Wall clock time and date at job start Wed Apr 1 2020 05:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47407 * 2 1 4 4 N 1.46507 * 109.47296 * 120.00193 * 2 1 3 5 5 C 1.34772 * 119.99623 * 274.99874 * 4 2 1 6 6 O 1.21632 * 120.00190 * 5.32915 * 5 4 2 7 7 C 1.47169 * 119.99926 * 185.32996 * 5 4 2 8 8 C 1.38400 * 126.88115 * 355.81320 * 7 5 4 9 9 C 1.39676 * 105.35913 * 179.91558 * 8 7 5 10 10 C 1.50703 * 126.07088 * 180.14494 * 9 8 7 11 11 C 1.52998 * 117.49663 * 343.89281 * 10 9 8 12 12 C 1.52996 * 117.49979 * 275.26964 * 10 9 8 13 13 N 1.30859 * 107.85987 * 0.35588 * 9 8 7 14 14 N 1.28445 * 110.93132 * 359.77023 * 13 9 8 15 15 C 1.46502 * 125.19594 * 180.02562 * 14 13 9 16 16 C 1.53003 * 109.46922 * 239.99922 * 2 1 3 17 17 H 1.09007 * 109.52032 * 184.92289 * 16 2 1 18 18 C 1.53038 * 109.49727 * 64.83842 * 16 2 1 19 19 C 1.53078 * 109.65568 * 178.74513 * 18 16 2 20 20 C 1.53188 * 109.29377 * 61.15796 * 19 18 16 21 21 N 1.46927 * 108.89030 * 305.57351 * 20 19 18 22 22 C 1.36939 * 120.63116 * 233.55732 * 21 20 19 23 23 H 1.08004 * 120.00112 * 141.66724 * 22 21 20 24 24 C 1.38813 * 120.00175 * 321.67452 * 22 21 20 25 25 N 1.31621 * 120.00026 * 350.27929 * 24 22 21 26 26 Si 1.86799 * 120.00122 * 170.27618 * 24 22 21 27 27 H 1.48499 * 109.46709 * 90.00329 * 26 24 22 28 28 H 1.48500 * 109.47372 * 210.00077 * 26 24 22 29 29 H 1.48498 * 109.47252 * 330.00449 * 26 24 22 30 30 C 1.46928 * 118.74033 * 53.54360 * 21 20 19 31 31 H 1.08997 * 109.46816 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46522 * 299.99822 * 1 2 3 33 33 H 1.08995 * 109.47048 * 59.99779 * 1 2 3 34 34 H 0.96994 * 120.00015 * 94.99877 * 4 2 1 35 35 H 1.08003 * 127.32078 * 0.02562 * 8 7 5 36 36 H 1.08996 * 115.54881 * 129.60084 * 10 9 8 37 37 H 1.08998 * 117.50221 * 359.97438 * 11 10 9 38 38 H 1.09004 * 117.49764 * 145.01894 * 11 10 9 39 39 H 1.09005 * 117.49895 * 214.98154 * 12 10 9 40 40 H 1.09006 * 117.49802 * 359.97438 * 12 10 9 41 41 H 1.09000 * 109.47245 * 269.59175 * 15 14 13 42 42 H 1.09001 * 109.46736 * 29.59357 * 15 14 13 43 43 H 1.09003 * 109.46869 * 149.59238 * 15 14 13 44 44 H 1.08998 * 109.45838 * 298.69975 * 18 16 2 45 45 H 1.09003 * 109.46030 * 58.67396 * 18 16 2 46 46 H 1.08993 * 109.39120 * 301.27396 * 19 18 16 47 47 H 1.09007 * 109.61552 * 181.16921 * 19 18 16 48 48 H 1.09003 * 109.59030 * 185.71652 * 20 19 18 49 49 H 1.09004 * 109.58911 * 65.42985 * 20 19 18 50 50 H 0.96996 * 120.00133 * 179.97438 * 25 24 22 51 51 H 1.08999 * 109.58960 * 66.17311 * 30 21 20 52 52 H 1.09003 * 109.58327 * 186.46264 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 2.1471 -0.0183 2.3571 6 8 1.7675 1.1344 2.4376 7 6 2.7471 -0.6789 3.5274 8 6 3.1507 -1.9995 3.6196 9 6 3.6522 -2.1435 4.9153 10 6 4.2218 -3.4050 5.5112 11 6 3.9260 -4.7224 4.7915 12 6 3.2377 -4.4054 6.1207 13 7 3.5354 -0.9896 5.5213 14 7 3.0118 -0.1129 4.7422 15 6 2.7403 1.2812 5.1012 16 6 2.0400 -0.7213 -1.2493 17 1 3.1265 -0.7988 -1.2071 18 6 1.6319 0.0665 -2.4963 19 6 2.1672 -0.6355 -3.7468 20 6 1.5607 -2.0393 -3.8380 21 7 1.8248 -2.7541 -2.5818 22 6 2.4282 -3.9833 -2.5921 23 1 3.1479 -4.2380 -1.8281 24 6 2.1150 -4.9020 -3.5845 25 7 1.1070 -4.6727 -4.3992 26 14 3.1242 -6.4637 -3.7637 27 1 2.5279 -7.5369 -2.9283 28 1 3.1294 -6.8892 -5.1865 29 1 4.5175 -6.2065 -3.3189 30 6 1.4295 -2.1248 -1.3143 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3632 0.5138 0.8901 33 1 -0.3633 0.5138 -0.8899 34 1 2.2491 -1.6318 1.1526 35 1 3.0922 -2.7572 2.8522 36 1 5.1950 -3.3006 5.9907 37 1 3.3190 -4.6767 3.8873 38 1 4.7048 -5.4850 4.7973 39 1 3.5636 -4.9595 7.0010 40 1 2.1782 -4.1509 6.0911 41 1 1.7340 1.3612 5.5123 42 1 3.4644 1.6122 5.8457 43 1 2.8206 1.9075 4.2126 44 1 0.5447 0.1223 -2.5509 45 1 2.0449 1.0737 -2.4408 46 1 3.2526 -0.7115 -3.6825 47 1 1.8940 -0.0628 -4.6332 48 1 2.0144 -2.5802 -4.6685 49 1 0.4849 -1.9630 -3.9958 50 1 0.8884 -5.3144 -5.0929 51 1 0.3429 -2.0533 -1.2651 52 1 1.7945 -2.7234 -0.4797 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025432941.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:05 Heat of formation + Delta-G solvation = 78.104038 kcal Electronic energy + Delta-G solvation = -31161.469030 eV Core-core repulsion = 27163.727757 eV Total energy + Delta-G solvation = -3997.741273 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.71045 -39.79172 -38.01787 -37.35763 -35.27279 -33.38732 -32.89126 -31.77144 -30.44961 -30.26672 -28.11245 -27.40511 -25.30917 -24.58444 -23.57662 -22.84334 -22.44856 -22.07229 -20.87245 -20.19985 -19.55879 -18.63460 -17.88661 -16.68360 -16.52952 -16.26926 -15.94248 -15.31072 -14.90150 -14.84729 -14.55277 -14.32048 -14.25791 -13.98476 -13.74029 -13.47488 -13.09420 -13.01886 -12.70854 -12.54929 -12.39571 -12.30308 -12.12697 -11.83427 -11.66651 -11.65691 -11.22072 -10.99853 -10.94295 -10.81944 -10.62669 -10.54861 -10.41994 -10.23816 -10.21039 -10.04724 -9.92325 -9.65947 -9.40848 -9.30418 -8.99476 -8.91471 -8.51075 -6.53483 -5.82972 -3.37795 1.14526 2.21150 2.33124 3.12499 3.17307 3.33462 3.40878 3.42237 3.65518 4.15771 4.43637 4.48074 4.67113 4.74744 4.81621 4.96657 4.99957 5.06702 5.16953 5.20054 5.30928 5.35920 5.36465 5.38338 5.48322 5.54439 5.61262 5.65258 5.68481 5.72529 5.82892 5.95120 5.96628 5.97527 6.09091 6.19398 6.22726 6.29632 6.31315 6.45484 6.55390 6.56399 6.58352 6.67638 6.75723 6.83525 6.97083 7.34206 7.43761 7.60973 7.76772 7.91190 8.08706 8.48103 9.19402 9.78624 10.41957 11.24641 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009340 B = 0.003254 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2997.146721 B = 8602.231837 C =11186.340912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.153 3.847 3 H 0.083 0.917 4 N -0.702 5.702 5 C 0.591 3.409 6 O -0.547 6.547 7 C -0.034 4.034 8 C -0.179 4.179 9 C 0.055 3.945 10 C -0.074 4.074 11 C -0.165 4.165 12 C -0.168 4.168 13 N -0.273 5.273 14 N -0.259 5.259 15 C 0.088 3.912 16 C -0.114 4.114 17 H 0.073 0.927 18 C -0.099 4.099 19 C -0.143 4.143 20 C 0.174 3.826 21 N -0.588 5.588 22 C -0.262 4.262 23 H 0.059 0.941 24 C 0.014 3.986 25 N -0.898 5.898 26 Si 0.900 3.100 27 H -0.285 1.285 28 H -0.290 1.290 29 H -0.278 1.278 30 C 0.151 3.849 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.069 0.931 34 H 0.406 0.594 35 H 0.162 0.838 36 H 0.117 0.883 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.083 0.917 42 H 0.091 0.909 43 H 0.110 0.890 44 H 0.060 0.940 45 H 0.046 0.954 46 H 0.053 0.947 47 H 0.049 0.951 48 H 0.073 0.927 49 H 0.020 0.980 50 H 0.254 0.746 51 H 0.026 0.974 52 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.993 7.879 16.300 18.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.049 3.951 3 H 0.101 0.899 4 N -0.353 5.353 5 C 0.376 3.624 6 O -0.426 6.426 7 C -0.163 4.163 8 C -0.208 4.208 9 C -0.101 4.101 10 C -0.094 4.094 11 C -0.202 4.202 12 C -0.205 4.205 13 N -0.107 5.107 14 N -0.046 5.046 15 C -0.052 4.052 16 C -0.135 4.135 17 H 0.091 0.909 18 C -0.137 4.137 19 C -0.182 4.182 20 C 0.049 3.951 21 N -0.311 5.311 22 C -0.392 4.392 23 H 0.077 0.923 24 C -0.186 4.186 25 N -0.540 5.540 26 Si 0.730 3.270 27 H -0.212 1.212 28 H -0.216 1.216 29 H -0.203 1.203 30 C 0.025 3.975 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.242 0.758 35 H 0.180 0.820 36 H 0.135 0.865 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.116 0.884 40 H 0.113 0.887 41 H 0.102 0.898 42 H 0.110 0.890 43 H 0.128 0.872 44 H 0.078 0.922 45 H 0.065 0.935 46 H 0.072 0.928 47 H 0.068 0.932 48 H 0.092 0.908 49 H 0.038 0.962 50 H 0.064 0.936 51 H 0.044 0.956 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.828 9.318 17.219 19.781 hybrid contribution 0.420 -1.624 -0.913 1.910 sum 3.247 7.694 16.306 18.320 Atomic orbital electron populations 1.22266 0.95141 1.02938 1.02029 1.21109 0.94420 0.96558 0.83034 0.89933 1.45908 1.65908 1.14484 1.08963 1.16888 0.78167 0.85441 0.81862 1.90760 1.50493 1.17311 1.84018 1.21441 1.10463 0.94378 0.89992 1.22127 1.05089 0.94968 0.98660 1.20978 1.03754 0.92899 0.92435 1.20016 0.99646 0.85398 1.04352 1.23039 1.03549 0.96990 0.96669 1.22989 0.98443 1.01913 0.97197 1.73071 1.16581 0.99352 1.21651 1.45528 1.41763 1.10344 1.06917 1.22319 1.03014 0.75625 1.04235 1.21977 1.00975 0.98226 0.92285 0.90905 1.21409 1.00575 0.97161 0.94605 1.22191 1.00601 0.99631 0.95781 1.20683 0.96609 0.87920 0.89914 1.43871 1.69850 1.17714 0.99632 1.19045 1.17150 0.90051 1.12964 0.92295 1.25328 0.96173 0.97366 0.99728 1.69981 1.27394 1.36244 1.20419 0.86349 0.80054 0.83544 0.77093 1.21192 1.21570 1.20315 1.21021 0.96163 0.90082 0.90265 0.91435 0.92757 0.91255 0.75781 0.82036 0.86469 0.88019 0.87979 0.88354 0.88717 0.89798 0.89007 0.87206 0.92180 0.93542 0.92824 0.93204 0.90833 0.96235 0.93552 0.95635 0.93463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 8.76 37.16 0.33 -1.91 16 2 C 0.15 2.12 2.31 -67.92 -0.16 1.96 16 3 H 0.08 1.18 7.66 -51.93 -0.40 0.78 16 4 N -0.70 -9.25 5.00 -54.96 -0.27 -9.52 16 5 C 0.59 8.26 7.75 -12.64 -0.10 8.16 16 6 O -0.55 -8.58 14.41 5.25 0.08 -8.50 16 7 C -0.03 -0.45 6.96 -82.06 -0.57 -1.03 16 8 C -0.18 -2.19 9.79 -38.98 -0.38 -2.57 16 9 C 0.06 0.68 6.85 -82.47 -0.57 0.12 16 10 C -0.07 -0.73 6.33 -91.77 -0.58 -1.31 16 11 C -0.16 -1.41 10.02 -26.73 -0.27 -1.67 16 12 C -0.17 -1.43 10.23 -26.73 -0.27 -1.71 16 13 N -0.27 -3.63 11.90 33.64 0.40 -3.23 16 14 N -0.26 -3.30 3.75 -63.88 -0.24 -3.54 16 15 C 0.09 0.84 10.77 59.85 0.64 1.49 16 16 C -0.11 -1.80 2.28 -90.50 -0.21 -2.00 16 17 H 0.07 1.22 8.14 -51.92 -0.42 0.80 16 18 C -0.10 -1.56 4.88 -26.67 -0.13 -1.69 16 19 C -0.14 -2.59 6.09 -26.59 -0.16 -2.75 16 20 C 0.17 3.98 5.22 -3.71 -0.02 3.96 16 21 N -0.59 -13.92 2.94 -172.31 -0.51 -14.43 16 22 C -0.26 -6.87 9.49 -15.06 -0.14 -7.02 16 23 H 0.06 1.51 7.85 -52.48 -0.41 1.10 16 24 C 0.01 0.38 5.03 -17.43 -0.09 0.29 16 25 N -0.90 -25.36 11.55 55.49 0.64 -24.72 16 26 Si 0.90 20.95 29.56 -169.99 -5.03 15.92 16 27 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 28 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 29 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 30 C 0.15 2.88 5.26 -3.71 -0.02 2.86 16 31 H 0.07 0.95 6.23 -51.93 -0.32 0.63 16 32 H 0.05 0.74 8.08 -51.93 -0.42 0.32 16 33 H 0.07 0.89 6.59 -51.93 -0.34 0.55 16 34 H 0.41 5.01 6.30 -40.82 -0.26 4.75 16 35 H 0.16 1.67 7.00 -52.48 -0.37 1.30 16 36 H 0.12 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.10 0.90 7.21 -51.93 -0.37 0.52 16 38 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.11 1.11 6.42 -51.93 -0.33 0.77 16 44 H 0.06 0.93 6.62 -51.93 -0.34 0.59 16 45 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 47 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.07 1.89 6.64 -51.93 -0.34 1.54 16 49 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 51 H 0.03 0.51 6.06 -51.93 -0.31 0.19 16 52 H 0.05 0.86 6.75 -51.93 -0.35 0.51 16 LS Contribution 405.76 15.07 6.11 6.11 Total: -1.00 -30.98 405.76 -9.88 -40.86 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -8.37 Total: 5.87 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -2.69 Total: -4.82 kcal Atomic # 7 Polarization: -55.46 SS G_CDS: 0.02 Total: -55.44 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.08 Total: -8.50 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.03 Total: 15.92 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -30.98 -9.88 -40.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025432941.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.960 kcal (2) G-P(sol) polarization free energy of solvation -30.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds