Wall clock time and date at job start Wed Apr 1 2020 05:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47217 * 2 1 4 4 N 1.46497 * 109.47491 * 120.00631 * 2 1 3 5 5 C 1.34778 * 119.99720 * 275.00033 * 4 2 1 6 6 O 1.21629 * 120.00090 * 359.97438 * 5 4 2 7 7 C 1.47327 * 120.00170 * 179.97438 * 5 4 2 8 8 C 1.36569 * 126.21120 * 179.71615 * 7 5 4 9 9 N 1.34874 * 106.78533 * 179.81189 * 8 7 5 10 10 C 1.36313 * 107.85994 * 0.47900 * 9 8 7 11 11 N 1.29789 * 108.92094 * 359.66034 * 10 9 8 12 12 C 1.51101 * 123.90274 * 179.61312 * 10 9 8 13 13 C 1.53386 * 108.19093 * 344.06671 * 12 10 9 14 14 C 1.53135 * 109.26113 * 48.94190 * 13 12 10 15 15 C 1.46572 * 127.50047 * 180.24663 * 9 8 7 16 16 C 1.53005 * 109.46920 * 240.00579 * 2 1 3 17 17 H 1.08996 * 109.52516 * 185.08370 * 16 2 1 18 18 C 1.53037 * 109.49972 * 64.99815 * 16 2 1 19 19 C 1.53035 * 109.53849 * 178.68635 * 18 16 2 20 20 C 1.53188 * 109.34186 * 61.34486 * 19 18 16 21 21 N 1.46925 * 108.77686 * 305.41782 * 20 19 18 22 22 C 1.36937 * 120.60955 * 233.53214 * 21 20 19 23 23 H 1.08002 * 120.00441 * 151.83532 * 22 21 20 24 24 C 1.38815 * 119.99757 * 331.83938 * 22 21 20 25 25 N 1.31621 * 119.99968 * 343.06641 * 24 22 21 26 26 Si 1.86804 * 119.99912 * 163.06079 * 24 22 21 27 27 H 1.48496 * 109.47076 * 359.97438 * 26 24 22 28 28 H 1.48495 * 109.47114 * 120.00402 * 26 24 22 29 29 H 1.48500 * 109.47032 * 239.99963 * 26 24 22 30 30 C 1.46926 * 118.76387 * 53.55258 * 21 20 19 31 31 H 1.08999 * 109.47041 * 299.99684 * 1 2 3 32 32 H 1.09001 * 109.47390 * 59.99507 * 1 2 3 33 33 H 1.09000 * 109.47556 * 179.97438 * 1 2 3 34 34 H 0.97003 * 120.00400 * 94.99078 * 4 2 1 35 35 H 1.07997 * 126.60894 * 359.93230 * 8 7 5 36 36 H 1.08995 * 109.72128 * 103.73559 * 12 10 9 37 37 H 1.08998 * 109.71584 * 224.38621 * 12 10 9 38 38 H 1.08999 * 109.50657 * 289.00035 * 13 12 10 39 39 H 1.08997 * 109.50757 * 168.87764 * 13 12 10 40 40 H 1.08993 * 109.46363 * 170.18596 * 14 13 12 41 41 H 1.09001 * 109.46416 * 50.21225 * 14 13 12 42 42 H 1.08998 * 109.58514 * 282.89472 * 15 9 8 43 43 H 1.08996 * 109.58532 * 43.31606 * 15 9 8 44 44 H 1.08999 * 109.45819 * 58.66652 * 18 16 2 45 45 H 1.08999 * 109.44883 * 298.69958 * 18 16 2 46 46 H 1.08999 * 109.50134 * 181.32074 * 19 18 16 47 47 H 1.08999 * 109.50086 * 301.38225 * 19 18 16 48 48 H 1.09006 * 109.58559 * 65.17416 * 20 19 18 49 49 H 1.09004 * 109.59042 * 185.59287 * 20 19 18 50 50 H 0.97000 * 119.99851 * 180.02562 * 25 24 22 51 51 H 1.09001 * 109.58815 * 186.62786 * 30 21 20 52 52 H 1.08998 * 109.58822 * 66.20234 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 2.1471 -0.0184 2.3571 6 8 1.8583 1.1618 2.4117 7 6 2.6378 -0.7131 3.5601 8 6 2.8212 -0.1575 4.7941 9 7 3.2755 -1.1393 5.5996 10 6 3.3763 -2.2772 4.8559 11 7 2.9954 -2.0216 3.6418 12 6 3.8605 -3.6005 5.4014 13 6 4.5665 -3.3381 6.7376 14 6 3.6760 -2.4527 7.6140 15 6 3.6164 -1.0406 7.0217 16 6 2.0399 -0.7212 -1.2494 17 1 3.1261 -0.8012 -1.2060 18 6 1.6354 0.0688 -2.4961 19 6 2.1731 -0.6344 -3.7444 20 6 1.5617 -2.0357 -3.8404 21 7 1.8218 -2.7522 -2.5843 22 6 2.4212 -3.9833 -2.5950 23 1 3.0099 -4.3048 -1.7485 24 6 2.2723 -4.8182 -3.6940 25 7 1.3120 -4.5937 -4.5657 26 14 3.4350 -6.2601 -3.9359 27 1 4.4200 -6.2934 -2.8251 28 1 2.6584 -7.5257 -3.9478 29 1 4.1514 -6.1070 -5.2277 30 6 1.4263 -2.1233 -1.3167 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0276 -0.0005 34 1 2.2490 -1.6319 1.1525 35 1 2.6362 0.8695 5.0720 36 1 3.0119 -4.2663 5.5584 37 1 4.5596 -4.0542 4.6988 38 1 5.5150 -2.8331 6.5551 39 1 4.7495 -4.2854 7.2447 40 1 4.0890 -2.4067 8.6217 41 1 2.6711 -2.8731 7.6523 42 1 4.5868 -0.5567 7.1321 43 1 2.8546 -0.4587 7.5405 44 1 2.0505 1.0750 -2.4389 45 1 0.5484 0.1270 -2.5520 46 1 1.9047 -0.0589 -4.6303 47 1 3.2581 -0.7148 -3.6779 48 1 0.4862 -1.9551 -3.9987 49 1 2.0158 -2.5765 -4.6708 50 1 1.2077 -5.1773 -5.3334 51 1 1.7909 -2.7222 -0.4822 52 1 0.3398 -2.0493 -1.2688 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025432799.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:13 Heat of formation + Delta-G solvation = 6.199563 kcal Electronic energy + Delta-G solvation = -30980.942739 eV Core-core repulsion = 26980.083454 eV Total energy + Delta-G solvation = -4000.859285 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -43.41458 -40.86908 -39.38958 -37.39089 -36.63050 -34.71250 -34.35204 -32.57234 -32.24892 -30.82460 -29.63618 -29.40271 -27.22166 -26.10809 -25.04838 -24.02410 -23.65922 -23.13369 -21.93531 -20.99609 -20.10884 -19.95636 -18.81088 -18.44939 -17.31863 -17.22352 -16.83268 -16.80115 -16.12695 -15.76294 -15.69994 -15.27985 -15.17311 -15.03975 -14.98214 -14.78881 -14.68970 -14.57390 -14.10836 -14.06348 -13.93987 -13.65641 -13.30908 -13.03806 -12.79345 -12.76816 -12.70488 -12.25604 -12.09354 -12.05075 -11.99044 -11.93456 -11.91391 -11.69248 -11.51048 -11.34452 -11.25398 -11.07252 -10.94973 -10.70013 -10.51889 -10.08512 -9.45758 -8.63871 -7.85657 -5.30860 0.55722 1.36035 1.45672 1.47367 1.58445 1.65494 2.31374 2.51152 2.52716 3.16643 3.28403 3.55543 3.60086 3.64406 3.80965 3.90777 3.99851 4.01218 4.06325 4.10648 4.34157 4.35681 4.39472 4.43593 4.44660 4.48845 4.50380 4.66973 4.69445 4.85454 4.86241 4.89371 4.91978 4.96989 4.97169 5.05345 5.09103 5.14470 5.14991 5.21800 5.29626 5.30531 5.35398 5.44942 5.48085 5.54817 5.59918 5.69012 5.80250 6.06691 6.40853 6.51572 6.87664 7.16922 7.24467 7.88271 8.39999 9.20481 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.010978 B = 0.002799 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2549.965937 B =10001.470070 C =12199.170398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.158 3.842 3 H 0.084 0.916 4 N -0.707 5.707 5 C 0.601 3.399 6 O -0.580 6.580 7 C -0.103 4.103 8 C 0.047 3.953 9 N -0.447 5.447 10 C 0.207 3.793 11 N -0.496 5.496 12 C -0.038 4.038 13 C -0.120 4.120 14 C -0.131 4.131 15 C 0.090 3.910 16 C -0.096 4.096 17 H 0.060 0.940 18 C -0.096 4.096 19 C -0.131 4.131 20 C 0.175 3.825 21 N -0.609 5.609 22 C -0.261 4.261 23 H 0.062 0.938 24 C -0.050 4.050 25 N -0.934 5.934 26 Si 0.965 3.035 27 H -0.268 1.268 28 H -0.291 1.291 29 H -0.289 1.289 30 C 0.154 3.846 31 H 0.051 0.949 32 H 0.080 0.920 33 H 0.055 0.945 34 H 0.407 0.593 35 H 0.207 0.793 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.071 0.929 39 H 0.105 0.895 40 H 0.121 0.879 41 H 0.073 0.927 42 H 0.105 0.895 43 H 0.112 0.888 44 H 0.076 0.924 45 H 0.066 0.934 46 H 0.072 0.928 47 H 0.047 0.953 48 H -0.002 1.002 49 H 0.051 0.949 50 H 0.249 0.751 51 H 0.042 0.958 52 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.673 7.961 27.235 28.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.053 3.947 3 H 0.102 0.898 4 N -0.356 5.356 5 C 0.389 3.611 6 O -0.461 6.461 7 C -0.231 4.231 8 C -0.095 4.095 9 N -0.128 5.128 10 C -0.058 4.058 11 N -0.216 5.216 12 C -0.077 4.077 13 C -0.158 4.158 14 C -0.169 4.169 15 C -0.029 4.029 16 C -0.117 4.117 17 H 0.078 0.922 18 C -0.134 4.134 19 C -0.170 4.170 20 C 0.049 3.951 21 N -0.332 5.332 22 C -0.391 4.391 23 H 0.080 0.920 24 C -0.245 4.245 25 N -0.580 5.580 26 Si 0.793 3.207 27 H -0.192 1.192 28 H -0.218 1.218 29 H -0.216 1.216 30 C 0.028 3.972 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.074 0.926 34 H 0.243 0.757 35 H 0.224 0.776 36 H 0.116 0.884 37 H 0.112 0.888 38 H 0.089 0.911 39 H 0.123 0.877 40 H 0.139 0.861 41 H 0.092 0.908 42 H 0.123 0.877 43 H 0.131 0.869 44 H 0.095 0.905 45 H 0.084 0.916 46 H 0.091 0.909 47 H 0.066 0.934 48 H 0.016 0.984 49 H 0.070 0.930 50 H 0.059 0.941 51 H 0.061 0.939 52 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 5.433 8.149 26.615 28.360 hybrid contribution 0.325 -0.787 -0.291 0.900 sum 5.757 7.362 26.324 27.933 Atomic orbital electron populations 1.22191 0.94735 1.02187 1.02380 1.20926 0.94579 0.96322 0.82852 0.89820 1.46007 1.65748 1.14641 1.09216 1.17176 0.76325 0.85236 0.82320 1.90719 1.53648 1.16129 1.85596 1.20602 1.15234 0.92075 0.95187 1.22683 1.00784 0.96177 0.89819 1.45639 1.47088 1.08206 1.11892 1.24190 1.03272 0.91978 0.86353 1.70351 1.17103 1.14286 1.19822 1.20471 1.01509 0.87777 0.97928 1.21693 0.98404 1.02318 0.93413 1.21946 1.01797 0.92048 1.01065 1.22559 1.04030 1.01315 0.75027 1.21717 0.99873 0.96194 0.93918 0.92152 1.21412 1.01011 0.98142 0.92832 1.22017 0.99833 0.97023 0.98145 1.20628 0.95348 0.90217 0.88903 1.44290 1.70144 1.17259 1.01524 1.19515 1.23040 0.92961 1.03573 0.91990 1.25770 0.98933 1.00358 0.99487 1.70197 1.31937 1.40679 1.15221 0.85241 0.78776 0.79047 0.77619 1.19234 1.21780 1.21620 1.21062 0.96067 0.91989 0.88064 0.92963 0.90134 0.92644 0.75702 0.77601 0.88393 0.88850 0.91060 0.87682 0.86126 0.90845 0.87691 0.86950 0.90520 0.91554 0.90916 0.93430 0.98418 0.93050 0.94141 0.93902 0.95887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.79 8.76 71.98 0.63 -4.16 16 2 C 0.16 5.11 2.35 44.99 0.11 5.21 16 3 H 0.08 2.73 7.58 -2.39 -0.02 2.71 16 4 N -0.71 -23.78 5.01 -445.88 -2.23 -26.01 16 5 C 0.60 20.55 7.78 86.63 0.67 21.23 16 6 O -0.58 -21.65 16.54 -4.12 -0.07 -21.71 16 7 C -0.10 -3.11 6.98 40.52 0.28 -2.83 16 8 C 0.05 1.05 11.32 83.84 0.95 2.00 16 9 N -0.45 -7.68 3.11 -512.77 -1.60 -9.28 16 10 C 0.21 4.53 7.64 138.05 1.05 5.59 16 11 N -0.50 -14.94 11.00 -176.08 -1.94 -16.88 16 12 C -0.04 -0.52 6.33 30.10 0.19 -0.33 16 13 C -0.12 -0.73 5.95 30.77 0.18 -0.54 16 14 C -0.13 -0.46 5.93 30.72 0.18 -0.28 16 15 C 0.09 0.58 6.96 86.45 0.60 1.18 16 16 C -0.10 -3.45 2.27 -10.71 -0.02 -3.47 16 17 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 18 C -0.10 -3.19 4.89 30.62 0.15 -3.04 16 19 C -0.13 -5.06 6.08 30.67 0.19 -4.88 16 20 C 0.17 8.70 5.30 86.36 0.46 9.15 16 21 N -0.61 -31.71 2.99 -699.07 -2.09 -33.80 16 22 C -0.26 -14.87 9.58 84.03 0.81 -14.06 16 23 H 0.06 3.50 7.89 -2.91 -0.02 3.47 16 24 C -0.05 -2.89 4.92 84.86 0.42 -2.47 16 25 N -0.93 -56.57 11.20 21.65 0.24 -56.33 16 26 Si 0.96 46.11 29.59 68.60 2.03 48.14 16 27 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 28 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 29 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 30 C 0.15 6.64 5.26 86.37 0.45 7.10 16 31 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.08 2.22 6.60 -2.39 -0.02 2.21 16 33 H 0.05 1.80 6.23 -2.39 -0.01 1.78 16 34 H 0.41 14.23 6.99 -92.71 -0.65 13.58 16 35 H 0.21 3.58 8.06 -2.91 -0.02 3.56 16 36 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.07 0.47 8.12 -2.39 -0.02 0.45 16 39 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 40 H 0.12 -0.21 8.14 -2.39 -0.02 -0.23 16 41 H 0.07 0.37 8.11 -2.39 -0.02 0.35 16 42 H 0.10 0.38 8.14 -2.39 -0.02 0.37 16 43 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 44 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 45 H 0.07 2.14 6.63 -2.39 -0.02 2.13 16 46 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 47 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 48 H 0.00 -0.12 8.14 -2.38 -0.02 -0.14 16 49 H 0.05 2.89 6.06 -2.39 -0.01 2.88 16 50 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 51 H 0.04 1.87 6.75 -2.39 -0.02 1.86 16 52 H 0.02 1.02 6.06 -2.39 -0.01 1.00 16 Total: -1.00 -76.86 400.16 1.92 -74.94 By element: Atomic # 1 Polarization: 25.26 SS G_CDS: 0.27 Total: 25.53 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: 7.30 Total: 15.39 kcal Atomic # 7 Polarization: -134.68 SS G_CDS: -7.62 Total: -142.29 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: -0.07 Total: -21.71 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -76.86 1.92 -74.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025432799.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.141 kcal (2) G-P(sol) polarization free energy of solvation -76.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds