Wall clock time and date at job start Wed Apr 1 2020 05:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09010 * 109.47080 * 2 1 4 4 N 1.46494 * 109.47507 * 239.99955 * 2 1 3 5 5 C 1.34777 * 119.99950 * 85.27238 * 4 2 1 6 6 O 1.21620 * 120.00121 * 354.82498 * 5 4 2 7 7 C 1.47171 * 119.99806 * 174.82121 * 5 4 2 8 8 C 1.38402 * 126.88597 * 357.13119 * 7 5 4 9 9 C 1.39668 * 105.35977 * 179.97438 * 8 7 5 10 10 C 1.50703 * 126.06908 * 180.02562 * 9 8 7 11 11 C 1.53004 * 117.49905 * 343.75043 * 10 9 8 12 12 C 1.52998 * 117.50065 * 275.09165 * 10 9 8 13 13 N 1.30863 * 107.86338 * 0.02562 * 9 8 7 14 14 N 1.28446 * 110.92415 * 359.71161 * 13 9 8 15 15 C 1.46502 * 125.19031 * 180.28340 * 14 13 9 16 16 C 1.53005 * 109.46970 * 119.99637 * 2 1 3 17 17 H 1.09000 * 109.49543 * 179.97438 * 16 2 1 18 18 C 1.53036 * 109.49840 * 300.00238 * 16 2 1 19 19 C 1.53041 * 109.53547 * 181.31591 * 18 16 2 20 20 C 1.53181 * 109.31432 * 298.63374 * 19 18 16 21 21 N 1.46928 * 108.77412 * 54.63707 * 20 19 18 22 22 C 1.36936 * 120.62883 * 126.41311 * 21 20 19 23 23 H 1.08001 * 119.99847 * 206.98494 * 22 21 20 24 24 C 1.38810 * 120.00374 * 26.99406 * 22 21 20 25 25 N 1.31621 * 120.00135 * 17.77758 * 24 22 21 26 26 Si 1.86805 * 120.00236 * 197.78161 * 24 22 21 27 27 H 1.48503 * 109.47147 * 89.99506 * 26 24 22 28 28 H 1.48499 * 109.47176 * 209.99743 * 26 24 22 29 29 H 1.48501 * 109.46685 * 329.99440 * 26 24 22 30 30 C 1.46916 * 118.73871 * 306.38985 * 21 20 19 31 31 H 1.09003 * 109.46894 * 60.00276 * 1 2 3 32 32 H 1.08996 * 109.47035 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47110 * 300.00035 * 1 2 3 34 34 H 0.97005 * 119.99865 * 265.00430 * 4 2 1 35 35 H 1.08007 * 127.31849 * 359.97438 * 8 7 5 36 36 H 1.08995 * 115.54844 * 129.41828 * 10 9 8 37 37 H 1.09004 * 117.49590 * 359.97438 * 11 10 9 38 38 H 1.09000 * 117.50073 * 145.01611 * 11 10 9 39 39 H 1.09003 * 117.49923 * 214.98207 * 12 10 9 40 40 H 1.09000 * 117.49721 * 359.97353 * 12 10 9 41 41 H 1.08998 * 109.46630 * 268.87498 * 15 14 13 42 42 H 1.08994 * 109.46793 * 28.87018 * 15 14 13 43 43 H 1.08997 * 109.47112 * 148.87417 * 15 14 13 44 44 H 1.09005 * 109.46174 * 301.33530 * 18 16 2 45 45 H 1.09001 * 109.45903 * 61.31116 * 18 16 2 46 46 H 1.09002 * 109.50019 * 58.59297 * 19 18 16 47 47 H 1.09006 * 109.49670 * 178.65194 * 19 18 16 48 48 H 1.08998 * 109.58959 * 174.42490 * 20 19 18 49 49 H 1.09003 * 109.59007 * 294.84862 * 20 19 18 50 50 H 0.97004 * 120.00375 * 180.02562 * 25 24 22 51 51 H 1.09003 * 109.58826 * 293.82227 * 30 21 20 52 52 H 1.09004 * 109.59153 * 173.39800 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1524 -0.0169 -2.3557 6 8 1.7800 1.1382 -2.4345 7 6 2.7494 -0.6790 -3.5266 8 6 3.2687 -1.9608 -3.5811 9 6 3.7109 -2.1252 -4.8957 10 6 4.3593 -3.3603 -5.4658 11 6 4.9028 -4.3935 -4.4768 12 6 5.8695 -3.5168 -5.2768 13 7 3.4622 -1.0163 -5.5446 14 7 2.8970 -0.1536 -4.7788 15 6 2.4780 1.1900 -5.1855 16 6 2.0400 -0.7212 1.2493 17 1 3.1300 -0.7218 1.2495 18 6 1.5301 -0.0002 2.4992 19 6 2.0666 -0.7015 3.7492 20 6 1.5534 -2.1445 3.7802 21 7 1.9150 -2.8023 2.5172 22 6 2.6007 -3.9876 2.5193 23 1 3.2298 -4.2489 1.6812 24 6 2.4873 -4.8532 3.5984 25 7 1.4846 -4.7261 4.4415 26 14 3.7578 -6.1986 3.8543 27 1 4.8616 -5.6821 4.7029 28 1 3.1204 -7.3604 4.5243 29 1 4.3013 -6.6226 2.5390 30 6 1.5264 -2.1644 1.2520 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8899 34 1 2.2491 -1.6318 -1.1525 35 1 3.3209 -2.6808 -2.7778 36 1 3.9273 -3.7318 -6.3950 37 1 4.7918 -4.1795 -3.4137 38 1 4.8287 -5.4447 -4.7554 39 1 6.4310 -3.9915 -6.0815 40 1 6.3941 -2.7261 -4.7404 41 1 3.2891 1.8946 -5.0017 42 1 2.2320 1.1880 -6.2473 43 1 1.6013 1.4870 -4.6099 44 1 1.8739 1.0342 2.4875 45 1 0.4404 -0.0207 2.5111 46 1 3.1564 -0.7034 3.7259 47 1 1.7227 -0.1734 4.6386 48 1 2.0109 -2.6773 4.6138 49 1 0.4694 -2.1444 3.8949 50 1 1.4055 -5.3308 5.1959 51 1 0.4403 -2.1659 1.1605 52 1 1.9663 -2.7103 0.4173 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025432938.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:52 Heat of formation + Delta-G solvation = 81.836643 kcal Electronic energy + Delta-G solvation = -31209.976422 eV Core-core repulsion = 27212.397008 eV Total energy + Delta-G solvation = -3997.579415 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -42.71164 -39.81052 -38.04684 -37.34977 -35.30667 -33.41202 -32.89994 -31.74268 -30.50641 -30.23868 -28.13127 -27.40552 -25.33834 -24.58571 -23.57662 -22.85585 -22.45766 -22.06961 -20.87370 -20.23148 -19.54751 -18.61605 -17.90854 -16.71331 -16.51435 -16.32365 -15.88370 -15.34533 -14.92900 -14.80410 -14.56344 -14.37805 -14.25220 -13.97108 -13.70247 -13.50049 -13.12017 -13.01684 -12.72524 -12.59205 -12.42681 -12.29015 -12.11366 -11.85138 -11.66033 -11.64652 -11.22593 -11.02456 -10.97352 -10.81043 -10.62822 -10.51459 -10.41453 -10.22068 -10.21181 -10.03552 -9.90519 -9.64784 -9.43792 -9.30837 -8.99779 -8.92316 -8.49019 -6.71739 -5.82266 -3.24293 1.14253 2.21284 2.32898 3.12538 3.16507 3.35369 3.42643 3.43433 3.65924 4.15896 4.44522 4.48173 4.67371 4.75104 4.81749 4.96854 4.98714 5.06720 5.15882 5.18002 5.30917 5.34467 5.36024 5.37779 5.49025 5.52541 5.60944 5.64082 5.67125 5.73060 5.81402 5.95246 5.96062 5.97459 6.07447 6.17695 6.20437 6.28316 6.30583 6.43712 6.53144 6.56200 6.56469 6.66983 6.73164 6.83014 6.93305 7.37121 7.43044 7.64446 7.75522 7.91014 8.08258 8.40381 9.17106 9.80869 10.36864 11.25811 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009310 B = 0.003308 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3006.834816 B = 8461.311711 C =11093.378618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.153 3.847 3 H 0.083 0.917 4 N -0.702 5.702 5 C 0.591 3.409 6 O -0.547 6.547 7 C -0.035 4.035 8 C -0.179 4.179 9 C 0.055 3.945 10 C -0.074 4.074 11 C -0.165 4.165 12 C -0.168 4.168 13 N -0.273 5.273 14 N -0.258 5.258 15 C 0.088 3.912 16 C -0.114 4.114 17 H 0.073 0.927 18 C -0.100 4.100 19 C -0.143 4.143 20 C 0.169 3.831 21 N -0.590 5.590 22 C -0.254 4.254 23 H 0.066 0.934 24 C 0.004 3.996 25 N -0.901 5.901 26 Si 0.901 3.099 27 H -0.288 1.288 28 H -0.291 1.291 29 H -0.279 1.279 30 C 0.152 3.848 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.406 0.594 35 H 0.162 0.838 36 H 0.117 0.883 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.083 0.917 42 H 0.092 0.908 43 H 0.109 0.891 44 H 0.046 0.954 45 H 0.060 0.940 46 H 0.053 0.947 47 H 0.049 0.951 48 H 0.087 0.913 49 H 0.017 0.983 50 H 0.254 0.746 51 H 0.025 0.975 52 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.692 8.315 -16.168 18.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.048 3.952 3 H 0.101 0.899 4 N -0.353 5.353 5 C 0.377 3.623 6 O -0.426 6.426 7 C -0.163 4.163 8 C -0.208 4.208 9 C -0.101 4.101 10 C -0.094 4.094 11 C -0.203 4.203 12 C -0.205 4.205 13 N -0.106 5.106 14 N -0.046 5.046 15 C -0.052 4.052 16 C -0.135 4.135 17 H 0.091 0.909 18 C -0.139 4.139 19 C -0.182 4.182 20 C 0.043 3.957 21 N -0.313 5.313 22 C -0.384 4.384 23 H 0.083 0.917 24 C -0.195 4.195 25 N -0.545 5.545 26 Si 0.731 3.269 27 H -0.215 1.215 28 H -0.218 1.218 29 H -0.204 1.204 30 C 0.025 3.975 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.243 0.757 35 H 0.180 0.820 36 H 0.135 0.865 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.116 0.884 40 H 0.113 0.887 41 H 0.102 0.898 42 H 0.110 0.890 43 H 0.128 0.872 44 H 0.065 0.935 45 H 0.079 0.921 46 H 0.072 0.928 47 H 0.068 0.932 48 H 0.106 0.894 49 H 0.035 0.965 50 H 0.064 0.936 51 H 0.043 0.957 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.424 9.700 -17.141 19.844 hybrid contribution 0.663 -1.453 0.967 1.867 sum 3.087 8.247 -16.174 18.416 Atomic orbital electron populations 1.22265 0.95156 1.02872 1.02065 1.21102 0.94392 0.96601 0.83057 0.89888 1.45931 1.65880 1.14459 1.09059 1.16888 0.78093 0.85446 0.81922 1.90757 1.50844 1.17096 1.83895 1.21438 1.10314 0.95688 0.88872 1.22130 1.04744 0.95444 0.98497 1.20979 1.03690 0.93610 0.91778 1.20020 0.95719 0.92892 1.00783 1.23053 1.02783 0.96324 0.98091 1.22998 0.91468 1.02885 1.03194 1.73077 1.14700 1.00063 1.22808 1.45529 1.40724 1.12921 1.05377 1.22312 1.02803 0.77252 1.02791 1.21975 1.00865 0.98244 0.92368 0.90864 1.21434 1.00360 0.97451 0.94606 1.22181 1.00534 0.99745 0.95717 1.20811 0.96625 0.88024 0.90237 1.44021 1.65401 1.22404 0.99430 1.19175 1.19391 0.94698 1.05119 0.91666 1.25001 0.97200 0.97565 0.99754 1.70041 1.28440 1.39308 1.16729 0.86317 0.81270 0.81319 0.78024 1.21469 1.21787 1.20392 1.20961 0.96574 0.89892 0.90098 0.92739 0.91551 0.91192 0.75732 0.82037 0.86465 0.88012 0.87968 0.88351 0.88719 0.89817 0.88980 0.87238 0.93511 0.92108 0.92794 0.93195 0.89437 0.96459 0.93619 0.95682 0.93492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 8.79 37.16 0.33 -1.87 16 2 C 0.15 2.10 2.37 -67.93 -0.16 1.94 16 3 H 0.08 1.19 7.65 -51.92 -0.40 0.79 16 4 N -0.70 -9.24 4.98 -54.96 -0.27 -9.51 16 5 C 0.59 8.25 7.76 -12.63 -0.10 8.15 16 6 O -0.55 -8.56 14.45 5.26 0.08 -8.48 16 7 C -0.03 -0.46 6.96 -82.06 -0.57 -1.03 16 8 C -0.18 -2.19 9.78 -38.99 -0.38 -2.57 16 9 C 0.06 0.68 6.85 -82.47 -0.57 0.12 16 10 C -0.07 -0.74 6.33 -91.77 -0.58 -1.32 16 11 C -0.17 -1.43 10.03 -26.69 -0.27 -1.70 16 12 C -0.17 -1.46 10.24 -26.70 -0.27 -1.73 16 13 N -0.27 -3.64 11.90 33.64 0.40 -3.23 16 14 N -0.26 -3.30 3.75 -63.88 -0.24 -3.54 16 15 C 0.09 0.84 10.75 59.85 0.64 1.49 16 16 C -0.11 -1.79 2.33 -90.50 -0.21 -2.00 16 17 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 18 C -0.10 -1.57 4.77 -26.69 -0.13 -1.70 16 19 C -0.14 -2.60 6.08 -26.62 -0.16 -2.76 16 20 C 0.17 3.86 5.32 -3.72 -0.02 3.84 16 21 N -0.59 -13.90 3.00 -172.33 -0.52 -14.42 16 22 C -0.25 -6.64 9.59 -15.06 -0.14 -6.79 16 23 H 0.07 1.66 7.89 -52.49 -0.41 1.24 16 24 C 0.00 0.10 4.91 -17.43 -0.09 0.01 16 25 N -0.90 -25.40 11.16 55.49 0.62 -24.78 16 26 Si 0.90 21.05 29.59 -169.99 -5.03 16.02 16 27 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 28 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 29 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 30 C 0.15 2.85 5.30 -3.72 -0.02 2.83 16 31 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 32 H 0.07 0.92 6.32 -51.93 -0.33 0.59 16 33 H 0.07 0.88 6.46 -51.93 -0.34 0.54 16 34 H 0.41 5.02 6.03 -40.82 -0.25 4.78 16 35 H 0.16 1.69 7.02 -52.48 -0.37 1.32 16 36 H 0.12 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.10 0.92 7.22 -51.93 -0.37 0.55 16 38 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.11 1.10 6.46 -51.93 -0.34 0.76 16 44 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.06 0.94 6.50 -51.93 -0.34 0.60 16 46 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.09 2.27 6.00 -51.93 -0.31 1.96 16 49 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 50 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 51 H 0.03 0.49 6.18 -51.93 -0.32 0.17 16 52 H 0.05 0.84 6.52 -51.93 -0.34 0.50 16 LS Contribution 404.52 15.07 6.10 6.10 Total: -1.00 -30.87 404.52 -9.88 -40.75 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -8.31 Total: 6.19 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -2.70 Total: -5.09 kcal Atomic # 7 Polarization: -55.47 SS G_CDS: -0.01 Total: -55.48 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: 0.08 Total: -8.48 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.02 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -30.87 -9.88 -40.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025432938.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.587 kcal (2) G-P(sol) polarization free energy of solvation -30.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds