1 19 19 C 1.53043 * 109.54068 * 178.67843 * 18 16 2 20 20 C 1.53196 * 109.30854 * 61.36157 * 19 18 16 21 21 N 1.46923 * 108.77845 * 305.36583 * 20 19 18 22 22 C 1.36929 * 120.63340 * 233.61092 * 21 20 19 23 23 H 1.08000 * 120.00706 * 152.62555 * 22 21 20 24 24 C 1.38819 * 120.00056 * 332.62451 * 22 21 20 25 25 N 1.31616 * 120.00168 * 159.34464 * 24 22 21 26 26 Si 1.86798 * 119.99736 * 339.34643 * 24 22 21 27 27 H 1.48504 * 109.47265 * 92.94975 * 26 24 22 28 28 H 1.48500 * 109.46983 * 212.95277 * 26 24 22 29 29 H 1.48503 * 109.47375 * 332.95181 * 26 24 22 30 30 C 1.46936 * 118.73551 * 53.61065 * 21 20 19 31 31 H 1.09002 * 109.47375 * 299.99939 * 1 2 3 32 32 H 1.08993 * 109.47468 * 60.00309 * 1 2 3 33 33 H 1.09005 * 109.46797 * 180.02562 * 1 2 3 34 34 H 0.96998 * 120.00365 * 95.00204 * 4 2 1 35 35 H 1.08003 * 126.29409 * 359.97438 * 8 7 5 36 36 H 1.08997 * 109.46626 * 270.27087 * 10 9 8 37 37 H 1.08996 * 109.46841 * 30.26596 * 10 9 8 38 38 H 1.08995 * 109.47167 * 150.26749 * 10 9 8 39 39 H 1.09001 * 115.54652 * 154.35090 * 13 12 11 40 40 H 1.08999 * 117.49572 * 359.97438 * 14 13 12 41 41 H 1.09001 * 117.49330 * 145.01522 * 14 13 12 42 42 H 1.08997 * 117.50095 * 214.97399 * 15 13 12 43 43 H 1.09006 * 117.49912 * 0.02562 * 15 13 12 44 44 H 1.09000 * 109.46276 * 298.69968 * 18 16 2 45 45 H 1.09001 * 109.46294 * 58.67496 * 18 16 2 46 46 H 1.08996 * 109.50198 * 181.31610 * 19 18 16 47 47 H 1.09001 * 109.49826 * 301.38527 * 19 18 16 48 48 H 1.09000 * 109.58407 * 65.15923 * 20 19 18 49 49 H 1.09002 * 109.58410 * 185.43656 * 20 19 18 50 50 H 0.97001 * 120.00028 * 179.97438 * 25 24 22 51 51 H 1.08999 * 109.58102 * 186.60621 * 30 21 20 52 52 H 1.08995 * 109.58603 * 66.17856 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3572 6 8 1.8626 1.1630 2.4104 7 6 2.6390 -0.7129 3.5609 8 6 2.9983 -2.0428 3.6500 9 7 3.3909 -2.2691 4.9139 10 6 3.8592 -3.5502 5.4484 11 7 3.2718 -1.0763 5.6359 12 6 2.8253 -0.1438 4.8406 13 6 2.5549 1.2893 5.2203 14 6 3.0127 1.7516 6.6051 15 6 1.5234 1.5461 6.3207 16 6 2.0400 -0.7214 -1.2492 17 1 3.1263 -0.8008 -1.2054 18 6 1.6354 0.0685 -2.4960 19 6 2.1733 -0.6348 -3.7443 20 6 1.5612 -2.0359 -3.8397 21 7 1.8219 -2.7525 -2.5838 22 6 2.4222 -3.9832 -2.5944 23 1 3.0005 -4.3094 -1.7426 24 6 2.2874 -4.8117 -3.7001 25 7 3.1534 -5.7814 -3.9053 26 14 0.8770 -4.5503 -4.8966 27 1 1.3238 -3.6659 -6.0029 28 1 0.4495 -5.8597 -5.4515 29 1 -0.2635 -3.9172 -4.1868 30 6 1.4263 -2.1234 -1.3163 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5137 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 2.2491 -1.6317 1.1528 35 1 2.9705 -2.7676 2.8498 36 1 3.0102 -4.1159 5.8321 37 1 4.3460 -4.1184 4.6558 38 1 4.5697 -3.3694 6.2549 39 1 2.6109 2.0103 4.4047 40 1 3.5090 1.0191 7.2416 41 1 3.3700 2.7770 6.7007 42 1 0.9010 2.4362 6.2293 43 1 1.0406 0.6784 6.7703 44 1 0.5485 0.1269 -2.5521 45 1 2.0507 1.0747 -2.4391 46 1 1.9049 -0.0594 -4.6302 47 1 3.2583 -0.7151 -3.6776 48 1 0.4857 -1.9548 -3.9977 49 1 2.0130 -2.5761 -4.6717 50 1 3.0590 -6.3605 -4.6777 51 1 1.7911 -2.7222 -0.4818 52 1 0.3400 -2.0494 -1.2685 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025432729.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:16 Heat of formation + Delta-G solvation = 63.199863 kcal Electronic energy + Delta-G solvation = -31127.211938 eV Core-core repulsion = 27128.824371 eV Total energy + Delta-G solvation = -3998.387566 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 4.15 seconds Orbital eigenvalues (eV) -42.49085 -40.74002 -39.39495 -38.07220 -36.66122 -34.68242 -33.99219 -33.06337 -32.48491 -31.11485 -29.59727 -28.17565 -27.15194 -25.74764 -24.46208 -23.71187 -23.42264 -23.21416 -22.34362 -21.00547 -20.50041 -19.98414 -18.87245 -18.51252 -17.30604 -17.17624 -16.81041 -16.58204 -16.29910 -16.17064 -15.68458 -15.58070 -15.46585 -15.10512 -15.02864 -14.80042 -14.54101 -14.06191 -13.97297 -13.83848 -13.59216 -13.51588 -13.49094 -13.15744 -12.92008 -12.85442 -12.76191 -12.42101 -12.27136 -12.06076 -12.01856 -11.84653 -11.75892 -11.58418 -11.45211 -11.38598 -11.28134 -11.17577 -10.72056 -10.60997 -10.24049 -10.04350 -9.57116 -8.86143 -8.13393 -5.43190 0.50843 1.02075 1.32423 1.41888 1.43512 1.51854 2.32389 2.44626 2.44915 3.03911 3.08851 3.30841 3.36460 3.54938 3.85099 3.92040 3.97862 4.00440 4.03905 4.14361 4.21151 4.27274 4.30440 4.38945 4.41000 4.45873 4.48813 4.59695 4.63145 4.68657 4.71939 4.75025 4.76716 4.83530 4.94066 4.95744 5.03915 5.05283 5.14560 5.18192 5.22379 5.25703 5.29775 5.31396 5.41226 5.44296 5.60785 5.67388 5.86893 5.90557 6.16371 6.49766 6.70397 6.96004 7.36621 7.67217 8.08774 9.06229 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014621 B = 0.002724 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.568897 B =10275.942984 C =11741.061096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.161 3.839 3 H 0.079 0.921 4 N -0.715 5.715 5 C 0.596 3.404 6 O -0.577 6.577 7 C -0.313 4.313 8 C 0.116 3.884 9 N -0.357 5.357 10 C 0.086 3.914 11 N -0.322 5.322 12 C 0.147 3.853 13 C -0.102 4.102 14 C -0.155 4.155 15 C -0.153 4.153 16 C -0.100 4.100 17 H 0.063 0.937 18 C -0.100 4.100 19 C -0.128 4.128 20 C 0.116 3.884 21 N -0.619 5.619 22 C -0.240 4.240 23 H 0.059 0.941 24 C -0.036 4.036 25 N -0.958 5.958 26 Si 0.942 3.058 27 H -0.279 1.279 28 H -0.316 1.316 29 H -0.260 1.260 30 C 0.151 3.849 31 H 0.048 0.952 32 H 0.078 0.922 33 H 0.062 0.938 34 H 0.405 0.595 35 H 0.216 0.784 36 H 0.094 0.906 37 H 0.118 0.882 38 H 0.098 0.902 39 H 0.123 0.877 40 H 0.095 0.905 41 H 0.116 0.884 42 H 0.114 0.886 43 H 0.088 0.912 44 H 0.073 0.927 45 H 0.077 0.923 46 H 0.080 0.920 47 H 0.050 0.950 48 H 0.032 0.968 49 H 0.044 0.956 50 H 0.259 0.741 51 H 0.058 0.942 52 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.246 11.329 17.695 21.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.057 3.943 3 H 0.097 0.903 4 N -0.366 5.366 5 C 0.385 3.615 6 O -0.458 6.458 7 C -0.328 4.328 8 C -0.037 4.037 9 N -0.135 5.135 10 C -0.053 4.053 11 N -0.144 5.144 12 C -0.019 4.019 13 C -0.122 4.122 14 C -0.193 4.193 15 C -0.191 4.191 16 C -0.121 4.121 17 H 0.082 0.918 18 C -0.138 4.138 19 C -0.167 4.167 20 C -0.009 4.009 21 N -0.343 5.343 22 C -0.370 4.370 23 H 0.077 0.923 24 C -0.230 4.230 25 N -0.604 5.604 26 Si 0.772 3.228 27 H -0.206 1.206 28 H -0.245 1.245 29 H -0.184 1.184 30 C 0.026 3.974 31 H 0.067 0.933 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.241 0.759 35 H 0.233 0.767 36 H 0.113 0.887 37 H 0.137 0.863 38 H 0.116 0.884 39 H 0.141 0.859 40 H 0.114 0.886 41 H 0.134 0.866 42 H 0.132 0.868 43 H 0.107 0.893 44 H 0.092 0.908 45 H 0.095 0.905 46 H 0.098 0.902 47 H 0.069 0.931 48 H 0.050 0.950 49 H 0.062 0.938 50 H 0.068 0.932 51 H 0.077 0.923 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -1.959 11.562 18.911 22.252 hybrid contribution -0.433 -0.996 -1.781 2.086 sum -2.392 10.567 17.130 20.269 Atomic orbital electron populations 1.22221 0.94758 1.02522 1.02270 1.20827 0.94458 0.96319 0.82734 0.90263 1.45929 1.67257 1.14306 1.09099 1.17370 0.76176 0.85668 0.82290 1.90682 1.52998 1.16669 1.85432 1.20251 1.21837 0.94911 0.95837 1.23606 0.94055 0.96647 0.89376 1.48657 1.47821 1.09871 1.07103 1.22412 1.01981 0.78308 1.02606 1.77037 1.25876 0.91312 1.20133 1.21635 0.94982 0.94900 0.90418 1.20478 1.07693 0.89732 0.94263 1.23045 0.97077 1.03182 0.95951 1.22993 0.92536 1.03662 0.99875 1.21744 1.00265 0.96059 0.93985 0.91813 1.21446 1.01445 0.98321 0.92542 1.21913 1.00184 0.95589 0.98984 1.21420 0.97443 0.93416 0.88594 1.44473 1.70682 1.17020 1.02138 1.18889 1.22848 0.92089 1.03191 0.92338 1.25842 1.00218 0.96510 1.00442 1.69956 1.36820 1.23071 1.30579 0.85988 0.82283 0.75027 0.79534 1.20638 1.24526 1.18435 1.21214 0.97095 0.91857 0.87221 0.93329 0.90329 0.91872 0.75909 0.76743 0.88719 0.86346 0.88360 0.85926 0.88637 0.86560 0.86760 0.89346 0.90795 0.90473 0.90176 0.93075 0.94970 0.93771 0.93173 0.92328 0.94019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.75 8.76 71.98 0.63 -3.12 16 2 C 0.16 4.05 2.36 44.99 0.11 4.15 16 3 H 0.08 2.14 7.57 -2.39 -0.02 2.12 16 4 N -0.71 -17.50 5.00 -445.79 -2.23 -19.73 16 5 C 0.60 16.78 7.78 86.66 0.67 17.46 16 6 O -0.58 -19.42 14.65 -4.05 -0.06 -19.48 16 7 C -0.31 -8.02 6.13 -20.15 -0.12 -8.15 16 8 C 0.12 2.23 10.99 84.27 0.93 3.16 16 9 N -0.36 -6.79 3.98 -367.79 -1.46 -8.25 16 10 C 0.09 0.81 11.44 127.77 1.46 2.27 16 11 N -0.32 -7.97 12.08 -46.68 -0.56 -8.54 16 12 C 0.15 3.91 6.80 43.52 0.30 4.20 16 13 C -0.10 -2.47 5.66 -11.54 -0.07 -2.54 16 14 C -0.16 -2.92 10.14 30.60 0.31 -2.61 16 15 C -0.15 -2.99 10.23 30.59 0.31 -2.68 16 16 C -0.10 -2.79 2.27 -10.72 -0.02 -2.81 16 17 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 18 C -0.10 -2.59 4.89 30.62 0.15 -2.44 16 19 C -0.13 -3.99 6.08 30.67 0.19 -3.81 16 20 C 0.12 4.65 4.20 86.36 0.36 5.01 16 21 N -0.62 -26.95 2.77 -699.08 -1.94 -28.88 16 22 C -0.24 -12.83 10.04 84.04 0.84 -11.99 16 23 H 0.06 3.34 8.06 -2.91 -0.02 3.32 16 24 C -0.04 -2.01 5.23 84.86 0.44 -1.57 16 25 N -0.96 -58.56 13.97 21.65 0.30 -58.26 16 26 Si 0.94 45.46 24.35 68.60 1.67 47.13 16 27 H -0.28 -12.90 6.62 99.48 0.66 -12.24 16 28 H -0.32 -15.70 7.11 99.48 0.71 -14.99 16 29 H -0.26 -11.91 6.64 99.48 0.66 -11.25 16 30 C 0.15 5.06 5.26 86.36 0.45 5.51 16 31 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.08 1.65 6.60 -2.39 -0.02 1.63 16 33 H 0.06 1.49 6.23 -2.38 -0.01 1.48 16 34 H 0.40 8.67 6.20 -92.71 -0.58 8.09 16 35 H 0.22 2.58 7.46 -2.91 -0.02 2.55 16 36 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.12 3.36 6.73 -2.39 -0.02 3.34 16 40 H 0.10 1.87 7.90 -2.39 -0.02 1.86 16 41 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 44 H 0.07 1.78 6.63 -2.39 -0.02 1.76 16 45 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 46 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 47 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 48 H 0.03 1.25 7.08 -2.39 -0.02 1.23 16 49 H 0.04 2.00 4.50 -2.39 -0.01 1.99 16 50 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 51 H 0.06 1.90 6.75 -2.39 -0.02 1.88 16 52 H 0.04 1.35 6.06 -2.39 -0.01 1.33 16 Total: -1.00 -74.33 401.04 2.93 -71.40 By element: Atomic # 1 Polarization: 24.28 SS G_CDS: 0.26 Total: 24.55 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: 6.95 Total: 0.07 kcal Atomic # 7 Polarization: -117.76 SS G_CDS: -5.89 Total: -123.66 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.06 Total: -19.48 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.67 Total: 47.13 kcal Total: -74.33 2.93 -71.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025432729.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.599 kcal (2) G-P(sol) polarization free energy of solvation -74.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.15 seconds