Wall clock time and date at job start Wed Apr 1 2020 05:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09010 * 109.47080 * 2 1 4 4 N 1.46494 * 109.47507 * 239.99955 * 2 1 3 5 5 C 1.34777 * 119.99950 * 85.27238 * 4 2 1 6 6 O 1.21620 * 120.00121 * 354.82498 * 5 4 2 7 7 C 1.47171 * 119.99806 * 174.82121 * 5 4 2 8 8 C 1.38402 * 126.88597 * 357.13119 * 7 5 4 9 9 C 1.39668 * 105.35977 * 179.97438 * 8 7 5 10 10 C 1.50703 * 126.06908 * 180.02562 * 9 8 7 11 11 C 1.53004 * 117.49905 * 343.75043 * 10 9 8 12 12 C 1.52998 * 117.50065 * 275.09165 * 10 9 8 13 13 N 1.30863 * 107.86338 * 0.02562 * 9 8 7 14 14 N 1.28446 * 110.92415 * 359.71161 * 13 9 8 15 15 C 1.46502 * 125.19031 * 180.28340 * 14 13 9 16 16 C 1.53005 * 109.46970 * 119.99637 * 2 1 3 17 17 H 1.09000 * 109.49543 * 179.97438 * 16 2 1 18 18 C 1.53036 * 109.49840 * 300.00238 * 16 2 1 19 19 C 1.53041 * 109.53547 * 181.31591 * 18 16 2 20 20 C 1.53181 * 109.31432 * 298.63374 * 19 18 16 21 21 N 1.46928 * 108.77412 * 54.63707 * 20 19 18 22 22 C 1.36936 * 120.62883 * 126.41311 * 21 20 19 23 23 H 1.08001 * 119.99847 * 206.98494 * 22 21 20 24 24 C 1.38810 * 120.00374 * 26.99406 * 22 21 20 25 25 N 1.31621 * 120.00135 * 17.77758 * 24 22 21 26 26 Si 1.86805 * 120.00236 * 197.78161 * 24 22 21 27 27 H 1.48503 * 109.47147 * 89.99506 * 26 24 22 28 28 H 1.48499 * 109.47176 * 209.99743 * 26 24 22 29 29 H 1.48501 * 109.46685 * 329.99440 * 26 24 22 30 30 C 1.46916 * 118.73871 * 306.38985 * 21 20 19 31 31 H 1.09003 * 109.46894 * 60.00276 * 1 2 3 32 32 H 1.08996 * 109.47035 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47110 * 300.00035 * 1 2 3 34 34 H 0.97005 * 119.99865 * 265.00430 * 4 2 1 35 35 H 1.08007 * 127.31849 * 359.97438 * 8 7 5 36 36 H 1.08995 * 115.54844 * 129.41828 * 10 9 8 37 37 H 1.09004 * 117.49590 * 359.97438 * 11 10 9 38 38 H 1.09000 * 117.50073 * 145.01611 * 11 10 9 39 39 H 1.09003 * 117.49923 * 214.98207 * 12 10 9 40 40 H 1.09000 * 117.49721 * 359.97353 * 12 10 9 41 41 H 1.08998 * 109.46630 * 268.87498 * 15 14 13 42 42 H 1.08994 * 109.46793 * 28.87018 * 15 14 13 43 43 H 1.08997 * 109.47112 * 148.87417 * 15 14 13 44 44 H 1.09005 * 109.46174 * 301.33530 * 18 16 2 45 45 H 1.09001 * 109.45903 * 61.31116 * 18 16 2 46 46 H 1.09002 * 109.50019 * 58.59297 * 19 18 16 47 47 H 1.09006 * 109.49670 * 178.65194 * 19 18 16 48 48 H 1.08998 * 109.58959 * 174.42490 * 20 19 18 49 49 H 1.09003 * 109.59007 * 294.84862 * 20 19 18 50 50 H 0.97004 * 120.00375 * 180.02562 * 25 24 22 51 51 H 1.09003 * 109.58826 * 293.82227 * 30 21 20 52 52 H 1.09004 * 109.59153 * 173.39800 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1524 -0.0169 -2.3557 6 8 1.7800 1.1382 -2.4345 7 6 2.7494 -0.6790 -3.5266 8 6 3.2687 -1.9608 -3.5811 9 6 3.7109 -2.1252 -4.8957 10 6 4.3593 -3.3603 -5.4658 11 6 4.9028 -4.3935 -4.4768 12 6 5.8695 -3.5168 -5.2768 13 7 3.4622 -1.0163 -5.5446 14 7 2.8970 -0.1536 -4.7788 15 6 2.4780 1.1900 -5.1855 16 6 2.0400 -0.7212 1.2493 17 1 3.1300 -0.7218 1.2495 18 6 1.5301 -0.0002 2.4992 19 6 2.0666 -0.7015 3.7492 20 6 1.5534 -2.1445 3.7802 21 7 1.9150 -2.8023 2.5172 22 6 2.6007 -3.9876 2.5193 23 1 3.2298 -4.2489 1.6812 24 6 2.4873 -4.8532 3.5984 25 7 1.4846 -4.7261 4.4415 26 14 3.7578 -6.1986 3.8543 27 1 4.8616 -5.6821 4.7029 28 1 3.1204 -7.3604 4.5243 29 1 4.3013 -6.6226 2.5390 30 6 1.5264 -2.1644 1.2520 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8899 34 1 2.2491 -1.6318 -1.1525 35 1 3.3209 -2.6808 -2.7778 36 1 3.9273 -3.7318 -6.3950 37 1 4.7918 -4.1795 -3.4137 38 1 4.8287 -5.4447 -4.7554 39 1 6.4310 -3.9915 -6.0815 40 1 6.3941 -2.7261 -4.7404 41 1 3.2891 1.8946 -5.0017 42 1 2.2320 1.1880 -6.2473 43 1 1.6013 1.4870 -4.6099 44 1 1.8739 1.0342 2.4875 45 1 0.4404 -0.0207 2.5111 46 1 3.1564 -0.7034 3.7259 47 1 1.7227 -0.1734 4.6386 48 1 2.0109 -2.6773 4.6138 49 1 0.4694 -2.1444 3.8949 50 1 1.4055 -5.3308 5.1959 51 1 0.4403 -2.1659 1.1605 52 1 1.9663 -2.7103 0.4173 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025432938.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:50 Heat of formation + Delta-G solvation = 64.713788 kcal Electronic energy + Delta-G solvation = -31210.718925 eV Core-core repulsion = 27212.397008 eV Total energy + Delta-G solvation = -3998.321918 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -43.64921 -40.97616 -39.42553 -38.09582 -36.72050 -34.81725 -33.94118 -33.00381 -32.26472 -31.40467 -29.45167 -28.21532 -27.18470 -25.74958 -24.56249 -23.98174 -23.67093 -23.13634 -22.09611 -21.38508 -20.63852 -19.89728 -18.96879 -18.50242 -17.44530 -17.37591 -16.82151 -16.77611 -16.32934 -16.03209 -15.68212 -15.55327 -15.30713 -15.19094 -15.07375 -14.69761 -14.66361 -14.09284 -13.97861 -13.78733 -13.67157 -13.45422 -13.28254 -13.01387 -12.91105 -12.75004 -12.68415 -12.30976 -12.24363 -12.10253 -12.05579 -11.90630 -11.69738 -11.54187 -11.48943 -11.32094 -11.17179 -11.09797 -11.01212 -10.48421 -10.35800 -10.04729 -9.81379 -8.63401 -7.83056 -5.26881 0.13971 1.31831 1.40935 1.49283 1.51501 1.59096 2.07722 2.14698 2.54200 2.92938 3.31389 3.32210 3.49800 3.61756 3.88223 3.94261 4.00619 4.03380 4.06632 4.13033 4.21792 4.28270 4.36666 4.37226 4.42592 4.47712 4.49188 4.59382 4.67392 4.71590 4.75973 4.85299 4.86876 4.90402 4.98759 5.06035 5.06552 5.16351 5.22068 5.23764 5.31464 5.31858 5.37314 5.39603 5.46429 5.51534 5.61781 5.66744 5.71636 5.83023 6.35306 6.42836 6.93843 7.03172 7.19038 7.91304 8.42120 9.22863 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009310 B = 0.003308 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3006.834816 B = 8461.311711 C =11093.378618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.163 3.837 3 H 0.087 0.913 4 N -0.698 5.698 5 C 0.595 3.405 6 O -0.565 6.565 7 C -0.051 4.051 8 C -0.180 4.180 9 C 0.047 3.953 10 C -0.087 4.087 11 C -0.160 4.160 12 C -0.163 4.163 13 N -0.288 5.288 14 N -0.263 5.263 15 C 0.084 3.916 16 C -0.098 4.098 17 H 0.067 0.933 18 C -0.097 4.097 19 C -0.132 4.132 20 C 0.173 3.827 21 N -0.608 5.608 22 C -0.258 4.258 23 H 0.071 0.929 24 C -0.050 4.050 25 N -0.935 5.935 26 Si 0.960 3.040 27 H -0.289 1.289 28 H -0.299 1.299 29 H -0.265 1.265 30 C 0.150 3.850 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.079 0.921 34 H 0.410 0.590 35 H 0.175 0.825 36 H 0.126 0.874 37 H 0.096 0.904 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.112 0.888 43 H 0.103 0.897 44 H 0.076 0.924 45 H 0.065 0.935 46 H 0.048 0.952 47 H 0.068 0.932 48 H 0.051 0.949 49 H -0.004 1.004 50 H 0.248 0.752 51 H 0.023 0.977 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.566 8.924 -17.570 20.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.058 3.942 3 H 0.105 0.895 4 N -0.349 5.349 5 C 0.381 3.619 6 O -0.445 6.445 7 C -0.179 4.179 8 C -0.209 4.209 9 C -0.108 4.108 10 C -0.107 4.107 11 C -0.197 4.197 12 C -0.201 4.201 13 N -0.122 5.122 14 N -0.051 5.051 15 C -0.055 4.055 16 C -0.119 4.119 17 H 0.085 0.915 18 C -0.135 4.135 19 C -0.171 4.171 20 C 0.047 3.953 21 N -0.331 5.331 22 C -0.388 4.388 23 H 0.089 0.911 24 C -0.245 4.245 25 N -0.581 5.581 26 Si 0.789 3.211 27 H -0.216 1.216 28 H -0.226 1.226 29 H -0.189 1.189 30 C 0.025 3.975 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.247 0.753 35 H 0.192 0.808 36 H 0.144 0.856 37 H 0.114 0.886 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.103 0.897 41 H 0.111 0.889 42 H 0.130 0.870 43 H 0.122 0.878 44 H 0.094 0.906 45 H 0.084 0.916 46 H 0.067 0.933 47 H 0.087 0.913 48 H 0.069 0.931 49 H 0.014 0.986 50 H 0.057 0.943 51 H 0.041 0.959 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.307 10.328 -18.575 21.509 hybrid contribution 0.369 -1.623 1.352 2.144 sum 3.676 8.706 -17.223 19.645 Atomic orbital electron populations 1.22215 0.94594 1.02472 1.02539 1.20953 0.94643 0.96345 0.82228 0.89509 1.45865 1.65687 1.14585 1.08791 1.16936 0.77724 0.85163 0.82122 1.90745 1.51707 1.17852 1.84221 1.21449 1.11164 0.96262 0.89039 1.22362 1.04228 0.95367 0.98987 1.21412 1.03439 0.94095 0.91863 1.20142 0.96506 0.92497 1.01557 1.23127 1.02078 0.96948 0.97579 1.23051 0.90842 1.02607 1.03559 1.73066 1.15231 1.00579 1.23283 1.45828 1.40458 1.13621 1.05161 1.22492 1.02856 0.76240 1.03939 1.21750 1.00308 0.96197 0.93621 0.91477 1.21428 1.00646 0.98570 0.92877 1.22014 1.00045 0.96876 0.98144 1.20631 0.95060 0.90494 0.89108 1.44277 1.65531 1.22209 1.01103 1.19544 1.19061 0.95277 1.04954 0.91142 1.25702 0.98867 0.99974 0.99997 1.70193 1.30244 1.40382 1.17288 0.85363 0.78916 0.78620 0.78176 1.21619 1.22570 1.18939 1.21099 0.96518 0.91619 0.88293 0.92787 0.92339 0.90208 0.75286 0.80761 0.85607 0.88592 0.86364 0.86535 0.89723 0.88892 0.86981 0.87828 0.90567 0.91593 0.93337 0.91331 0.93104 0.98599 0.94309 0.95927 0.92802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.94 8.79 71.98 0.63 -3.30 16 2 C 0.16 4.13 2.37 44.99 0.11 4.24 16 3 H 0.09 2.24 7.65 -2.38 -0.02 2.22 16 4 N -0.70 -17.29 4.98 -446.05 -2.22 -19.51 16 5 C 0.59 15.86 7.76 86.59 0.67 16.53 16 6 O -0.57 -16.96 14.45 -4.10 -0.06 -17.02 16 7 C -0.05 -1.29 6.96 40.79 0.28 -1.01 16 8 C -0.18 -4.23 9.78 22.65 0.22 -4.00 16 9 C 0.05 1.12 6.85 43.05 0.30 1.41 16 10 C -0.09 -1.59 6.33 -11.54 -0.07 -1.67 16 11 C -0.16 -2.47 10.03 30.62 0.31 -2.16 16 12 C -0.16 -2.55 10.24 30.62 0.31 -2.24 16 13 N -0.29 -7.38 11.90 -47.49 -0.57 -7.94 16 14 N -0.26 -6.47 3.75 -356.03 -1.33 -7.80 16 15 C 0.08 1.51 10.75 127.77 1.37 2.88 16 16 C -0.10 -2.90 2.33 -10.72 -0.02 -2.92 16 17 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 18 C -0.10 -2.81 4.77 30.62 0.15 -2.66 16 19 C -0.13 -4.64 6.08 30.67 0.19 -4.45 16 20 C 0.17 8.01 5.32 86.36 0.46 8.47 16 21 N -0.61 -28.69 3.00 -699.14 -2.10 -30.78 16 22 C -0.26 -13.50 9.59 84.03 0.81 -12.69 16 23 H 0.07 3.53 7.89 -2.91 -0.02 3.51 16 24 C -0.05 -2.71 4.91 84.86 0.42 -2.30 16 25 N -0.93 -54.17 11.16 21.65 0.24 -53.93 16 26 Si 0.96 43.62 29.59 68.60 2.03 45.65 16 27 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 28 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 29 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 30 C 0.15 5.51 5.30 86.36 0.46 5.97 16 31 H 0.05 1.35 8.12 -2.39 -0.02 1.33 16 32 H 0.06 1.53 6.32 -2.39 -0.02 1.52 16 33 H 0.08 1.81 6.46 -2.39 -0.02 1.79 16 34 H 0.41 9.55 6.03 -92.70 -0.56 8.99 16 35 H 0.18 3.44 7.02 -2.91 -0.02 3.42 16 36 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.10 1.59 7.22 -2.38 -0.02 1.58 16 38 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.10 2.00 6.46 -2.39 -0.02 1.98 16 44 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 45 H 0.07 1.87 6.50 -2.39 -0.02 1.85 16 46 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 47 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 48 H 0.05 2.72 6.00 -2.39 -0.01 2.71 16 49 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 50 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 51 H 0.02 0.86 6.18 -2.39 -0.01 0.85 16 52 H 0.05 1.87 6.52 -2.39 -0.02 1.85 16 Total: -1.00 -66.65 404.52 2.95 -63.70 By element: Atomic # 1 Polarization: 27.15 SS G_CDS: 0.37 Total: 27.53 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: 6.58 Total: 0.10 kcal Atomic # 7 Polarization: -113.99 SS G_CDS: -5.98 Total: -119.96 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -0.06 Total: -17.02 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -66.65 2.95 -63.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025432938.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.413 kcal (2) G-P(sol) polarization free energy of solvation -66.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds